Wall clock time and date at job start Tue Mar 31 2020 09:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47434 * 2 1 4 4 C 1.50694 * 109.47466 * 239.99205 * 2 1 3 5 5 H 1.08007 * 120.00455 * 266.77265 * 4 2 1 6 6 C 1.37880 * 120.00099 * 86.76909 * 4 2 1 7 7 N 1.31517 * 119.99547 * 354.04774 * 6 4 2 8 8 Si 1.86799 * 120.00192 * 173.76705 * 6 4 2 9 9 H 1.48497 * 109.47155 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46956 * 120.00376 * 8 6 4 11 11 H 1.48499 * 109.47234 * 240.00268 * 8 6 4 12 12 N 1.46508 * 109.46476 * 119.99500 * 2 1 3 13 13 C 1.46492 * 120.00163 * 60.00353 * 12 2 1 14 14 S 1.65602 * 119.99698 * 239.99887 * 12 2 1 15 15 O 1.42099 * 106.40143 * 203.54170 * 14 12 2 16 16 O 1.42099 * 106.40241 * 336.46038 * 14 12 2 17 17 N 1.65594 * 107.21702 * 90.00116 * 14 12 2 18 18 C 1.46503 * 119.99888 * 65.00038 * 17 14 12 19 19 H 1.08997 * 109.47194 * 24.99934 * 18 17 14 20 20 C 1.52996 * 109.47330 * 264.99732 * 18 17 14 21 21 C 1.52996 * 109.47705 * 179.97438 * 20 18 17 22 22 C 1.53007 * 109.46875 * 59.99770 * 21 20 18 23 23 C 1.52996 * 109.47142 * 300.00575 * 22 21 20 24 24 C 1.53002 * 109.47427 * 60.00066 * 23 22 21 25 25 H 1.08997 * 109.47370 * 59.99630 * 24 23 22 26 26 N 1.46894 * 109.46971 * 179.97438 * 24 23 22 27 27 H 1.09002 * 109.47342 * 176.59593 * 1 2 3 28 28 H 1.08997 * 109.47807 * 296.60174 * 1 2 3 29 29 H 1.09005 * 109.46552 * 56.60249 * 1 2 3 30 30 H 0.97001 * 120.00062 * 359.53189 * 7 6 4 31 31 H 1.09002 * 109.47489 * 89.99415 * 13 12 2 32 32 H 1.09000 * 109.47217 * 209.99753 * 13 12 2 33 33 H 1.09003 * 109.47563 * 329.99720 * 13 12 2 34 34 H 0.96993 * 120.00453 * 244.99765 * 17 14 12 35 35 H 1.09005 * 109.47278 * 300.00521 * 20 18 17 36 36 H 1.08999 * 109.46777 * 59.99879 * 20 18 17 37 37 H 1.08993 * 109.47849 * 180.02562 * 21 20 18 38 38 H 1.09005 * 109.47292 * 300.00653 * 21 20 18 39 39 H 1.09005 * 109.46439 * 60.00361 * 22 21 20 40 40 H 1.08997 * 109.47027 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46777 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47147 * 299.99561 * 23 22 21 43 43 H 1.00896 * 111.00360 * 299.99798 * 26 24 23 44 44 H 1.00903 * 111.00261 * 63.95138 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2621 -1.7651 -1.1890 6 6 2.1988 -0.0145 -2.4088 7 7 1.8098 1.2391 -2.4926 8 14 2.9839 -0.8494 -3.8839 9 1 3.3360 -2.2483 -3.5315 10 1 2.0265 -0.8513 -5.0191 11 1 4.2127 -0.1124 -4.2739 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0930 1.4282 14 16 2.9702 0.1143 2.2864 15 8 3.7116 -0.8787 2.9817 16 8 3.5793 1.1830 1.5749 17 7 1.9605 0.8093 3.3997 18 6 1.1506 -0.0349 4.2817 19 1 1.6293 -1.0077 4.3936 20 6 -0.2417 -0.2184 3.6747 21 6 -1.0873 -1.1005 4.5954 22 6 -1.2126 -0.4336 5.9668 23 6 0.1798 -0.2501 6.5737 24 6 1.0253 0.6321 5.6530 25 1 0.5465 1.6049 5.5415 26 7 2.3620 0.8087 6.2361 27 1 -0.3634 -1.0259 -0.0610 28 1 -0.3634 0.4601 0.9188 29 1 -0.3632 0.5657 -0.8580 30 1 1.3996 1.6718 -1.7274 31 1 2.4156 -2.7377 0.9720 32 1 1.6236 -2.2850 2.5004 33 1 0.6903 -2.3002 0.9848 34 1 1.9052 1.7753 3.4680 35 1 -0.7204 0.7545 3.5628 36 1 -0.1525 -0.6938 2.6980 37 1 -2.0791 -1.2316 4.1628 38 1 -0.6085 -2.0733 4.7070 39 1 -1.6915 0.5393 5.8552 40 1 -1.8146 -1.0622 6.6228 41 1 0.0905 0.2254 7.5505 42 1 0.6586 -1.2229 6.6852 43 1 2.3058 1.2478 7.1428 44 1 2.8520 -0.0716 6.2905 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575912752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:34 Heat of formation + Delta-G solvation = -98.069398 kcal Electronic energy + Delta-G solvation = -25556.542636 eV Core-core repulsion = 22055.500056 eV Total energy + Delta-G solvation = -3501.042580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.30895 -36.58123 -36.31277 -35.12844 -34.07649 -33.63915 -32.65226 -29.41079 -29.14226 -27.40535 -25.67164 -24.72139 -22.64545 -21.91097 -20.88991 -20.33844 -18.71032 -17.40178 -16.98929 -16.78167 -16.30818 -15.78172 -15.15910 -14.72840 -14.24749 -13.84240 -13.83065 -13.68338 -13.45931 -13.32146 -13.27182 -13.00620 -12.64434 -12.00632 -11.88854 -11.64345 -11.52635 -11.41847 -11.36639 -11.34316 -11.21210 -11.13536 -11.05330 -10.81917 -10.72202 -10.59719 -10.31407 -10.12678 -10.10175 -9.19448 -8.93255 -8.77218 -8.43276 -7.82986 -6.40252 -4.11468 1.28068 3.44293 3.49005 3.55362 3.62271 4.15275 4.32614 4.45141 4.52408 4.62057 4.81246 4.93689 5.02572 5.04888 5.17862 5.23965 5.29444 5.32961 5.47394 5.54690 5.62555 5.73815 5.83418 5.87647 5.96193 6.03634 6.06560 6.18303 6.26921 6.35687 6.47135 6.50362 6.59818 6.72103 6.99807 7.06804 7.29428 7.33174 7.39288 7.70307 8.10567 8.44692 8.81197 9.58967 10.98138 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.004862 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.791516 B = 5757.439896 C = 6263.892699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.252 3.748 3 H 0.059 0.941 4 C -0.597 4.597 5 H 0.057 0.943 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 1.073 2.927 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.285 1.285 12 N -0.986 5.986 13 C 0.109 3.891 14 S 2.778 3.222 15 O -0.998 6.998 16 O -0.977 6.977 17 N -1.116 6.116 18 C 0.165 3.835 19 H 0.083 0.917 20 C -0.146 4.146 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.152 4.152 24 C 0.089 3.911 25 H 0.085 0.915 26 N -0.840 5.840 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.271 0.729 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.339 0.661 44 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.184 -3.557 17.772 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.637 4.637 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.539 5.539 8 Si 0.902 3.098 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.211 1.211 12 N -0.829 5.829 13 C -0.038 4.038 14 S 2.787 3.213 15 O -0.981 6.981 16 O -0.961 6.961 17 N -0.873 5.873 18 C 0.056 3.944 19 H 0.101 0.899 20 C -0.186 4.186 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.193 4.193 24 C -0.024 4.024 25 H 0.103 0.897 26 N -0.368 5.368 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.151 0.849 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.549 -2.975 15.557 16.783 hybrid contribution -1.337 -0.523 2.414 2.809 sum -6.885 -3.498 17.971 19.561 Atomic orbital electron populations 1.22239 0.99142 1.00309 0.98901 1.18840 0.90353 0.93585 0.82378 0.92314 1.22145 1.48555 0.97639 0.95366 0.92432 1.25835 0.95329 0.95846 1.01228 1.70750 1.37518 1.12006 1.33595 0.83489 0.76609 0.74829 0.74902 1.21467 1.21419 1.21144 1.57869 1.70098 1.19473 1.35424 1.21143 1.01392 0.82636 0.98586 1.02057 0.73705 0.73185 0.72359 1.93515 1.69144 1.60926 1.74509 1.93609 1.74337 1.56062 1.72053 1.56039 1.61916 1.17216 1.52116 1.20657 0.91164 0.93753 0.88793 0.89894 1.22253 0.95039 1.01148 1.00116 1.21523 1.00249 0.98909 0.94965 1.21500 0.96325 1.01047 0.96625 1.22425 0.97003 1.00756 0.99083 1.21708 0.88812 0.98768 0.93118 0.89702 1.58776 1.17579 1.30587 1.29887 0.93692 0.95762 0.92599 0.91760 0.93231 0.93474 0.91324 0.75499 0.91146 0.89797 0.91472 0.91829 0.91794 0.92045 0.91860 0.91758 0.84889 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.79 37.16 0.33 -2.70 16 2 C 0.25 6.01 2.25 -69.08 -0.16 5.86 16 3 H 0.06 1.58 5.72 -51.93 -0.30 1.28 16 4 C -0.60 -16.17 8.29 -34.44 -0.29 -16.45 16 5 H 0.06 1.55 7.35 -52.48 -0.39 1.17 16 6 C 0.02 0.66 5.45 -17.82 -0.10 0.57 16 7 N -0.90 -26.76 13.61 55.43 0.75 -26.00 16 8 Si 1.07 25.27 29.91 -169.99 -5.08 20.18 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.99 -20.25 2.79 -115.86 -0.32 -20.58 16 13 C 0.11 1.91 8.23 59.84 0.49 2.40 16 14 S 2.78 56.14 6.07 -107.50 -0.65 55.48 16 15 O -1.00 -21.33 16.55 -57.17 -0.95 -22.28 16 16 O -0.98 -24.11 16.70 -57.17 -0.95 -25.06 16 17 N -1.12 -16.85 5.36 -4.89 -0.03 -16.87 16 18 C 0.16 2.03 2.41 -67.93 -0.16 1.86 16 19 H 0.08 1.09 7.06 -51.93 -0.37 0.72 16 20 C -0.15 -1.65 5.46 -26.74 -0.15 -1.80 16 21 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 23 C -0.15 -1.20 5.49 -26.73 -0.15 -1.35 16 24 C 0.09 0.88 2.83 -67.71 -0.19 0.69 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 26 N -0.84 -8.47 9.09 -4.67 -0.04 -8.52 16 27 H 0.04 0.88 6.81 -51.93 -0.35 0.52 16 28 H 0.02 0.42 7.16 -51.93 -0.37 0.05 16 29 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 30 H 0.27 7.93 6.30 -40.82 -0.26 7.68 16 31 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 33 H 0.07 1.12 6.50 -51.93 -0.34 0.79 16 34 H 0.41 5.79 8.84 -34.47 -0.30 5.49 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.09 5.44 -51.93 -0.28 0.81 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.34 2.64 9.04 -39.29 -0.36 2.29 16 44 H 0.34 3.53 8.98 -39.29 -0.35 3.18 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -33.55 349.90 -9.73 -43.28 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.04 Total: 8.30 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.68 Total: -13.21 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: 0.36 Total: -71.97 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -1.90 Total: -47.34 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.18 kcal Atomic # 16 Polarization: 56.14 SS G_CDS: -0.65 Total: 55.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.55 -9.73 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.788 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds