Wall clock time and date at job start Tue Mar 31 2020 09:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47434 * 2 1 4 4 C 1.50694 * 109.47466 * 239.99205 * 2 1 3 5 5 H 1.08007 * 120.00455 * 266.77265 * 4 2 1 6 6 C 1.37880 * 120.00099 * 86.76909 * 4 2 1 7 7 N 1.31517 * 119.99547 * 354.04774 * 6 4 2 8 8 Si 1.86799 * 120.00192 * 173.76705 * 6 4 2 9 9 H 1.48497 * 109.47155 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46956 * 120.00376 * 8 6 4 11 11 H 1.48499 * 109.47234 * 240.00268 * 8 6 4 12 12 N 1.46508 * 109.46476 * 119.99500 * 2 1 3 13 13 C 1.46492 * 120.00163 * 60.00353 * 12 2 1 14 14 S 1.65602 * 119.99698 * 239.99887 * 12 2 1 15 15 O 1.42099 * 106.40143 * 203.54170 * 14 12 2 16 16 O 1.42099 * 106.40241 * 336.46038 * 14 12 2 17 17 N 1.65594 * 107.21702 * 90.00116 * 14 12 2 18 18 C 1.46503 * 119.99888 * 65.00038 * 17 14 12 19 19 H 1.08997 * 109.47194 * 24.99934 * 18 17 14 20 20 C 1.52996 * 109.47330 * 264.99732 * 18 17 14 21 21 C 1.52996 * 109.47705 * 179.97438 * 20 18 17 22 22 C 1.53007 * 109.46875 * 59.99770 * 21 20 18 23 23 C 1.52996 * 109.47142 * 300.00575 * 22 21 20 24 24 C 1.53002 * 109.47427 * 60.00066 * 23 22 21 25 25 H 1.08997 * 109.47370 * 59.99630 * 24 23 22 26 26 N 1.46894 * 109.46971 * 179.97438 * 24 23 22 27 27 H 1.09002 * 109.47342 * 176.59593 * 1 2 3 28 28 H 1.08997 * 109.47807 * 296.60174 * 1 2 3 29 29 H 1.09005 * 109.46552 * 56.60249 * 1 2 3 30 30 H 0.97001 * 120.00062 * 359.53189 * 7 6 4 31 31 H 1.09002 * 109.47489 * 89.99415 * 13 12 2 32 32 H 1.09000 * 109.47217 * 209.99753 * 13 12 2 33 33 H 1.09003 * 109.47563 * 329.99720 * 13 12 2 34 34 H 0.96993 * 120.00453 * 244.99765 * 17 14 12 35 35 H 1.09005 * 109.47278 * 300.00521 * 20 18 17 36 36 H 1.08999 * 109.46777 * 59.99879 * 20 18 17 37 37 H 1.08993 * 109.47849 * 180.02562 * 21 20 18 38 38 H 1.09005 * 109.47292 * 300.00653 * 21 20 18 39 39 H 1.09005 * 109.46439 * 60.00361 * 22 21 20 40 40 H 1.08997 * 109.47027 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46777 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47147 * 299.99561 * 23 22 21 43 43 H 1.00896 * 111.00360 * 299.99798 * 26 24 23 44 44 H 1.00903 * 111.00261 * 63.95138 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2621 -1.7651 -1.1890 6 6 2.1988 -0.0145 -2.4088 7 7 1.8098 1.2391 -2.4926 8 14 2.9839 -0.8494 -3.8839 9 1 3.3360 -2.2483 -3.5315 10 1 2.0265 -0.8513 -5.0191 11 1 4.2127 -0.1124 -4.2739 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0930 1.4282 14 16 2.9702 0.1143 2.2864 15 8 3.7116 -0.8787 2.9817 16 8 3.5793 1.1830 1.5749 17 7 1.9605 0.8093 3.3997 18 6 1.1506 -0.0349 4.2817 19 1 1.6293 -1.0077 4.3936 20 6 -0.2417 -0.2184 3.6747 21 6 -1.0873 -1.1005 4.5954 22 6 -1.2126 -0.4336 5.9668 23 6 0.1798 -0.2501 6.5737 24 6 1.0253 0.6321 5.6530 25 1 0.5465 1.6049 5.5415 26 7 2.3620 0.8087 6.2361 27 1 -0.3634 -1.0259 -0.0610 28 1 -0.3634 0.4601 0.9188 29 1 -0.3632 0.5657 -0.8580 30 1 1.3996 1.6718 -1.7274 31 1 2.4156 -2.7377 0.9720 32 1 1.6236 -2.2850 2.5004 33 1 0.6903 -2.3002 0.9848 34 1 1.9052 1.7753 3.4680 35 1 -0.7204 0.7545 3.5628 36 1 -0.1525 -0.6938 2.6980 37 1 -2.0791 -1.2316 4.1628 38 1 -0.6085 -2.0733 4.7070 39 1 -1.6915 0.5393 5.8552 40 1 -1.8146 -1.0622 6.6228 41 1 0.0905 0.2254 7.5505 42 1 0.6586 -1.2229 6.6852 43 1 2.3058 1.2478 7.1428 44 1 2.8520 -0.0716 6.2905 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575912752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:33 Heat of formation + Delta-G solvation = -125.183219 kcal Electronic energy + Delta-G solvation = -25557.718379 eV Core-core repulsion = 22055.500056 eV Total energy + Delta-G solvation = -3502.218323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15818 -38.34939 -38.05201 -36.88948 -35.10665 -34.68810 -34.38422 -30.93413 -30.26074 -28.26026 -27.24367 -26.75251 -23.50071 -22.81638 -22.59947 -21.20046 -20.22860 -19.11232 -18.59801 -18.41293 -17.59863 -16.69965 -16.51584 -15.84199 -15.64263 -15.38201 -15.19505 -15.05897 -14.77212 -14.47763 -14.33740 -14.05583 -13.65991 -13.62541 -13.53786 -13.22118 -13.19343 -13.06386 -12.88798 -12.78129 -12.54709 -12.40233 -12.15616 -12.12078 -12.00416 -11.95334 -11.91720 -11.51776 -11.19214 -10.84627 -10.54321 -10.32681 -9.61962 -9.49895 -8.59110 -6.30672 -0.32666 1.53774 1.62733 1.77930 2.04922 2.57267 2.64238 3.23336 3.42112 3.49343 3.69890 3.84928 4.00008 4.14354 4.18021 4.24640 4.27139 4.49416 4.51480 4.55610 4.65677 4.69060 4.80262 4.80718 4.87006 4.94345 4.95575 5.06376 5.17908 5.19160 5.25549 5.33361 5.35127 5.41477 5.52409 5.57728 5.85296 6.08746 6.15669 6.28178 6.32742 6.63102 6.63682 7.47279 8.79575 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.004862 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.791516 B = 5757.439896 C = 6263.892699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.254 3.746 3 H 0.025 0.975 4 C -0.606 4.606 5 H 0.055 0.945 6 C -0.028 4.028 7 N -0.933 5.933 8 Si 1.112 2.888 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.991 5.991 13 C 0.104 3.896 14 S 2.793 3.207 15 O -1.011 7.011 16 O -1.027 7.027 17 N -1.101 6.101 18 C 0.157 3.843 19 H 0.077 0.923 20 C -0.145 4.145 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.145 4.145 24 C 0.094 3.906 25 H 0.088 0.912 26 N -0.854 5.854 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.419 0.581 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.352 0.648 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 -4.752 19.633 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.150 3.850 3 H 0.042 0.958 4 C -0.646 4.646 5 H 0.073 0.927 6 C -0.228 4.228 7 N -0.570 5.570 8 Si 0.935 3.065 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.214 1.214 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.803 3.197 15 O -0.994 6.994 16 O -1.012 7.012 17 N -0.862 5.862 18 C 0.050 3.950 19 H 0.095 0.905 20 C -0.185 4.185 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.185 4.185 24 C -0.019 4.019 25 H 0.106 0.894 26 N -0.384 5.384 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.166 0.834 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.940 -4.193 17.438 19.231 hybrid contribution -0.907 -0.170 1.993 2.197 sum -7.847 -4.363 19.431 21.406 Atomic orbital electron populations 1.22009 0.96522 1.01066 0.99454 1.18591 0.92163 0.91696 0.82560 0.95763 1.22511 1.47799 0.97668 0.96617 0.92698 1.27103 0.95554 0.95881 1.04255 1.70852 1.39668 1.13105 1.33422 0.82994 0.75954 0.74776 0.72745 1.19642 1.20064 1.21427 1.57619 1.69951 1.20792 1.34851 1.21346 1.01622 0.80577 1.00645 1.01275 0.73765 0.72305 0.72363 1.93492 1.69933 1.61386 1.74568 1.93539 1.76164 1.57753 1.73706 1.55600 1.61647 1.17749 1.51161 1.20980 0.91092 0.93218 0.89702 0.90471 1.22227 0.94693 1.01704 0.99856 1.21518 1.00066 0.98550 0.95213 1.21497 0.96363 1.01411 0.95979 1.22358 0.96582 1.00388 0.99182 1.21656 0.89209 0.99123 0.91929 0.89426 1.58766 1.17842 1.30733 1.31029 0.92378 0.92761 0.94777 0.92893 0.94411 0.90483 0.89966 0.74646 0.90951 0.91425 0.90707 0.91549 0.91472 0.90579 0.90241 0.91691 0.83381 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.79 71.98 0.63 -4.72 16 2 C 0.25 12.30 2.25 44.24 0.10 12.40 16 3 H 0.02 1.36 5.72 -2.39 -0.01 1.35 16 4 C -0.61 -33.16 8.29 25.60 0.21 -32.95 16 5 H 0.05 2.96 7.35 -2.91 -0.02 2.94 16 6 C -0.03 -1.61 5.45 84.65 0.46 -1.15 16 7 N -0.93 -56.75 13.61 21.45 0.29 -56.46 16 8 Si 1.11 51.05 29.91 68.60 2.05 53.11 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 N -0.99 -40.41 2.79 -520.46 -1.45 -41.86 16 13 C 0.10 3.49 8.23 127.77 1.05 4.54 16 14 S 2.79 113.22 6.07 -56.49 -0.34 112.88 16 15 O -1.01 -42.79 16.55 -128.00 -2.12 -44.90 16 16 O -1.03 -52.27 16.70 -128.00 -2.14 -54.41 16 17 N -1.10 -32.31 5.36 -169.38 -0.91 -33.21 16 18 C 0.16 3.56 2.41 44.99 0.11 3.67 16 19 H 0.08 1.86 7.06 -2.39 -0.02 1.85 16 20 C -0.15 -2.94 5.46 30.59 0.17 -2.78 16 21 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 22 C -0.11 -1.36 5.92 30.60 0.18 -1.18 16 23 C -0.14 -1.80 5.49 30.59 0.17 -1.64 16 24 C 0.09 1.62 2.83 44.92 0.13 1.75 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 N -0.85 -15.56 9.09 -168.68 -1.53 -17.09 16 27 H 0.06 2.19 6.81 -2.39 -0.02 2.17 16 28 H 0.05 1.85 7.16 -2.39 -0.02 1.83 16 29 H 0.03 1.52 7.68 -2.38 -0.02 1.51 16 30 H 0.26 15.88 6.30 -92.71 -0.58 15.29 16 31 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 32 H 0.08 2.11 7.35 -2.39 -0.02 2.09 16 33 H 0.08 2.53 6.50 -2.39 -0.02 2.52 16 34 H 0.42 11.50 8.84 -96.75 -0.85 10.65 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.60 5.44 -2.39 -0.01 1.59 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.35 4.70 9.04 -89.70 -0.81 3.89 16 44 H 0.34 6.44 8.98 -89.69 -0.81 5.64 16 Total: -1.00 -73.63 349.90 -4.02 -77.65 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -1.26 Total: 27.89 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 3.39 Total: -23.58 kcal Atomic # 7 Polarization: -145.03 SS G_CDS: -3.60 Total: -148.63 kcal Atomic # 8 Polarization: -95.06 SS G_CDS: -4.26 Total: -99.31 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.11 kcal Atomic # 16 Polarization: 113.22 SS G_CDS: -0.34 Total: 112.88 kcal Total: -73.63 -4.02 -77.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.532 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds