Wall clock time and date at job start Tue Mar 31 2020 09:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47341 * 2 1 4 4 C 1.50702 * 109.47010 * 120.00088 * 2 1 3 5 5 H 1.08001 * 120.00281 * 119.99636 * 4 2 1 6 6 C 1.37873 * 119.99847 * 299.99739 * 4 2 1 7 7 N 1.31520 * 120.00159 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00043 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46943 * 90.00281 * 8 6 4 10 10 H 1.48504 * 109.46955 * 209.99931 * 8 6 4 11 11 H 1.48492 * 109.47228 * 329.99890 * 8 6 4 12 12 N 1.46501 * 109.47027 * 239.99534 * 2 1 3 13 13 C 1.46498 * 120.00118 * 300.00554 * 12 2 1 14 14 S 1.65605 * 119.99922 * 119.99952 * 12 2 1 15 15 O 1.42101 * 106.40129 * 336.46345 * 14 12 2 16 16 O 1.42100 * 106.40455 * 203.54232 * 14 12 2 17 17 N 1.65605 * 107.21451 * 90.00052 * 14 12 2 18 18 C 1.46499 * 119.99754 * 65.00464 * 17 14 12 19 19 H 1.09002 * 109.47391 * 24.99564 * 18 17 14 20 20 C 1.53002 * 109.46799 * 264.99661 * 18 17 14 21 21 C 1.53006 * 109.46711 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47445 * 59.99695 * 21 20 18 23 23 C 1.53002 * 109.47092 * 300.00075 * 22 21 20 24 24 C 1.53000 * 109.46840 * 144.99895 * 18 17 14 25 25 H 1.08992 * 109.47399 * 59.99666 * 24 18 17 26 26 N 1.46905 * 109.47123 * 299.99549 * 24 18 17 27 27 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 300.00311 * 1 2 3 29 29 H 1.08995 * 109.47338 * 59.99825 * 1 2 3 30 30 H 0.96998 * 119.99893 * 179.97438 * 7 6 4 31 31 H 1.09008 * 109.46792 * 269.99529 * 13 12 2 32 32 H 1.09003 * 109.47404 * 29.99601 * 13 12 2 33 33 H 1.09006 * 109.47262 * 150.00106 * 13 12 2 34 34 H 0.97000 * 119.99610 * 245.00076 * 17 14 12 35 35 H 1.09002 * 109.47075 * 299.99543 * 20 18 17 36 36 H 1.08996 * 109.47407 * 60.00500 * 20 18 17 37 37 H 1.09001 * 109.46726 * 179.97438 * 21 20 18 38 38 H 1.09002 * 109.46589 * 299.99365 * 21 20 18 39 39 H 1.09002 * 109.47045 * 59.99942 * 22 21 20 40 40 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46497 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47067 * 299.99853 * 23 22 21 43 43 H 1.00896 * 111.00025 * 180.02562 * 26 24 18 44 44 H 1.00906 * 110.99517 * 303.95857 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2863 15 8 2.6904 1.4971 -2.1194 16 8 2.8227 -0.5647 -3.5259 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8415 19 1 4.6087 -2.0616 -2.5691 20 6 5.0177 -2.0783 -0.4540 21 6 5.6365 -3.4774 -0.4785 22 6 7.1123 -3.3757 -0.8690 23 6 7.2301 -2.7417 -2.2564 24 6 6.6115 -1.3430 -2.2322 25 1 7.1384 -0.7257 -1.5047 26 7 6.7247 -0.7342 -3.5644 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.9039 -0.5274 4.4376 31 1 2.4157 -2.7378 -0.9716 32 1 0.6903 -2.3003 -0.9845 33 1 1.6237 -2.2854 -2.5002 34 1 5.0733 0.6549 -1.5282 35 1 5.5447 -1.4610 0.2735 36 1 3.9663 -2.1505 -0.1757 37 1 5.5528 -3.9289 0.5101 38 1 5.1097 -4.0949 -1.2061 39 1 7.6389 -2.7582 -0.1414 40 1 7.5531 -4.3724 -0.8859 41 1 8.2816 -2.6697 -2.5347 42 1 6.7035 -3.3592 -2.9841 43 1 7.6906 -0.6566 -3.8455 44 1 6.1906 -1.2529 -4.2455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575912755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:37 Heat of formation + Delta-G solvation = -83.695386 kcal Electronic energy + Delta-G solvation = -25752.761528 eV Core-core repulsion = 22252.342252 eV Total energy + Delta-G solvation = -3500.419276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.09376 -36.68843 -36.38358 -35.26124 -33.90636 -33.45128 -32.50300 -30.01332 -29.16713 -27.22827 -25.75638 -25.00928 -22.40959 -21.69961 -20.87525 -20.07221 -18.62620 -17.36031 -16.98510 -16.60219 -16.18747 -15.58930 -15.41851 -14.89963 -14.38338 -14.01151 -13.76299 -13.56248 -13.36047 -13.18785 -13.06403 -12.73944 -12.38565 -12.27286 -12.07741 -11.93917 -11.58488 -11.54012 -11.35702 -11.23709 -11.18494 -11.11929 -11.02098 -10.94910 -10.54840 -10.44737 -10.16831 -10.04544 -9.58598 -9.32490 -8.98332 -8.65830 -8.65119 -8.07161 -6.16111 -4.16559 1.26094 3.23608 3.36655 3.39447 3.48917 4.12583 4.34070 4.46423 4.64603 4.79279 4.96820 5.07175 5.15933 5.16824 5.28795 5.39913 5.49130 5.50174 5.60019 5.69784 5.83258 5.91389 6.06496 6.09421 6.13144 6.17704 6.23871 6.28733 6.36282 6.41925 6.50489 6.58066 6.63165 6.82635 6.87273 7.11895 7.28065 7.35195 7.41910 7.53459 7.67378 8.43595 8.87759 9.45593 10.95832 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.006317 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.709917 B = 4431.409274 C = 5355.310112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.056 0.944 4 C -0.524 4.524 5 H 0.087 0.913 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.875 3.125 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.986 5.986 13 C 0.094 3.906 14 S 2.788 3.212 15 O -0.988 6.988 16 O -0.997 6.997 17 N -1.108 6.108 18 C 0.168 3.832 19 H 0.081 0.919 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.150 4.150 24 C 0.088 3.912 25 H 0.086 0.914 26 N -0.840 5.840 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.337 0.663 44 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.383 -4.932 -10.093 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.563 4.563 5 H 0.105 0.895 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.705 3.295 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.187 1.187 12 N -0.827 5.827 13 C -0.052 4.052 14 S 2.796 3.204 15 O -0.972 6.972 16 O -0.980 6.980 17 N -0.866 5.866 18 C 0.059 3.941 19 H 0.099 0.901 20 C -0.187 4.187 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.190 4.190 24 C -0.025 4.025 25 H 0.104 0.896 26 N -0.368 5.368 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.615 -3.921 -10.421 13.489 hybrid contribution 0.215 -0.101 0.635 0.678 sum 7.830 -4.023 -9.786 13.162 Atomic orbital electron populations 1.22429 0.99046 1.01239 0.99172 1.19066 0.90820 0.93420 0.83244 0.92603 1.21262 1.32542 1.14315 0.88182 0.89532 1.24877 0.95567 0.96435 0.95822 1.69870 1.45263 1.40103 0.97925 0.87046 0.80811 0.84128 0.77491 1.20425 1.22293 1.18654 1.57456 1.65038 1.21422 1.38814 1.21381 1.02107 0.81707 0.99976 1.01576 0.72668 0.72847 0.73259 1.93574 1.83973 1.32686 1.86948 1.93524 1.86174 1.76384 1.41935 1.55733 1.31311 1.14628 1.84879 1.20663 0.93172 0.82995 0.97221 0.90126 1.22294 1.04389 0.95558 0.96427 1.21516 0.94888 0.97348 1.01824 1.21509 0.97410 1.00338 0.96274 1.22388 1.00592 0.97661 0.98391 1.21718 0.95732 0.93134 0.91914 0.89619 1.58822 1.16029 1.58212 1.03781 0.92269 0.93341 0.94719 0.92554 0.93243 0.90621 0.91893 0.75296 0.90897 0.88483 0.91320 0.92194 0.91776 0.92266 0.92071 0.91923 0.85040 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 2 C 0.24 5.42 2.21 -69.08 -0.15 5.27 16 3 H 0.06 1.36 5.97 -51.93 -0.31 1.05 16 4 C -0.52 -13.24 8.95 -34.44 -0.31 -13.55 16 5 H 0.09 2.27 6.14 -52.49 -0.32 1.95 16 6 C 0.08 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 8 Si 0.88 21.11 24.37 -169.99 -4.14 16.96 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 12 N -0.99 -19.16 2.79 -115.85 -0.32 -19.48 16 13 C 0.09 1.58 9.66 59.85 0.58 2.16 16 14 S 2.79 52.82 6.12 -107.50 -0.66 52.17 16 15 O -0.99 -21.91 16.70 -57.17 -0.95 -22.87 16 16 O -1.00 -19.60 16.08 -57.17 -0.92 -20.51 16 17 N -1.11 -17.48 5.36 -4.89 -0.03 -17.50 16 18 C 0.17 2.30 2.41 -67.93 -0.16 2.13 16 19 H 0.08 1.12 7.50 -51.93 -0.39 0.73 16 20 C -0.15 -2.14 5.53 -26.73 -0.15 -2.29 16 21 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 23 C -0.15 -1.41 5.49 -26.75 -0.15 -1.55 16 24 C 0.09 0.98 2.83 -67.73 -0.19 0.79 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 26 N -0.84 -8.95 9.09 -4.68 -0.04 -8.99 16 27 H 0.06 1.17 6.66 -51.93 -0.35 0.82 16 28 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.05 0.78 6.22 -51.92 -0.32 0.46 16 32 H 0.08 1.25 6.43 -51.93 -0.33 0.91 16 33 H 0.06 0.96 7.02 -51.93 -0.36 0.59 16 34 H 0.41 6.16 8.84 -34.47 -0.30 5.86 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.66 3.78 -51.93 -0.20 1.46 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.34 2.84 9.04 -39.29 -0.36 2.49 16 44 H 0.34 3.63 8.98 -39.29 -0.35 3.27 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -30.99 339.43 -8.56 -39.55 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.75 Total: 11.38 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.63 Total: -11.08 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: 0.38 Total: -70.72 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -1.87 Total: -43.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.96 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.66 Total: 52.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.99 -8.56 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.145 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds