Wall clock time and date at job start Tue Mar 31 2020 09:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47341 * 2 1 4 4 C 1.50702 * 109.47010 * 120.00088 * 2 1 3 5 5 H 1.08001 * 120.00281 * 119.99636 * 4 2 1 6 6 C 1.37873 * 119.99847 * 299.99739 * 4 2 1 7 7 N 1.31520 * 120.00159 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00043 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46943 * 90.00281 * 8 6 4 10 10 H 1.48504 * 109.46955 * 209.99931 * 8 6 4 11 11 H 1.48492 * 109.47228 * 329.99890 * 8 6 4 12 12 N 1.46501 * 109.47027 * 239.99534 * 2 1 3 13 13 C 1.46498 * 120.00118 * 300.00554 * 12 2 1 14 14 S 1.65605 * 119.99922 * 119.99952 * 12 2 1 15 15 O 1.42101 * 106.40129 * 336.46345 * 14 12 2 16 16 O 1.42100 * 106.40455 * 203.54232 * 14 12 2 17 17 N 1.65605 * 107.21451 * 90.00052 * 14 12 2 18 18 C 1.46499 * 119.99754 * 65.00464 * 17 14 12 19 19 H 1.09002 * 109.47391 * 24.99564 * 18 17 14 20 20 C 1.53002 * 109.46799 * 264.99661 * 18 17 14 21 21 C 1.53006 * 109.46711 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47445 * 59.99695 * 21 20 18 23 23 C 1.53002 * 109.47092 * 300.00075 * 22 21 20 24 24 C 1.53000 * 109.46840 * 144.99895 * 18 17 14 25 25 H 1.08992 * 109.47399 * 59.99666 * 24 18 17 26 26 N 1.46905 * 109.47123 * 299.99549 * 24 18 17 27 27 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 300.00311 * 1 2 3 29 29 H 1.08995 * 109.47338 * 59.99825 * 1 2 3 30 30 H 0.96998 * 119.99893 * 179.97438 * 7 6 4 31 31 H 1.09008 * 109.46792 * 269.99529 * 13 12 2 32 32 H 1.09003 * 109.47404 * 29.99601 * 13 12 2 33 33 H 1.09006 * 109.47262 * 150.00106 * 13 12 2 34 34 H 0.97000 * 119.99610 * 245.00076 * 17 14 12 35 35 H 1.09002 * 109.47075 * 299.99543 * 20 18 17 36 36 H 1.08996 * 109.47407 * 60.00500 * 20 18 17 37 37 H 1.09001 * 109.46726 * 179.97438 * 21 20 18 38 38 H 1.09002 * 109.46589 * 299.99365 * 21 20 18 39 39 H 1.09002 * 109.47045 * 59.99942 * 22 21 20 40 40 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46497 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47067 * 299.99853 * 23 22 21 43 43 H 1.00896 * 111.00025 * 180.02562 * 26 24 18 44 44 H 1.00906 * 110.99517 * 303.95857 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2863 15 8 2.6904 1.4971 -2.1194 16 8 2.8227 -0.5647 -3.5259 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8415 19 1 4.6087 -2.0616 -2.5691 20 6 5.0177 -2.0783 -0.4540 21 6 5.6365 -3.4774 -0.4785 22 6 7.1123 -3.3757 -0.8690 23 6 7.2301 -2.7417 -2.2564 24 6 6.6115 -1.3430 -2.2322 25 1 7.1384 -0.7257 -1.5047 26 7 6.7247 -0.7342 -3.5644 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.9039 -0.5274 4.4376 31 1 2.4157 -2.7378 -0.9716 32 1 0.6903 -2.3003 -0.9845 33 1 1.6237 -2.2854 -2.5002 34 1 5.0733 0.6549 -1.5282 35 1 5.5447 -1.4610 0.2735 36 1 3.9663 -2.1505 -0.1757 37 1 5.5528 -3.9289 0.5101 38 1 5.1097 -4.0949 -1.2061 39 1 7.6389 -2.7582 -0.1414 40 1 7.5531 -4.3724 -0.8859 41 1 8.2816 -2.6697 -2.5347 42 1 6.7035 -3.3592 -2.9841 43 1 7.6906 -0.6566 -3.8455 44 1 6.1906 -1.2529 -4.2455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575912755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:37 Heat of formation + Delta-G solvation = -109.312237 kcal Electronic energy + Delta-G solvation = -25753.872358 eV Core-core repulsion = 22252.342252 eV Total energy + Delta-G solvation = -3501.530106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09808 -38.31648 -38.03067 -36.87208 -35.03633 -34.49345 -34.36249 -31.75693 -30.19655 -28.21105 -27.31955 -26.87264 -23.41158 -22.73579 -22.57020 -21.10576 -20.07936 -19.02932 -18.41864 -18.33541 -17.54187 -17.10653 -16.52566 -16.35925 -15.64250 -15.30600 -15.06652 -14.96394 -14.60407 -14.36115 -14.31777 -14.15283 -14.01629 -13.78657 -13.50656 -13.40787 -13.15587 -13.03601 -12.94606 -12.84257 -12.75834 -12.23670 -12.12186 -12.08563 -11.98563 -11.91977 -11.50251 -11.46157 -11.29579 -11.01026 -10.70992 -10.23592 -9.70365 -9.46746 -8.24220 -6.25800 -0.25234 1.31168 1.40837 1.47406 2.02180 2.34514 2.64337 3.10669 3.45215 3.54386 3.75494 3.87731 4.06625 4.17764 4.21928 4.30202 4.33344 4.47332 4.55555 4.59374 4.66345 4.71927 4.72677 4.79783 4.90075 4.93626 4.97387 5.10335 5.19036 5.20869 5.22236 5.31138 5.39695 5.48592 5.54977 5.62289 5.63273 5.87406 6.21291 6.33383 6.41181 6.69264 6.81987 7.38808 8.90232 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.006317 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.709917 B = 4431.409274 C = 5355.310112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.241 3.759 3 H 0.040 0.960 4 C -0.508 4.508 5 H 0.070 0.930 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.919 3.081 9 H -0.264 1.264 10 H -0.300 1.300 11 H -0.259 1.259 12 N -0.989 5.989 13 C 0.089 3.911 14 S 2.800 3.200 15 O -1.021 7.021 16 O -1.002 7.002 17 N -1.102 6.102 18 C 0.166 3.834 19 H 0.083 0.917 20 C -0.144 4.144 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.142 4.142 24 C 0.094 3.906 25 H 0.082 0.918 26 N -0.849 5.849 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.418 0.582 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.352 0.648 44 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 -5.509 -11.669 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.135 3.865 3 H 0.057 0.943 4 C -0.548 4.548 5 H 0.088 0.912 6 C -0.170 4.170 7 N -0.575 5.575 8 Si 0.747 3.253 9 H -0.190 1.190 10 H -0.228 1.228 11 H -0.183 1.183 12 N -0.830 5.830 13 C -0.056 4.056 14 S 2.809 3.191 15 O -1.005 7.005 16 O -0.985 6.985 17 N -0.862 5.862 18 C 0.058 3.942 19 H 0.101 0.899 20 C -0.184 4.184 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.182 4.182 24 C -0.019 4.019 25 H 0.100 0.900 26 N -0.379 5.379 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.252 0.748 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.166 0.834 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.172 -4.506 -12.026 15.222 hybrid contribution 0.114 0.019 1.071 1.078 sum 8.285 -4.487 -10.954 14.449 Atomic orbital electron populations 1.22392 0.97614 1.02320 0.99667 1.18832 0.91941 0.92431 0.83286 0.94276 1.21464 1.30944 1.13276 0.89072 0.91167 1.25475 0.96995 0.98710 0.95840 1.69978 1.47343 1.41877 0.98348 0.86328 0.80235 0.81589 0.77115 1.19009 1.22821 1.18323 1.57372 1.65592 1.22404 1.37588 1.21559 1.02439 0.80326 1.01250 1.01075 0.73056 0.71872 0.73074 1.93524 1.84821 1.34799 1.87361 1.93512 1.86563 1.76275 1.42152 1.55536 1.30189 1.15857 1.84600 1.20833 0.95027 0.81631 0.96683 0.89915 1.22200 1.02550 0.97117 0.96504 1.21497 0.96506 0.95562 1.01769 1.21486 0.95652 1.01423 0.96622 1.22326 1.01725 0.96129 0.98001 1.21604 0.93595 0.94536 0.92186 0.89975 1.58773 1.17289 1.58319 1.03477 0.90991 0.94139 0.92870 0.92700 0.92646 0.90348 0.90098 0.74771 0.92653 0.91286 0.92282 0.91140 0.92149 0.90499 0.90015 0.91233 0.83404 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.60 8.65 71.98 0.62 -5.98 16 2 C 0.24 10.80 2.21 44.25 0.10 10.89 16 3 H 0.04 1.91 5.97 -2.39 -0.01 1.89 16 4 C -0.51 -25.86 8.95 25.60 0.23 -25.63 16 5 H 0.07 3.76 6.14 -2.91 -0.02 3.74 16 6 C 0.03 1.55 5.45 84.65 0.46 2.01 16 7 N -0.94 -54.33 13.96 21.45 0.30 -54.03 16 8 Si 0.92 43.30 24.37 68.60 1.67 44.97 16 9 H -0.26 -11.79 6.87 99.48 0.68 -11.11 16 10 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 11 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 12 N -0.99 -37.71 2.79 -520.44 -1.45 -39.16 16 13 C 0.09 2.88 9.66 127.77 1.23 4.12 16 14 S 2.80 104.03 6.12 -56.49 -0.35 103.68 16 15 O -1.02 -44.95 16.70 -128.00 -2.14 -47.09 16 16 O -1.00 -37.86 16.08 -128.00 -2.06 -39.92 16 17 N -1.10 -34.14 5.36 -169.38 -0.91 -35.04 16 18 C 0.17 4.36 2.41 44.99 0.11 4.47 16 19 H 0.08 2.16 7.50 -2.39 -0.02 2.14 16 20 C -0.14 -4.17 5.53 30.60 0.17 -4.00 16 21 C -0.12 -2.64 5.92 30.60 0.18 -2.46 16 22 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 23 C -0.14 -2.24 5.49 30.58 0.17 -2.07 16 24 C 0.09 1.92 2.83 44.90 0.13 2.04 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 N -0.85 -16.17 9.09 -168.73 -1.53 -17.70 16 27 H 0.07 2.72 6.66 -2.39 -0.02 2.71 16 28 H 0.04 1.72 3.27 -2.38 -0.01 1.71 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.06 1.71 6.22 -2.38 -0.01 1.70 16 32 H 0.08 2.47 6.43 -2.39 -0.02 2.45 16 33 H 0.08 2.31 7.02 -2.38 -0.02 2.30 16 34 H 0.42 12.32 8.84 -96.74 -0.85 11.47 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 2.39 3.78 -2.39 -0.01 2.39 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.35 4.99 9.04 -89.70 -0.81 4.18 16 44 H 0.34 6.46 8.98 -89.69 -0.81 5.66 16 Total: -1.00 -65.57 339.43 -4.39 -69.96 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -1.51 Total: 32.78 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.58 Total: -18.45 kcal Atomic # 7 Polarization: -142.34 SS G_CDS: -3.59 Total: -145.93 kcal Atomic # 8 Polarization: -82.81 SS G_CDS: -4.20 Total: -87.01 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.67 Total: 44.97 kcal Atomic # 16 Polarization: 104.03 SS G_CDS: -0.35 Total: 103.68 kcal Total: -65.57 -4.39 -69.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.356 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds