Wall clock time and date at job start Tue Mar 31 2020 08:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47514 * 2 1 4 4 C 1.52998 * 109.47220 * 239.99678 * 2 1 3 5 5 C 1.53001 * 109.47018 * 120.00091 * 2 1 3 6 6 N 1.46901 * 109.47095 * 83.90896 * 5 2 1 7 7 C 1.46896 * 111.00156 * 314.84666 * 6 5 2 8 8 C 1.50703 * 109.46790 * 284.81875 * 7 6 5 9 9 H 1.07997 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99612 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00088 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99865 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46978 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47300 * 119.99551 * 12 10 8 15 15 H 1.48502 * 109.47350 * 239.99895 * 12 10 8 16 16 C 1.46903 * 111.00080 * 78.80511 * 6 5 2 17 17 C 1.52993 * 109.47650 * 82.61245 * 16 6 5 18 18 H 1.09002 * 115.55488 * 292.21940 * 17 16 6 19 19 C 1.53001 * 117.50081 * 146.54156 * 17 16 6 20 20 H 1.08999 * 117.50258 * 145.02141 * 19 17 16 21 21 C 1.50702 * 117.49544 * 0.02562 * 19 17 16 22 22 O 1.20826 * 120.00172 * 359.97438 * 21 19 17 23 23 O 1.34223 * 120.00092 * 179.97438 * 21 19 17 24 24 C 1.52999 * 117.49649 * 77.88239 * 17 16 6 25 25 F 1.39900 * 117.50090 * 214.98072 * 24 17 16 26 26 F 1.39909 * 117.50104 * 359.97438 * 24 17 16 27 27 H 1.09002 * 109.46762 * 301.86830 * 1 2 3 28 28 H 1.09005 * 109.46625 * 61.86304 * 1 2 3 29 29 H 1.08997 * 109.47423 * 181.86276 * 1 2 3 30 30 H 1.09002 * 109.47199 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46966 * 299.99966 * 3 2 1 32 32 H 1.09000 * 109.47016 * 59.99999 * 3 2 1 33 33 H 1.09005 * 109.47625 * 284.62643 * 4 2 1 34 34 H 1.09004 * 109.47248 * 44.62266 * 4 2 1 35 35 H 1.09000 * 109.47491 * 164.62390 * 4 2 1 36 36 H 1.09003 * 109.46950 * 323.90966 * 5 2 1 37 37 H 1.09004 * 109.47604 * 203.90923 * 5 2 1 38 38 H 1.09001 * 109.46858 * 44.81661 * 7 6 5 39 39 H 1.08998 * 109.47344 * 164.82279 * 7 6 5 40 40 H 0.96997 * 120.00099 * 179.97438 * 11 10 8 41 41 H 1.08997 * 109.46929 * 202.61719 * 16 6 5 42 42 H 1.09001 * 109.46497 * 322.61481 * 16 6 5 43 43 H 0.96701 * 117.00305 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 2.0646 -2.1693 1.0029 7 6 0.8258 -2.6134 0.3503 8 6 -0.2916 -2.6429 1.3611 9 1 -0.1006 -2.3596 2.3856 10 6 -1.5578 -3.0316 0.9779 11 7 -1.7904 -3.3761 -0.2698 12 14 -2.9430 -3.0674 2.2306 13 1 -2.4248 -2.6373 3.5540 14 1 -4.0248 -2.1462 1.7989 15 1 -3.4806 -4.4478 2.3348 16 6 3.2422 -2.5485 0.2107 17 6 4.4529 -2.6949 1.1345 18 1 4.8133 -1.7712 1.5873 19 6 5.4931 -3.7571 0.7729 20 1 6.5378 -3.5323 0.9880 21 6 5.2469 -4.5786 -0.4663 22 8 4.2570 -4.3862 -1.1319 23 8 6.1273 -5.5240 -0.8306 24 6 4.5574 -3.9760 1.9644 25 9 5.1086 -3.8723 3.2460 26 9 3.5382 -4.9237 1.8209 27 1 -0.3633 0.5426 0.8728 28 1 -0.3633 0.4847 -0.9063 29 1 -0.3634 -1.0271 0.0334 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.9165 -1.7970 -1.1236 34 1 1.4715 -0.3894 -2.1180 35 1 3.0953 -0.4915 -1.3961 36 1 1.3781 -0.5067 2.0883 37 1 3.0469 -0.3753 1.4831 38 1 0.5706 -1.9227 -0.4533 39 1 0.9698 -3.6124 -0.0611 40 1 -2.6811 -3.6499 -0.5394 41 1 3.0518 -3.4968 -0.2919 42 1 3.4436 -1.7773 -0.5328 43 1 5.9262 -6.0255 -1.6326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589780171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:33 Heat of formation + Delta-G solvation = -92.838367 kcal Electronic energy + Delta-G solvation = -27618.085307 eV Core-core repulsion = 23531.136424 eV Total energy + Delta-G solvation = -4086.948883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.52095 -47.16947 -40.61083 -39.35785 -36.85881 -35.68628 -33.39838 -32.44233 -28.46532 -27.67701 -26.28524 -26.05085 -24.98736 -23.85575 -21.56267 -20.63098 -20.18666 -18.49870 -18.23392 -17.61069 -16.97106 -16.28126 -16.16740 -15.66147 -15.11923 -14.92399 -14.85725 -14.26630 -13.99804 -13.74704 -13.62266 -13.50154 -13.26288 -13.17427 -12.77481 -12.72371 -11.96680 -11.83181 -11.69138 -11.40522 -11.32154 -11.14642 -11.09989 -10.79127 -10.75106 -10.64135 -10.54917 -10.27410 -9.98169 -9.80097 -9.66838 -9.39874 -9.16575 -9.00216 -8.34139 -6.92831 -5.95579 -3.94389 1.73914 2.65634 3.13148 3.27105 3.35003 3.43179 3.48166 3.98014 4.48754 4.53330 4.66721 4.97910 5.19783 5.37163 5.38481 5.43533 5.45779 5.53266 5.65259 5.74953 5.96246 6.04975 6.14080 6.17394 6.18793 6.24167 6.37633 6.53586 6.72438 6.74325 6.76953 6.83846 6.96458 7.06985 7.37005 7.43173 7.78024 7.82809 7.91006 8.22034 8.31187 8.63269 9.12672 9.66885 11.13276 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.005673 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.699516 B = 4934.418050 C = 5705.509429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.167 4.167 5 C 0.075 3.925 6 N -0.529 5.529 7 C 0.158 3.842 8 C -0.492 4.492 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.019 3.981 17 C -0.091 4.091 18 H 0.135 0.865 19 C -0.183 4.183 20 H 0.155 0.845 21 C 0.509 3.491 22 O -0.477 6.477 23 O -0.513 6.513 24 C 0.245 3.755 25 F -0.156 7.156 26 F -0.138 7.138 27 H 0.039 0.961 28 H 0.027 0.973 29 H 0.142 0.858 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.122 0.878 42 H 0.075 0.925 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.862 2.178 -0.951 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.096 4.096 3 C -0.192 4.192 4 C -0.223 4.223 5 C -0.054 4.054 6 N -0.251 5.251 7 C 0.034 3.966 8 C -0.531 4.531 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.109 4.109 17 C -0.111 4.111 18 H 0.152 0.848 19 C -0.203 4.203 20 H 0.173 0.827 21 C 0.350 3.650 22 O -0.364 6.364 23 O -0.325 6.325 24 C 0.208 3.792 25 F -0.137 7.137 26 F -0.118 7.118 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.160 0.840 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.139 0.861 42 H 0.093 0.907 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 15.520 2.110 -0.397 15.668 hybrid contribution -0.857 -0.024 -0.384 0.940 sum 14.663 2.087 -0.781 14.831 Atomic orbital electron populations 1.22844 0.93198 1.08557 0.98778 1.21072 0.97670 0.94355 0.96484 1.21867 0.99601 0.96796 1.00961 1.22790 0.98535 1.03678 0.97316 1.22160 0.98807 0.87978 0.96470 1.62166 1.03095 1.12128 1.47743 1.20694 0.84697 0.96176 0.95007 1.21141 0.92544 1.43168 0.96207 0.92036 1.24932 0.98651 0.95825 0.95208 1.69958 1.21710 1.46124 1.15978 0.86560 0.82237 0.77522 0.81871 1.19731 1.21227 1.21203 1.23249 0.88653 1.05788 0.93173 1.23989 0.96730 0.92718 0.97616 0.84761 1.23397 1.01649 1.02620 0.92673 0.82692 1.21907 0.79985 0.77912 0.85156 1.90669 1.26995 1.65721 1.52979 1.84464 1.51610 1.48029 1.48426 1.19580 0.87061 0.94862 0.77742 1.93035 1.84931 1.96255 1.39436 1.93130 1.58660 1.64806 1.95175 0.94207 0.95382 0.84032 0.93726 0.93540 0.93140 0.88760 0.93597 0.93825 0.90817 0.93439 0.93618 0.95824 0.93074 0.86058 0.90708 0.72561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 7.59 37.16 0.28 -3.38 16 2 C -0.09 -1.67 0.77 -154.51 -0.12 -1.79 16 3 C -0.13 -1.97 8.30 37.16 0.31 -1.66 16 4 C -0.17 -2.95 6.23 37.16 0.23 -2.72 16 5 C 0.07 1.37 4.82 -3.82 -0.02 1.35 16 6 N -0.53 -10.88 4.52 -236.07 -1.07 -11.94 16 7 C 0.16 3.90 3.25 -4.98 -0.02 3.89 16 8 C -0.49 -13.29 7.14 -34.44 -0.25 -13.54 16 9 H 0.06 1.70 7.77 -52.49 -0.41 1.29 16 10 C 0.05 1.51 5.01 -17.82 -0.09 1.42 16 11 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 12 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.02 0.33 2.79 -3.83 -0.01 0.32 16 17 C -0.09 -1.28 5.65 -90.62 -0.51 -1.79 16 18 H 0.13 1.56 7.72 -51.93 -0.40 1.16 16 19 C -0.18 -2.17 6.29 -91.73 -0.58 -2.75 16 20 H 0.16 1.28 8.14 -51.93 -0.42 0.86 16 21 C 0.51 6.56 7.73 36.01 0.28 6.84 16 22 O -0.48 -7.75 13.60 -18.75 -0.26 -8.01 16 23 O -0.51 -4.94 13.42 -39.24 -0.53 -5.47 16 24 C 0.24 3.73 5.14 -26.69 -0.14 3.59 16 25 F -0.16 -2.30 17.60 2.25 0.04 -2.26 16 26 F -0.14 -2.61 16.58 2.25 0.04 -2.57 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.14 3.45 2.74 -51.93 -0.14 3.31 16 30 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.89 3.03 -51.93 -0.16 1.74 16 34 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.04 0.67 6.83 -51.93 -0.35 0.32 16 36 H 0.07 1.47 7.76 -51.93 -0.40 1.07 16 37 H 0.05 0.75 7.07 -51.93 -0.37 0.38 16 38 H 0.05 1.15 2.59 -51.93 -0.13 1.01 16 39 H 0.02 0.66 7.55 -51.93 -0.39 0.27 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.12 2.43 3.94 -53.54 -0.21 2.22 16 42 H 0.08 1.25 3.94 -51.93 -0.20 1.04 16 43 H 0.41 2.25 9.10 45.56 0.41 2.66 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -30.98 335.78 -6.47 -37.45 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.85 Total: 6.48 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.62 Total: -10.22 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.33 Total: -37.06 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.78 Total: -13.48 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.08 Total: -4.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.98 -6.47 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589780171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.390 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds