Wall clock time and date at job start Tue Mar 31 2020 08:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47514 * 2 1 4 4 C 1.52998 * 109.47220 * 239.99678 * 2 1 3 5 5 C 1.53001 * 109.47018 * 120.00091 * 2 1 3 6 6 N 1.46901 * 109.47095 * 83.90896 * 5 2 1 7 7 C 1.46896 * 111.00156 * 314.84666 * 6 5 2 8 8 C 1.50703 * 109.46790 * 284.81875 * 7 6 5 9 9 H 1.07997 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99612 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00088 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99865 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46978 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47300 * 119.99551 * 12 10 8 15 15 H 1.48502 * 109.47350 * 239.99895 * 12 10 8 16 16 C 1.46903 * 111.00080 * 78.80511 * 6 5 2 17 17 C 1.52993 * 109.47650 * 82.61245 * 16 6 5 18 18 H 1.09002 * 115.55488 * 292.21940 * 17 16 6 19 19 C 1.53001 * 117.50081 * 146.54156 * 17 16 6 20 20 H 1.08999 * 117.50258 * 145.02141 * 19 17 16 21 21 C 1.50702 * 117.49544 * 0.02562 * 19 17 16 22 22 O 1.20826 * 120.00172 * 359.97438 * 21 19 17 23 23 O 1.34223 * 120.00092 * 179.97438 * 21 19 17 24 24 C 1.52999 * 117.49649 * 77.88239 * 17 16 6 25 25 F 1.39900 * 117.50090 * 214.98072 * 24 17 16 26 26 F 1.39909 * 117.50104 * 359.97438 * 24 17 16 27 27 H 1.09002 * 109.46762 * 301.86830 * 1 2 3 28 28 H 1.09005 * 109.46625 * 61.86304 * 1 2 3 29 29 H 1.08997 * 109.47423 * 181.86276 * 1 2 3 30 30 H 1.09002 * 109.47199 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46966 * 299.99966 * 3 2 1 32 32 H 1.09000 * 109.47016 * 59.99999 * 3 2 1 33 33 H 1.09005 * 109.47625 * 284.62643 * 4 2 1 34 34 H 1.09004 * 109.47248 * 44.62266 * 4 2 1 35 35 H 1.09000 * 109.47491 * 164.62390 * 4 2 1 36 36 H 1.09003 * 109.46950 * 323.90966 * 5 2 1 37 37 H 1.09004 * 109.47604 * 203.90923 * 5 2 1 38 38 H 1.09001 * 109.46858 * 44.81661 * 7 6 5 39 39 H 1.08998 * 109.47344 * 164.82279 * 7 6 5 40 40 H 0.96997 * 120.00099 * 179.97438 * 11 10 8 41 41 H 1.08997 * 109.46929 * 202.61719 * 16 6 5 42 42 H 1.09001 * 109.46497 * 322.61481 * 16 6 5 43 43 H 0.96701 * 117.00305 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 2.0646 -2.1693 1.0029 7 6 0.8258 -2.6134 0.3503 8 6 -0.2916 -2.6429 1.3611 9 1 -0.1006 -2.3596 2.3856 10 6 -1.5578 -3.0316 0.9779 11 7 -1.7904 -3.3761 -0.2698 12 14 -2.9430 -3.0674 2.2306 13 1 -2.4248 -2.6373 3.5540 14 1 -4.0248 -2.1462 1.7989 15 1 -3.4806 -4.4478 2.3348 16 6 3.2422 -2.5485 0.2107 17 6 4.4529 -2.6949 1.1345 18 1 4.8133 -1.7712 1.5873 19 6 5.4931 -3.7571 0.7729 20 1 6.5378 -3.5323 0.9880 21 6 5.2469 -4.5786 -0.4663 22 8 4.2570 -4.3862 -1.1319 23 8 6.1273 -5.5240 -0.8306 24 6 4.5574 -3.9760 1.9644 25 9 5.1086 -3.8723 3.2460 26 9 3.5382 -4.9237 1.8209 27 1 -0.3633 0.5426 0.8728 28 1 -0.3633 0.4847 -0.9063 29 1 -0.3634 -1.0271 0.0334 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.9165 -1.7970 -1.1236 34 1 1.4715 -0.3894 -2.1180 35 1 3.0953 -0.4915 -1.3961 36 1 1.3781 -0.5067 2.0883 37 1 3.0469 -0.3753 1.4831 38 1 0.5706 -1.9227 -0.4533 39 1 0.9698 -3.6124 -0.0611 40 1 -2.6811 -3.6499 -0.5394 41 1 3.0518 -3.4968 -0.2919 42 1 3.4436 -1.7773 -0.5328 43 1 5.9262 -6.0255 -1.6326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589780171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:32 Heat of formation + Delta-G solvation = -114.021659 kcal Electronic energy + Delta-G solvation = -27619.003884 eV Core-core repulsion = 23531.136424 eV Total energy + Delta-G solvation = -4087.867460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.71722 -48.40388 -41.70557 -40.79732 -37.86227 -36.76495 -35.13473 -34.24885 -30.21722 -29.14249 -27.61450 -27.53859 -26.29040 -25.51328 -22.96140 -21.89499 -21.48084 -19.68416 -19.51800 -18.72957 -18.40163 -17.97223 -17.37227 -16.82331 -16.70437 -16.47452 -16.16500 -15.82529 -15.47637 -15.04868 -14.99341 -14.74869 -14.57081 -14.35301 -14.33450 -13.96254 -13.58373 -13.14880 -13.05079 -12.95971 -12.73272 -12.59022 -12.54106 -12.38191 -12.33424 -12.18610 -12.06611 -11.92654 -11.52589 -11.32663 -11.02012 -10.95931 -10.82197 -10.65452 -10.46513 -8.57018 -8.07394 -6.13651 0.69683 1.38975 1.41451 1.52713 1.74800 2.07989 2.17759 2.44967 2.90869 3.22476 3.47400 3.54483 3.75501 4.02837 4.06819 4.14338 4.25514 4.33801 4.43188 4.58387 4.59544 4.74550 4.76826 4.92322 4.93460 5.00059 5.13840 5.14780 5.17092 5.23183 5.32198 5.43673 5.49531 5.55713 5.60249 5.74875 5.81172 6.05161 6.26315 6.60057 6.80652 6.92097 7.01257 7.51702 8.99737 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.005673 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.699516 B = 4934.418050 C = 5705.509429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.162 4.162 5 C 0.076 3.924 6 N -0.541 5.541 7 C 0.178 3.822 8 C -0.495 4.495 9 H 0.051 0.949 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.947 3.053 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.286 1.286 16 C 0.022 3.978 17 C -0.094 4.094 18 H 0.170 0.830 19 C -0.145 4.145 20 H 0.204 0.796 21 C 0.508 3.492 22 O -0.517 6.517 23 O -0.500 6.500 24 C 0.214 3.786 25 F -0.155 7.155 26 F -0.170 7.170 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.048 0.952 39 H -0.025 1.025 40 H 0.260 0.740 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.446 3.833 -0.395 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.093 4.093 3 C -0.184 4.184 4 C -0.219 4.219 5 C -0.053 4.053 6 N -0.264 5.264 7 C 0.053 3.947 8 C -0.533 4.533 9 H 0.069 0.931 10 C -0.190 4.190 11 N -0.571 5.571 12 Si 0.774 3.226 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.212 1.212 16 C -0.105 4.105 17 C -0.113 4.113 18 H 0.187 0.813 19 C -0.165 4.165 20 H 0.221 0.779 21 C 0.351 3.649 22 O -0.407 6.407 23 O -0.314 6.314 24 C 0.177 3.823 25 F -0.135 7.135 26 F -0.151 7.151 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.065 0.935 39 H -0.007 1.007 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 18.141 3.753 0.161 18.526 hybrid contribution -1.608 -0.600 -0.596 1.817 sum 16.533 3.153 -0.435 16.836 Atomic orbital electron populations 1.22741 0.95902 1.05955 0.98805 1.21028 0.95427 0.96728 0.96089 1.21784 1.01173 0.93938 1.01555 1.22690 1.00355 1.01684 0.97127 1.22198 1.00490 0.86569 0.96015 1.62019 1.02473 1.13868 1.48010 1.20328 0.86230 0.93623 0.94510 1.21351 0.93597 1.42389 0.96009 0.93122 1.25627 1.00872 0.95716 0.96741 1.70070 1.22122 1.47273 1.17613 0.85656 0.79647 0.77422 0.79886 1.19244 1.20465 1.21203 1.23117 0.88680 1.04737 0.93963 1.24001 0.96229 0.94100 0.96969 0.81315 1.23513 1.03098 0.99830 0.90054 0.77875 1.22155 0.79518 0.78095 0.85135 1.90690 1.28587 1.66930 1.54462 1.84420 1.50325 1.47187 1.49487 1.19962 0.88184 0.95329 0.78872 1.93030 1.84735 1.96248 1.39474 1.93059 1.60542 1.66094 1.95398 0.94271 0.95202 0.87814 0.91116 0.93072 0.92542 0.91728 0.94088 0.90807 0.92903 0.89660 0.93536 1.00711 0.93122 0.88824 0.89493 0.70371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.37 7.59 71.98 0.55 -6.83 16 2 C -0.09 -3.10 0.77 -52.18 -0.04 -3.14 16 3 C -0.13 -3.27 8.30 71.98 0.60 -2.67 16 4 C -0.16 -5.57 6.23 71.98 0.45 -5.12 16 5 C 0.08 2.67 4.82 86.30 0.42 3.08 16 6 N -0.54 -22.46 4.52 -900.80 -4.07 -26.53 16 7 C 0.18 9.23 3.25 85.56 0.28 9.51 16 8 C -0.49 -27.80 7.14 25.60 0.18 -27.62 16 9 H 0.05 2.89 7.77 -2.91 -0.02 2.87 16 10 C 0.01 0.46 5.01 84.66 0.42 0.88 16 11 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 12 Si 0.95 45.44 29.54 68.60 2.03 47.46 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 16 C 0.02 0.75 2.79 86.30 0.24 0.99 16 17 C -0.09 -2.40 5.65 -10.80 -0.06 -2.46 16 18 H 0.17 3.12 7.72 -2.39 -0.02 3.10 16 19 C -0.14 -3.00 6.29 -11.51 -0.07 -3.07 16 20 H 0.20 2.22 8.14 -2.39 -0.02 2.20 16 21 C 0.51 12.25 7.73 71.24 0.55 12.80 16 22 O -0.52 -16.89 13.60 21.97 0.30 -16.59 16 23 O -0.50 -8.41 13.42 -51.35 -0.69 -9.10 16 24 C 0.21 6.21 5.14 30.62 0.16 6.37 16 25 F -0.15 -4.27 17.60 44.97 0.79 -3.48 16 26 F -0.17 -6.65 16.58 44.97 0.75 -5.91 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.03 1.17 8.12 -2.38 -0.02 1.15 16 29 H 0.10 5.23 2.74 -2.39 -0.01 5.22 16 30 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.06 2.64 3.03 -2.38 -0.01 2.63 16 34 H 0.04 1.42 8.03 -2.39 -0.02 1.40 16 35 H 0.07 2.06 6.83 -2.39 -0.02 2.04 16 36 H 0.05 2.08 7.76 -2.39 -0.02 2.06 16 37 H 0.09 2.36 7.07 -2.39 -0.02 2.34 16 38 H 0.05 2.45 2.59 -2.39 -0.01 2.44 16 39 H -0.03 -1.53 7.55 -2.39 -0.02 -1.55 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.09 3.90 3.94 -27.81 -0.11 3.79 16 42 H 0.09 2.75 3.94 -2.39 -0.01 2.74 16 43 H 0.43 3.83 9.10 -74.06 -0.67 3.16 16 Total: -1.00 -71.91 335.78 3.34 -68.56 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.29 Total: 18.27 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 3.67 Total: -17.26 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -3.79 Total: -81.97 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.39 Total: -25.69 kcal Atomic # 9 Polarization: -10.92 SS G_CDS: 1.54 Total: -9.39 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.91 3.34 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589780171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.457 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds