Wall clock time and date at job start Tue Mar 31 2020 08:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47458 * 2 1 4 4 C 1.53003 * 109.46928 * 239.99899 * 2 1 3 5 5 C 1.53002 * 109.46726 * 120.00167 * 2 1 3 6 6 N 1.46900 * 109.47267 * 84.49050 * 5 2 1 7 7 C 1.46901 * 110.99951 * 315.10981 * 6 5 2 8 8 C 1.50701 * 109.47024 * 283.34017 * 7 6 5 9 9 H 1.08003 * 119.99919 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00196 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00309 * 179.72767 * 10 8 7 12 12 Si 1.86804 * 119.99799 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47246 * 90.00103 * 12 10 8 14 14 H 1.48503 * 109.46889 * 209.99974 * 12 10 8 15 15 H 1.48501 * 109.47423 * 329.99829 * 12 10 8 16 16 C 1.46904 * 110.99784 * 79.06162 * 6 5 2 17 17 C 1.53004 * 109.47048 * 86.18567 * 16 6 5 18 18 H 1.08999 * 115.54621 * 281.29341 * 17 16 6 19 19 C 1.53000 * 117.49898 * 135.62426 * 17 16 6 20 20 H 1.09005 * 117.49698 * 359.97438 * 19 17 16 21 21 C 1.50702 * 117.49866 * 145.01885 * 19 17 16 22 22 O 1.20825 * 119.99887 * 6.91386 * 21 19 17 23 23 O 1.34222 * 119.99834 * 186.91042 * 21 19 17 24 24 C 1.52998 * 117.49937 * 66.96397 * 17 16 6 25 25 F 1.39904 * 117.49903 * 214.97899 * 24 17 16 26 26 F 1.39901 * 117.49889 * 0.02562 * 24 17 16 27 27 H 1.09008 * 109.47016 * 301.64888 * 1 2 3 28 28 H 1.09002 * 109.47351 * 61.64128 * 1 2 3 29 29 H 1.08991 * 109.47911 * 181.64783 * 1 2 3 30 30 H 1.09002 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46633 * 300.00000 * 3 2 1 32 32 H 1.09001 * 109.47017 * 59.99757 * 3 2 1 33 33 H 1.09006 * 109.46829 * 281.58713 * 4 2 1 34 34 H 1.09001 * 109.47001 * 41.58460 * 4 2 1 35 35 H 1.09002 * 109.46996 * 161.58655 * 4 2 1 36 36 H 1.08996 * 109.47065 * 324.48351 * 5 2 1 37 37 H 1.09007 * 109.46792 * 204.48713 * 5 2 1 38 38 H 1.09003 * 109.47204 * 163.34219 * 7 6 5 39 39 H 1.08994 * 109.46963 * 43.33776 * 7 6 5 40 40 H 0.96999 * 120.00347 * 179.97438 * 11 10 8 41 41 H 1.09006 * 109.46964 * 206.18240 * 16 6 5 42 42 H 1.08991 * 109.47491 * 326.18028 * 16 6 5 43 43 H 0.96697 * 117.00023 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2493 6 7 2.0777 -2.1682 0.9982 7 6 0.8483 -2.6193 0.3325 8 6 -0.2696 -2.6954 1.3403 9 1 -0.0853 -2.4344 2.3720 10 6 -1.5276 -3.0983 0.9453 11 7 -2.5018 -3.1699 1.8257 12 14 -1.8464 -3.5492 -0.8393 13 1 -1.5914 -4.9987 -1.0368 14 1 -3.2587 -3.2438 -1.1822 15 1 -0.9428 -2.7634 -1.7175 16 6 3.2654 -2.5358 0.2156 17 6 4.4478 -2.7633 1.1596 18 1 4.9375 -1.8608 1.5256 19 6 5.3254 -3.9913 0.9094 20 1 5.0601 -4.6375 0.0725 21 6 6.8006 -3.8609 1.1884 22 8 7.2305 -2.8596 1.7105 23 8 7.6369 -4.8571 0.8570 24 6 4.3741 -3.9614 2.1083 25 9 4.9408 -3.8150 3.3790 26 9 3.2309 -4.7654 2.0458 27 1 -0.3633 0.5393 0.8749 28 1 -0.3634 0.4881 -0.9043 29 1 -0.3634 -1.0271 0.0295 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.9664 -1.7989 -1.1021 34 1 1.4363 -0.4300 -2.1088 35 1 3.0804 -0.4489 -1.4268 36 1 1.3724 -0.5150 2.0858 37 1 3.0428 -0.3678 1.4890 38 1 1.0120 -3.6047 -0.1037 39 1 0.5811 -1.9135 -0.4539 40 1 -3.3869 -3.4530 1.5478 41 1 3.0643 -3.4507 -0.3419 42 1 3.5053 -1.7318 -0.4801 43 1 8.5744 -4.7275 1.0553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589780174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:42 Heat of formation + Delta-G solvation = -101.590619 kcal Electronic energy + Delta-G solvation = -27262.900296 eV Core-core repulsion = 23175.571887 eV Total energy + Delta-G solvation = -4087.328409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.48666 -47.12367 -40.58012 -39.74423 -36.90360 -35.95762 -33.57287 -32.48747 -29.10726 -27.98844 -26.59351 -26.30907 -25.02841 -23.82405 -21.46546 -20.65039 -20.24586 -18.61703 -18.40151 -17.79013 -17.07945 -16.76089 -16.00915 -15.92768 -15.24715 -15.15355 -14.93215 -14.47879 -14.11616 -13.72713 -13.69831 -13.53036 -13.30040 -13.20019 -13.13133 -12.68439 -12.20096 -11.96292 -11.87750 -11.68360 -11.44228 -11.37809 -11.07168 -11.02482 -10.90989 -10.85217 -10.68701 -10.60522 -10.29137 -9.99190 -9.85011 -9.76035 -9.44672 -9.26763 -8.55816 -7.23722 -6.04716 -3.99222 1.61670 2.51134 3.10933 3.21882 3.25064 3.31255 3.34310 3.99936 4.38795 4.46324 4.63775 4.77946 4.96740 5.19089 5.25128 5.26117 5.33041 5.39884 5.42415 5.59816 5.69472 5.85695 5.95133 5.98508 6.02187 6.06375 6.15726 6.17115 6.33754 6.42342 6.51779 6.57725 6.72123 6.84504 6.87323 6.92344 7.42299 7.58633 7.63467 7.84361 7.96506 8.66479 9.08532 9.55699 11.08677 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.005159 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.923983 B = 5425.753406 C = 6317.714929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.170 4.170 5 C 0.075 3.925 6 N -0.516 5.516 7 C 0.127 3.873 8 C -0.493 4.493 9 H 0.081 0.919 10 C 0.070 3.930 11 N -0.898 5.898 12 Si 0.860 3.140 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.050 3.950 17 C -0.095 4.095 18 H 0.138 0.862 19 C -0.186 4.186 20 H 0.157 0.843 21 C 0.514 3.486 22 O -0.500 6.500 23 O -0.509 6.509 24 C 0.256 3.744 25 F -0.156 7.156 26 F -0.129 7.129 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.123 0.877 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.041 0.959 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 1.447 -5.807 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.227 4.227 5 C -0.054 4.054 6 N -0.238 5.238 7 C 0.002 3.998 8 C -0.531 4.531 9 H 0.099 0.901 10 C -0.132 4.132 11 N -0.537 5.537 12 Si 0.687 3.313 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.190 1.190 16 C -0.078 4.078 17 C -0.115 4.115 18 H 0.156 0.844 19 C -0.207 4.207 20 H 0.175 0.825 21 C 0.356 3.644 22 O -0.387 6.387 23 O -0.321 6.321 24 C 0.219 3.781 25 F -0.137 7.137 26 F -0.109 7.109 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 15.874 1.346 -5.223 16.765 hybrid contribution 0.278 -0.007 -1.382 1.410 sum 16.152 1.338 -6.605 17.501 Atomic orbital electron populations 1.22739 0.93296 1.07253 0.99641 1.21090 0.97539 0.94907 0.96278 1.21857 0.99841 0.96283 1.01268 1.22814 0.99374 1.02817 0.97676 1.22221 0.99767 0.86631 0.96748 1.62005 1.01629 1.13430 1.46694 1.21183 0.87637 0.95143 0.95859 1.20928 0.91502 1.43850 0.96857 0.90120 1.24849 0.96240 0.95499 0.96569 1.69873 1.02006 1.48194 1.33624 0.87118 0.77890 0.79535 0.86741 1.20205 1.21181 1.18965 1.22425 0.89771 1.02306 0.93334 1.23949 0.97115 0.92757 0.97694 0.84447 1.23468 0.87442 1.06633 1.03133 0.82539 1.21849 0.88070 0.80135 0.74386 1.90749 1.78049 1.30658 1.39281 1.84490 1.23892 1.45877 1.77795 1.19419 0.83357 0.97723 0.77642 1.93051 1.84035 1.95778 1.40791 1.93164 1.48253 1.73547 1.95951 0.93145 0.95101 0.85946 0.93440 0.93408 0.92784 0.89701 0.93279 0.93254 0.89931 0.92673 0.96556 0.94185 0.92706 0.90594 0.90299 0.72677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 7.63 37.16 0.28 -2.96 16 2 C -0.10 -1.54 0.77 -154.51 -0.12 -1.66 16 3 C -0.13 -1.80 8.27 37.16 0.31 -1.50 16 4 C -0.17 -2.53 6.24 37.16 0.23 -2.30 16 5 C 0.07 1.28 4.85 -3.82 -0.02 1.26 16 6 N -0.52 -9.58 4.48 -236.06 -1.06 -10.63 16 7 C 0.13 2.74 2.30 -4.97 -0.01 2.73 16 8 C -0.49 -13.00 7.88 -34.44 -0.27 -13.27 16 9 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 10 C 0.07 1.91 5.21 -17.82 -0.09 1.82 16 11 N -0.90 -26.61 13.96 55.43 0.77 -25.83 16 12 Si 0.86 20.33 26.86 -169.99 -4.57 15.77 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 16 C 0.05 0.73 3.49 -3.82 -0.01 0.72 16 17 C -0.10 -1.30 5.24 -90.62 -0.47 -1.77 16 18 H 0.14 1.84 7.69 -51.93 -0.40 1.44 16 19 C -0.19 -2.22 5.94 -91.73 -0.54 -2.76 16 20 H 0.16 1.51 8.10 -51.93 -0.42 1.09 16 21 C 0.51 6.01 7.74 36.01 0.28 6.29 16 22 O -0.50 -7.13 17.04 -18.75 -0.32 -7.45 16 23 O -0.51 -4.40 13.42 -39.24 -0.53 -4.92 16 24 C 0.26 3.94 5.12 -26.69 -0.14 3.80 16 25 F -0.16 -2.59 17.13 2.25 0.04 -2.55 16 26 F -0.13 -2.33 17.14 2.25 0.04 -2.29 16 27 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.03 0.53 8.11 -51.93 -0.42 0.11 16 29 H 0.12 2.69 2.27 -51.93 -0.12 2.57 16 30 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.36 2.93 -51.93 -0.15 1.21 16 34 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 35 H 0.05 0.62 6.91 -51.93 -0.36 0.26 16 36 H 0.08 1.60 7.83 -51.93 -0.41 1.20 16 37 H 0.05 0.83 7.52 -51.93 -0.39 0.44 16 38 H 0.02 0.37 6.92 -51.93 -0.36 0.01 16 39 H 0.04 0.86 1.69 -51.93 -0.09 0.77 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.08 1.09 7.21 -51.93 -0.37 0.71 16 42 H 0.08 1.03 4.23 -51.93 -0.22 0.81 16 43 H 0.41 1.65 9.10 45.56 0.41 2.06 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -31.21 338.83 -6.08 -37.28 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.99 Total: 5.12 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.58 Total: -9.60 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.28 Total: -36.47 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.85 Total: -12.37 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.08 Total: -4.84 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.57 Total: 15.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.21 -6.08 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589780174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.306 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds