Wall clock time and date at job start Tue Mar 31 2020 08:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47458 * 2 1 4 4 C 1.53003 * 109.46928 * 239.99899 * 2 1 3 5 5 C 1.53002 * 109.46726 * 120.00167 * 2 1 3 6 6 N 1.46900 * 109.47267 * 84.49050 * 5 2 1 7 7 C 1.46901 * 110.99951 * 315.10981 * 6 5 2 8 8 C 1.50701 * 109.47024 * 283.34017 * 7 6 5 9 9 H 1.08003 * 119.99919 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00196 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00309 * 179.72767 * 10 8 7 12 12 Si 1.86804 * 119.99799 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47246 * 90.00103 * 12 10 8 14 14 H 1.48503 * 109.46889 * 209.99974 * 12 10 8 15 15 H 1.48501 * 109.47423 * 329.99829 * 12 10 8 16 16 C 1.46904 * 110.99784 * 79.06162 * 6 5 2 17 17 C 1.53004 * 109.47048 * 86.18567 * 16 6 5 18 18 H 1.08999 * 115.54621 * 281.29341 * 17 16 6 19 19 C 1.53000 * 117.49898 * 135.62426 * 17 16 6 20 20 H 1.09005 * 117.49698 * 359.97438 * 19 17 16 21 21 C 1.50702 * 117.49866 * 145.01885 * 19 17 16 22 22 O 1.20825 * 119.99887 * 6.91386 * 21 19 17 23 23 O 1.34222 * 119.99834 * 186.91042 * 21 19 17 24 24 C 1.52998 * 117.49937 * 66.96397 * 17 16 6 25 25 F 1.39904 * 117.49903 * 214.97899 * 24 17 16 26 26 F 1.39901 * 117.49889 * 0.02562 * 24 17 16 27 27 H 1.09008 * 109.47016 * 301.64888 * 1 2 3 28 28 H 1.09002 * 109.47351 * 61.64128 * 1 2 3 29 29 H 1.08991 * 109.47911 * 181.64783 * 1 2 3 30 30 H 1.09002 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46633 * 300.00000 * 3 2 1 32 32 H 1.09001 * 109.47017 * 59.99757 * 3 2 1 33 33 H 1.09006 * 109.46829 * 281.58713 * 4 2 1 34 34 H 1.09001 * 109.47001 * 41.58460 * 4 2 1 35 35 H 1.09002 * 109.46996 * 161.58655 * 4 2 1 36 36 H 1.08996 * 109.47065 * 324.48351 * 5 2 1 37 37 H 1.09007 * 109.46792 * 204.48713 * 5 2 1 38 38 H 1.09003 * 109.47204 * 163.34219 * 7 6 5 39 39 H 1.08994 * 109.46963 * 43.33776 * 7 6 5 40 40 H 0.96999 * 120.00347 * 179.97438 * 11 10 8 41 41 H 1.09006 * 109.46964 * 206.18240 * 16 6 5 42 42 H 1.08991 * 109.47491 * 326.18028 * 16 6 5 43 43 H 0.96697 * 117.00023 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2493 6 7 2.0777 -2.1682 0.9982 7 6 0.8483 -2.6193 0.3325 8 6 -0.2696 -2.6954 1.3403 9 1 -0.0853 -2.4344 2.3720 10 6 -1.5276 -3.0983 0.9453 11 7 -2.5018 -3.1699 1.8257 12 14 -1.8464 -3.5492 -0.8393 13 1 -1.5914 -4.9987 -1.0368 14 1 -3.2587 -3.2438 -1.1822 15 1 -0.9428 -2.7634 -1.7175 16 6 3.2654 -2.5358 0.2156 17 6 4.4478 -2.7633 1.1596 18 1 4.9375 -1.8608 1.5256 19 6 5.3254 -3.9913 0.9094 20 1 5.0601 -4.6375 0.0725 21 6 6.8006 -3.8609 1.1884 22 8 7.2305 -2.8596 1.7105 23 8 7.6369 -4.8571 0.8570 24 6 4.3741 -3.9614 2.1083 25 9 4.9408 -3.8150 3.3790 26 9 3.2309 -4.7654 2.0458 27 1 -0.3633 0.5393 0.8749 28 1 -0.3634 0.4881 -0.9043 29 1 -0.3634 -1.0271 0.0295 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.9664 -1.7989 -1.1021 34 1 1.4363 -0.4300 -2.1088 35 1 3.0804 -0.4489 -1.4268 36 1 1.3724 -0.5150 2.0858 37 1 3.0428 -0.3678 1.4890 38 1 1.0120 -3.6047 -0.1037 39 1 0.5811 -1.9135 -0.4539 40 1 -3.3869 -3.4530 1.5478 41 1 3.0643 -3.4507 -0.3419 42 1 3.5053 -1.7318 -0.4801 43 1 8.5744 -4.7275 1.0553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589780174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:41 Heat of formation + Delta-G solvation = -123.353072 kcal Electronic energy + Delta-G solvation = -27263.843987 eV Core-core repulsion = 23175.571887 eV Total energy + Delta-G solvation = -4088.272100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.71702 -48.39172 -41.54599 -41.04329 -37.85165 -36.93220 -35.11830 -34.30706 -30.79759 -29.24161 -27.77653 -27.66189 -26.22887 -25.33879 -22.80775 -21.85998 -21.45921 -19.71986 -19.57900 -18.88354 -18.75841 -18.09732 -17.17126 -17.01960 -16.67420 -16.48302 -16.20679 -15.95571 -15.54242 -15.00283 -14.94056 -14.77095 -14.62336 -14.55623 -14.39940 -14.11566 -13.61747 -13.22466 -13.14696 -12.97223 -12.69427 -12.61422 -12.41825 -12.34098 -12.26878 -12.06263 -11.99959 -11.90842 -11.81033 -11.55739 -11.36612 -11.18501 -11.01386 -10.82974 -10.65028 -8.67297 -8.17413 -6.15312 0.64712 1.38077 1.38313 1.47256 1.64733 2.06477 2.15320 2.39754 2.96458 3.17274 3.38543 3.47499 3.60239 3.95938 4.01761 4.08071 4.16076 4.23055 4.34810 4.51540 4.53766 4.69894 4.71063 4.79690 4.87432 4.90761 4.95486 5.05455 5.08614 5.14886 5.22619 5.29577 5.36648 5.45718 5.45847 5.56480 5.70796 5.88202 6.10431 6.50506 6.77524 6.86335 6.89796 7.43894 9.00289 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.005159 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.923983 B = 5425.753406 C = 6317.714929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.170 4.170 5 C 0.077 3.923 6 N -0.538 5.538 7 C 0.138 3.862 8 C -0.483 4.483 9 H 0.027 0.973 10 C 0.009 3.991 11 N -0.954 5.954 12 Si 0.925 3.075 13 H -0.272 1.272 14 H -0.289 1.289 15 H -0.233 1.233 16 C 0.052 3.948 17 C -0.091 4.091 18 H 0.142 0.858 19 C -0.150 4.150 20 H 0.186 0.814 21 C 0.521 3.479 22 O -0.528 6.528 23 O -0.498 6.498 24 C 0.218 3.782 25 F -0.170 7.170 26 F -0.153 7.153 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.016 0.984 39 H 0.058 0.942 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.225 1.801 -9.151 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.096 4.096 3 C -0.187 4.187 4 C -0.226 4.226 5 C -0.051 4.051 6 N -0.261 5.261 7 C 0.013 3.987 8 C -0.522 4.522 9 H 0.045 0.955 10 C -0.187 4.187 11 N -0.596 5.596 12 Si 0.749 3.251 13 H -0.198 1.198 14 H -0.216 1.216 15 H -0.156 1.156 16 C -0.075 4.075 17 C -0.111 4.111 18 H 0.160 0.840 19 C -0.171 4.171 20 H 0.203 0.797 21 C 0.363 3.637 22 O -0.417 6.417 23 O -0.312 6.312 24 C 0.181 3.819 25 F -0.151 7.151 26 F -0.133 7.133 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 18.783 1.695 -8.579 20.719 hybrid contribution -0.518 -0.113 -0.207 0.570 sum 18.264 1.582 -8.787 20.329 Atomic orbital electron populations 1.22680 0.95907 1.04929 0.99573 1.21054 0.95326 0.96887 0.96312 1.21796 1.01166 0.94101 1.01603 1.22771 1.01454 1.01697 0.96712 1.22159 1.00313 0.86288 0.96368 1.61755 1.01923 1.14414 1.47966 1.20966 0.87510 0.95554 0.94691 1.21124 0.93365 1.42139 0.95566 0.95477 1.25690 0.95917 0.95735 1.01315 1.70060 1.02605 1.50656 1.36322 0.86065 0.77996 0.79624 0.81451 1.19764 1.21559 1.15632 1.22497 0.88070 1.03495 0.93436 1.23899 0.97320 0.93087 0.96761 0.84042 1.23456 0.87288 1.05024 1.01310 0.79664 1.21692 0.88139 0.80095 0.73770 1.90753 1.78536 1.31947 1.40482 1.84437 1.25446 1.44362 1.76965 1.19895 0.84342 0.99552 0.78138 1.93009 1.84141 1.95961 1.41977 1.93104 1.49872 1.74283 1.96057 0.94966 0.93561 0.89087 0.91224 0.92292 0.93357 0.90941 0.92705 0.90032 0.93857 0.90095 0.96605 0.92477 0.92944 0.89884 0.87669 0.70063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.45 7.63 71.98 0.55 -5.90 16 2 C -0.09 -2.80 0.77 -52.18 -0.04 -2.84 16 3 C -0.13 -3.04 8.27 71.98 0.60 -2.44 16 4 C -0.17 -4.33 6.24 71.98 0.45 -3.88 16 5 C 0.08 2.59 4.85 86.30 0.42 3.01 16 6 N -0.54 -19.65 4.48 -900.77 -4.03 -23.69 16 7 C 0.14 5.94 2.30 85.56 0.20 6.13 16 8 C -0.48 -26.60 7.88 25.60 0.20 -26.40 16 9 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 10 C 0.01 0.54 5.21 84.65 0.44 0.98 16 11 N -0.95 -59.48 13.96 21.44 0.30 -59.18 16 12 Si 0.92 42.12 26.86 68.60 1.84 43.96 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.23 -9.33 6.54 99.48 0.65 -8.68 16 16 C 0.05 1.38 3.49 86.30 0.30 1.69 16 17 C -0.09 -2.26 5.24 -10.79 -0.06 -2.32 16 18 H 0.14 3.43 7.69 -2.39 -0.02 3.42 16 19 C -0.15 -3.14 5.94 -11.51 -0.07 -3.21 16 20 H 0.19 2.78 8.10 -2.38 -0.02 2.76 16 21 C 0.52 10.57 7.74 71.24 0.55 11.12 16 22 O -0.53 -13.74 17.04 21.97 0.37 -13.36 16 23 O -0.50 -6.75 13.42 -51.34 -0.69 -7.44 16 24 C 0.22 6.52 5.12 30.62 0.16 6.68 16 25 F -0.17 -5.67 17.13 44.97 0.77 -4.90 16 26 F -0.15 -5.57 17.14 44.97 0.77 -4.80 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 29 H 0.09 3.99 2.27 -2.39 -0.01 3.98 16 30 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 2.04 2.93 -2.38 -0.01 2.03 16 34 H 0.05 1.36 7.98 -2.39 -0.02 1.34 16 35 H 0.08 1.58 6.91 -2.39 -0.02 1.56 16 36 H 0.04 1.77 7.83 -2.39 -0.02 1.75 16 37 H 0.08 2.27 7.52 -2.38 -0.02 2.26 16 38 H 0.02 0.69 6.92 -2.39 -0.02 0.67 16 39 H 0.06 2.32 1.69 -2.39 0.00 2.32 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.08 2.10 7.21 -2.38 -0.02 2.08 16 42 H 0.11 2.26 4.23 -2.39 -0.01 2.25 16 43 H 0.44 1.84 9.10 -74.06 -0.67 1.17 16 Total: -1.00 -72.48 338.83 3.36 -69.12 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.33 Total: 17.69 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 3.70 Total: -17.39 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -3.74 Total: -82.87 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.31 Total: -20.80 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 1.54 Total: -9.70 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.84 Total: 43.96 kcal Total: -72.48 3.36 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589780174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.235 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds