Wall clock time and date at job start Tue Mar 31 2020 08:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 H 1.09000 * 109.46872 * 304.99805 * 3 2 1 5 5 C 1.52998 * 109.47281 * 64.99435 * 3 2 1 6 6 N 1.46496 * 109.47216 * 184.99990 * 3 2 1 7 7 N 1.40584 * 127.37904 * 297.05585 * 6 3 2 8 8 N 1.28919 * 106.81585 * 180.02562 * 7 6 3 9 9 N 1.28422 * 110.31309 * 359.72088 * 8 7 6 10 10 C 1.31476 * 110.50634 * 0.46389 * 9 8 7 11 11 N 1.38383 * 126.43392 * 179.81218 * 10 9 8 12 12 C 1.46902 * 110.99721 * 66.53500 * 11 10 9 13 13 C 1.50704 * 109.47071 * 160.47494 * 12 11 10 14 14 H 1.07999 * 120.00048 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99916 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00371 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99991 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47276 * 89.99691 * 17 15 13 19 19 H 1.48497 * 109.47017 * 209.99507 * 17 15 13 20 20 H 1.48497 * 109.47025 * 329.99550 * 17 15 13 21 21 C 1.46894 * 111.00614 * 302.57888 * 11 10 9 22 22 C 1.50707 * 109.46967 * 293.95437 * 21 11 10 23 23 C 1.34508 * 125.78899 * 89.99390 * 22 21 11 24 24 C 1.41383 * 106.84282 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.83799 * 0.02562 * 24 23 22 26 26 O 1.34299 * 108.42043 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46773 * 60.00281 * 1 2 3 28 28 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46727 * 300.00001 * 1 2 3 30 30 H 1.08995 * 109.47296 * 239.99634 * 2 1 3 31 31 H 1.09000 * 109.46773 * 119.99719 * 2 1 3 32 32 H 1.08999 * 109.47672 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47494 * 300.00750 * 5 3 2 34 34 H 1.09000 * 109.46866 * 60.00366 * 5 3 2 35 35 H 1.09003 * 109.47114 * 280.47051 * 12 11 10 36 36 H 1.09001 * 109.47384 * 40.47071 * 12 11 10 37 37 H 0.96996 * 120.00625 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47691 * 173.95697 * 21 11 10 39 39 H 1.09005 * 109.47227 * 53.94929 * 21 11 10 40 40 H 1.08002 * 126.58258 * 0.06653 * 23 22 21 41 41 H 1.07994 * 126.58399 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.78997 * 180.26479 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.4318 0.9084 0.7858 8 7 5.6019 1.1279 0.2912 9 7 5.5029 1.7401 -0.8334 10 6 4.2408 1.9622 -1.1272 11 7 3.7600 2.6006 -2.2570 12 6 4.0343 1.8107 -3.4648 13 6 3.1176 2.2559 -4.5751 14 1 2.4025 3.0462 -4.4007 15 6 3.1912 1.6535 -5.8131 16 7 4.0617 0.6908 -6.0253 17 14 2.0545 2.2048 -7.1891 18 1 2.7019 3.2979 -7.9581 19 1 1.7797 1.0592 -8.0931 20 1 0.7782 2.6956 -6.6100 21 6 4.3188 3.9540 -2.3749 22 6 3.8140 4.8066 -1.2393 23 6 4.4066 4.9509 -0.0404 24 6 3.5983 5.8334 0.7125 25 6 2.5598 6.1751 -0.0713 26 8 2.6959 5.5504 -1.2523 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9982 3.1544 1.3071 33 1 0.5490 2.1252 1.3969 34 1 2.0699 1.5876 2.1491 35 1 5.0708 1.9587 -3.7681 36 1 3.8645 0.7547 -3.2548 37 1 4.1137 0.2672 -6.8964 38 1 4.0103 4.3931 -3.3237 39 1 5.4069 3.9027 -2.3349 40 1 5.3241 4.4830 0.2846 41 1 3.7797 6.1688 1.7228 42 1 1.7557 6.8427 0.2012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647443282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:52 Heat of formation + Delta-G solvation = 137.433495 kcal Electronic energy + Delta-G solvation = -26273.663556 eV Core-core repulsion = 22679.681948 eV Total energy + Delta-G solvation = -3593.981608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59978 -42.26106 -37.38739 -36.90951 -33.02079 -32.76752 -32.52362 -31.14427 -30.11593 -29.27576 -27.10213 -25.55190 -25.05024 -23.16393 -22.77818 -21.56642 -20.99540 -20.29587 -20.05145 -17.51650 -17.01557 -16.64763 -16.11788 -15.78087 -15.60832 -15.12813 -14.70884 -14.14648 -14.04344 -13.74601 -13.61047 -13.34317 -12.73012 -12.66930 -12.59032 -12.52191 -12.30978 -12.18856 -11.87045 -11.68359 -11.58240 -11.20149 -11.15747 -10.99231 -10.87547 -10.74471 -10.53613 -10.29536 -9.93500 -9.79627 -9.76180 -9.40820 -8.68975 -8.42896 -8.18301 -6.22415 -4.27975 1.46600 1.81383 2.19862 2.70963 2.78957 3.16423 3.21852 3.29006 3.31917 4.10198 4.36424 4.45932 4.77043 4.82149 4.98915 5.08942 5.13207 5.15052 5.18145 5.21388 5.30973 5.44641 5.58483 5.65292 5.66115 5.83879 5.86945 5.91047 5.94236 5.95537 6.00392 6.07963 6.20654 6.23745 6.27178 6.42371 6.62653 6.79882 6.96140 7.31388 7.40833 7.50419 7.81389 8.09209 8.78128 8.97699 9.37714 10.87659 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.006022 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.681102 B = 4648.434311 C = 5403.629352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.156 3.844 4 H 0.121 0.879 5 C -0.158 4.158 6 N -0.358 5.358 7 N -0.099 5.099 8 N -0.048 5.048 9 N -0.360 5.360 10 C 0.436 3.564 11 N -0.466 5.466 12 C 0.207 3.793 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.143 3.857 22 C 0.005 3.995 23 C -0.209 4.209 24 C -0.214 4.214 25 C -0.047 4.047 26 O -0.163 6.163 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 6.174 12.269 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.053 3.947 4 H 0.139 0.861 5 C -0.216 4.216 6 N -0.156 5.156 7 N -0.086 5.086 8 N -0.044 5.044 9 N -0.217 5.217 10 C 0.070 3.930 11 N -0.194 5.194 12 C 0.085 3.915 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.730 3.270 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.017 3.983 22 C -0.047 4.047 23 C -0.230 4.230 24 C -0.233 4.233 25 C -0.115 4.115 26 O -0.058 6.058 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.331 5.590 12.715 15.264 hybrid contribution -0.532 0.370 -0.993 1.186 sum -6.863 5.960 11.722 14.833 Atomic orbital electron populations 1.21767 0.94035 1.02412 1.02384 1.21868 0.96995 0.94536 1.03623 1.21654 0.72808 0.98780 1.01448 0.86083 1.22140 1.02343 1.01046 0.96055 1.51686 1.09077 1.40028 1.14778 1.82376 0.92998 1.19820 1.13382 1.77842 1.15023 1.08633 1.02891 1.74921 1.16524 1.19942 1.10298 1.23425 0.85664 0.93037 0.90839 1.59471 1.56609 1.02422 1.00941 1.19974 0.97496 0.92035 0.82007 1.21008 1.19850 1.20776 0.94282 0.91152 1.24967 0.95703 0.94759 0.98642 1.69957 1.35004 1.24090 1.23757 0.86417 0.80918 0.78245 0.81426 1.20407 1.21136 1.19602 1.20612 0.97553 0.84468 0.95716 1.22577 0.86848 0.97241 0.97990 1.21607 1.03082 1.04013 0.94253 1.21742 0.96967 1.03145 1.01484 1.23967 1.01836 1.01594 0.84126 1.84073 1.38636 1.48299 1.34832 0.91835 0.92014 0.92262 0.90868 0.90822 0.91922 0.90125 0.91302 0.96084 0.94760 0.92451 0.86147 0.89888 0.84271 0.83941 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 37.16 0.36 -1.14 16 2 C -0.13 -1.70 5.72 -26.73 -0.15 -1.86 16 3 C 0.16 2.23 3.24 -67.94 -0.22 2.01 16 4 H 0.12 1.86 7.84 -51.93 -0.41 1.46 16 5 C -0.16 -1.84 9.21 37.16 0.34 -1.50 16 6 N -0.36 -6.33 3.33 -55.36 -0.18 -6.51 16 7 N -0.10 -1.85 13.84 60.35 0.84 -1.01 16 8 N -0.05 -0.97 13.38 60.35 0.81 -0.16 16 9 N -0.36 -7.54 11.94 30.10 0.36 -7.18 16 10 C 0.44 8.64 5.32 -320.42 -1.70 6.93 16 11 N -0.47 -9.42 4.20 -177.59 -0.75 -10.16 16 12 C 0.21 5.01 4.70 -4.97 -0.02 4.98 16 13 C -0.52 -13.22 8.56 -34.44 -0.29 -13.51 16 14 H 0.07 1.74 7.77 -52.49 -0.41 1.34 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 17 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 21 C 0.14 2.61 5.29 -4.98 -0.03 2.58 16 22 C 0.00 0.08 6.35 -35.62 -0.23 -0.15 16 23 C -0.21 -3.29 10.29 -39.70 -0.41 -3.69 16 24 C -0.21 -2.79 10.91 -39.70 -0.43 -3.23 16 25 C -0.05 -0.58 12.09 29.42 0.36 -0.22 16 26 O -0.16 -2.56 10.65 5.73 0.06 -2.50 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.73 6.56 -51.93 -0.34 0.39 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.55 8.00 -51.93 -0.42 0.14 16 36 H 0.03 0.91 7.92 -51.93 -0.41 0.50 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.12 2.20 7.40 -51.93 -0.38 1.82 16 39 H 0.08 1.50 7.90 -51.93 -0.41 1.09 16 40 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.20 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -29.23 359.57 -6.32 -35.55 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.06 Total: 2.82 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.53 Total: -7.25 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 1.81 Total: -49.18 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.06 Total: -2.50 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.23 -6.32 -35.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647443282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.985 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds