Wall clock time and date at job start Tue Mar 31 2020 08:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 H 1.09000 * 109.46872 * 304.99805 * 3 2 1 5 5 C 1.52998 * 109.47281 * 64.99435 * 3 2 1 6 6 N 1.46496 * 109.47216 * 184.99990 * 3 2 1 7 7 N 1.40584 * 127.37904 * 297.05585 * 6 3 2 8 8 N 1.28919 * 106.81585 * 180.02562 * 7 6 3 9 9 N 1.28422 * 110.31309 * 359.72088 * 8 7 6 10 10 C 1.31476 * 110.50634 * 0.46389 * 9 8 7 11 11 N 1.38383 * 126.43392 * 179.81218 * 10 9 8 12 12 C 1.46902 * 110.99721 * 66.53500 * 11 10 9 13 13 C 1.50704 * 109.47071 * 160.47494 * 12 11 10 14 14 H 1.07999 * 120.00048 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99916 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00371 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99991 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47276 * 89.99691 * 17 15 13 19 19 H 1.48497 * 109.47017 * 209.99507 * 17 15 13 20 20 H 1.48497 * 109.47025 * 329.99550 * 17 15 13 21 21 C 1.46894 * 111.00614 * 302.57888 * 11 10 9 22 22 C 1.50707 * 109.46967 * 293.95437 * 21 11 10 23 23 C 1.34508 * 125.78899 * 89.99390 * 22 21 11 24 24 C 1.41383 * 106.84282 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.83799 * 0.02562 * 24 23 22 26 26 O 1.34299 * 108.42043 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46773 * 60.00281 * 1 2 3 28 28 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46727 * 300.00001 * 1 2 3 30 30 H 1.08995 * 109.47296 * 239.99634 * 2 1 3 31 31 H 1.09000 * 109.46773 * 119.99719 * 2 1 3 32 32 H 1.08999 * 109.47672 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47494 * 300.00750 * 5 3 2 34 34 H 1.09000 * 109.46866 * 60.00366 * 5 3 2 35 35 H 1.09003 * 109.47114 * 280.47051 * 12 11 10 36 36 H 1.09001 * 109.47384 * 40.47071 * 12 11 10 37 37 H 0.96996 * 120.00625 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47691 * 173.95697 * 21 11 10 39 39 H 1.09005 * 109.47227 * 53.94929 * 21 11 10 40 40 H 1.08002 * 126.58258 * 0.06653 * 23 22 21 41 41 H 1.07994 * 126.58399 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.78997 * 180.26479 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.4318 0.9084 0.7858 8 7 5.6019 1.1279 0.2912 9 7 5.5029 1.7401 -0.8334 10 6 4.2408 1.9622 -1.1272 11 7 3.7600 2.6006 -2.2570 12 6 4.0343 1.8107 -3.4648 13 6 3.1176 2.2559 -4.5751 14 1 2.4025 3.0462 -4.4007 15 6 3.1912 1.6535 -5.8131 16 7 4.0617 0.6908 -6.0253 17 14 2.0545 2.2048 -7.1891 18 1 2.7019 3.2979 -7.9581 19 1 1.7797 1.0592 -8.0931 20 1 0.7782 2.6956 -6.6100 21 6 4.3188 3.9540 -2.3749 22 6 3.8140 4.8066 -1.2393 23 6 4.4066 4.9509 -0.0404 24 6 3.5983 5.8334 0.7125 25 6 2.5598 6.1751 -0.0713 26 8 2.6959 5.5504 -1.2523 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9982 3.1544 1.3071 33 1 0.5490 2.1252 1.3969 34 1 2.0699 1.5876 2.1491 35 1 5.0708 1.9587 -3.7681 36 1 3.8645 0.7547 -3.2548 37 1 4.1137 0.2672 -6.8964 38 1 4.0103 4.3931 -3.3237 39 1 5.4069 3.9027 -2.3349 40 1 5.3241 4.4830 0.2846 41 1 3.7797 6.1688 1.7228 42 1 1.7557 6.8427 0.2012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647443282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:51 Heat of formation + Delta-G solvation = 120.458109 kcal Electronic energy + Delta-G solvation = -26274.399664 eV Core-core repulsion = 22679.681948 eV Total energy + Delta-G solvation = -3594.717716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.09192 -43.47514 -39.01317 -38.12672 -34.92925 -33.99324 -33.84510 -32.63042 -31.60337 -30.32911 -28.89249 -26.88493 -26.33075 -24.71382 -24.38404 -22.69128 -22.50518 -21.51808 -21.34303 -19.00074 -18.42351 -18.20226 -17.76118 -17.20748 -16.95486 -16.47387 -16.22893 -15.58364 -15.45825 -15.10503 -14.93200 -14.60168 -14.20696 -13.91151 -13.82187 -13.80776 -13.63776 -13.41867 -13.24312 -12.92716 -12.85067 -12.76507 -12.67067 -12.55788 -12.29744 -12.16281 -12.07469 -11.78822 -11.63804 -11.26034 -11.08325 -10.90610 -10.69219 -10.02237 -9.49080 -8.25563 -6.38533 -0.07581 0.55748 0.86011 1.15075 1.46250 1.46270 1.58031 1.62928 2.02606 2.36863 2.67885 3.09050 3.18832 3.54505 3.67577 3.70487 3.92097 4.04293 4.08470 4.11885 4.23234 4.31638 4.32669 4.42184 4.45848 4.52497 4.67439 4.75514 4.87349 4.89557 4.91923 4.95369 4.96732 5.04770 5.12080 5.16117 5.22835 5.38462 5.51856 5.54095 5.67647 5.82969 6.14433 6.23301 6.74323 7.31952 7.39763 8.85669 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.006022 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.681102 B = 4648.434311 C = 5403.629352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.144 3.856 4 H 0.111 0.889 5 C -0.147 4.147 6 N -0.345 5.345 7 N -0.089 5.089 8 N -0.063 5.063 9 N -0.380 5.380 10 C 0.426 3.574 11 N -0.458 5.458 12 C 0.228 3.772 13 C -0.525 4.525 14 H 0.078 0.922 15 C 0.011 3.989 16 N -0.931 5.931 17 Si 0.972 3.028 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.259 1.259 21 C 0.146 3.854 22 C -0.019 4.019 23 C -0.209 4.209 24 C -0.223 4.223 25 C -0.024 4.024 26 O -0.178 6.178 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.070 0.930 35 H -0.007 1.007 36 H 0.001 0.999 37 H 0.267 0.733 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.169 0.831 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 7.888 13.661 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.043 3.957 4 H 0.129 0.871 5 C -0.204 4.204 6 N -0.144 5.144 7 N -0.076 5.076 8 N -0.059 5.059 9 N -0.238 5.238 10 C 0.060 3.940 11 N -0.186 5.186 12 C 0.104 3.896 13 C -0.563 4.563 14 H 0.096 0.904 15 C -0.189 4.189 16 N -0.570 5.570 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.183 1.183 21 C 0.020 3.980 22 C -0.069 4.069 23 C -0.229 4.229 24 C -0.242 4.242 25 C -0.092 4.092 26 O -0.073 6.073 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.010 0.990 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.142 0.858 41 H 0.186 0.814 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.204 7.319 14.138 18.389 hybrid contribution 0.339 -0.144 -1.308 1.359 sum -8.865 7.176 12.830 17.167 Atomic orbital electron populations 1.21760 0.91304 1.03503 1.03380 1.21857 0.99244 0.93113 1.02327 1.22088 0.70682 1.00052 1.02877 0.87100 1.22115 1.04472 0.99916 0.93945 1.51977 1.10181 1.38466 1.13728 1.82275 0.92842 1.19130 1.13393 1.77813 1.15701 1.09431 1.02974 1.74836 1.17649 1.20525 1.10789 1.23313 0.85760 0.93765 0.91212 1.59379 1.56680 1.02840 0.99734 1.19491 0.95714 0.90747 0.83624 1.21269 1.19738 1.20629 0.94642 0.90429 1.25880 0.97100 0.94626 1.01250 1.70096 1.36908 1.25541 1.24457 0.85330 0.79184 0.77767 0.78083 1.19655 1.21173 1.18280 1.20472 0.97225 0.83677 0.96664 1.22056 0.88297 0.98847 0.97743 1.21633 1.02692 1.04172 0.94426 1.22018 0.96685 1.02784 1.02684 1.24910 1.02090 0.99976 0.82214 1.84059 1.38114 1.48567 1.36582 0.92308 0.90968 0.89709 0.93956 0.90303 0.92775 0.86686 0.91132 0.98952 0.98134 0.92401 0.86707 0.90703 0.85849 0.81360 0.73732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.67 71.98 0.70 -1.83 16 2 C -0.13 -3.18 5.72 30.60 0.18 -3.00 16 3 C 0.14 4.01 3.24 44.99 0.15 4.16 16 4 H 0.11 3.36 7.84 -2.39 -0.02 3.34 16 5 C -0.15 -3.03 9.21 71.98 0.66 -2.37 16 6 N -0.35 -12.36 3.33 -329.05 -1.09 -13.45 16 7 N -0.09 -3.36 13.84 37.02 0.51 -2.85 16 8 N -0.06 -2.64 13.38 37.02 0.50 -2.15 16 9 N -0.38 -16.67 11.94 -58.70 -0.70 -17.37 16 10 C 0.43 17.51 5.32 260.65 1.39 18.90 16 11 N -0.46 -19.32 4.20 -715.77 -3.01 -22.33 16 12 C 0.23 11.64 4.70 85.56 0.40 12.05 16 13 C -0.52 -27.28 8.56 25.60 0.22 -27.06 16 14 H 0.08 3.86 7.77 -2.91 -0.02 3.83 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -53.65 13.29 21.45 0.28 -53.36 16 17 Si 0.97 41.33 29.54 68.60 2.03 43.35 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 C 0.15 5.54 5.29 85.56 0.45 5.99 16 22 C -0.02 -0.62 6.35 24.83 0.16 -0.46 16 23 C -0.21 -6.44 10.29 22.19 0.23 -6.21 16 24 C -0.22 -5.19 10.91 22.19 0.24 -4.95 16 25 C -0.02 -0.51 12.09 66.97 0.81 0.30 16 26 O -0.18 -5.24 10.65 -2.41 -0.03 -5.27 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.09 6.56 -2.39 -0.02 1.08 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.60 6.56 -2.39 -0.02 1.58 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H -0.01 -0.41 8.00 -2.39 -0.02 -0.43 16 36 H 0.00 0.03 7.92 -2.39 -0.02 0.01 16 37 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 38 H 0.11 4.38 7.40 -2.39 -0.02 4.37 16 39 H 0.07 2.90 7.90 -2.38 -0.02 2.88 16 40 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.25 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -65.89 359.57 5.55 -60.35 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.02 Total: 16.54 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.04 Total: -3.46 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -3.51 Total: -111.52 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.03 Total: -5.27 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -65.89 5.55 -60.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647443282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.805 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds