Wall clock time and date at job start Tue Mar 31 2020 08:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.09002 * 109.47262 * 55.00164 * 3 2 1 5 5 C 1.52996 * 109.47405 * 294.99862 * 3 2 1 6 6 N 1.46506 * 109.47054 * 174.99737 * 3 2 1 7 7 N 1.40586 * 127.37732 * 57.21483 * 6 3 2 8 8 N 1.28914 * 106.81624 * 180.26616 * 7 6 3 9 9 N 1.28426 * 110.31119 * 359.76407 * 8 7 6 10 10 C 1.31473 * 110.50853 * 0.02562 * 9 8 7 11 11 N 1.38378 * 126.43394 * 179.97438 * 10 9 8 12 12 C 1.46896 * 111.00199 * 67.14582 * 11 10 9 13 13 C 1.50702 * 109.47176 * 160.46698 * 12 11 10 14 14 H 1.07999 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00041 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99852 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47162 * 89.99424 * 17 15 13 19 19 H 1.48496 * 109.47050 * 209.99702 * 17 15 13 20 20 H 1.48499 * 109.47017 * 330.00036 * 17 15 13 21 21 C 1.46905 * 111.00027 * 303.18942 * 11 10 9 22 22 C 1.50694 * 109.47237 * 293.95533 * 21 11 10 23 23 C 1.34513 * 125.78905 * 90.00246 * 22 21 11 24 24 C 1.41378 * 106.84209 * 180.02562 * 23 22 21 25 25 C 1.34514 * 106.84291 * 359.97438 * 24 23 22 26 26 O 1.34303 * 108.41801 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.47016 * 299.99901 * 1 2 3 28 28 H 1.08993 * 109.46738 * 60.00032 * 1 2 3 29 29 H 1.08996 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47016 * 240.00099 * 2 1 3 31 31 H 1.09005 * 109.47181 * 120.00465 * 2 1 3 32 32 H 1.08998 * 109.47371 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47157 * 300.00366 * 5 3 2 34 34 H 1.08995 * 109.46842 * 60.00093 * 5 3 2 35 35 H 1.09002 * 109.47238 * 280.46618 * 12 11 10 36 36 H 1.08996 * 109.46994 * 40.46944 * 12 11 10 37 37 H 0.97003 * 120.00380 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.46971 * 173.95627 * 21 11 10 39 39 H 1.08994 * 109.46892 * 53.96235 * 21 11 10 40 40 H 1.08002 * 126.57835 * 0.04949 * 23 22 21 41 41 H 1.08010 * 126.57837 * 179.97438 * 24 23 22 42 42 H 1.07995 * 125.79013 * 180.26397 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 7 3.5001 1.4442 0.1204 7 7 4.4272 0.8132 -0.7274 8 7 5.5988 1.0660 -0.2529 9 7 5.5054 1.7936 0.8012 10 6 4.2453 2.0549 1.0704 11 7 3.7703 2.8084 2.1293 12 6 4.1528 4.2194 1.9848 13 6 3.2561 5.0734 2.8436 14 1 2.4800 4.6140 3.4377 15 6 3.4272 6.4413 2.8718 16 7 2.6450 7.1865 3.6216 17 14 4.7701 7.2359 1.8448 18 1 4.2302 7.5804 0.5049 19 1 5.2443 8.4706 2.5198 20 1 5.9033 6.2882 1.6930 21 6 4.2358 2.2655 3.4125 22 6 3.6224 0.9072 3.6354 23 6 4.1501 -0.2676 3.2472 24 6 3.2488 -1.2768 3.6568 25 6 2.2244 -0.6585 4.2714 26 8 2.4560 0.6643 4.2553 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9991 3.1540 -1.3075 33 1 2.0699 1.5875 -2.1491 34 1 0.5491 2.1252 -1.3969 35 1 5.1883 4.3491 2.2994 36 1 4.0496 4.5188 0.9419 37 1 2.7651 8.1489 3.6412 38 1 3.9388 2.9352 4.2196 39 1 5.3219 2.1756 3.3963 40 1 5.0835 -0.4121 2.7234 41 1 3.3612 -2.3403 3.5052 42 1 1.3638 -1.1438 4.7075 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647443283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:55 Heat of formation + Delta-G solvation = 142.367933 kcal Electronic energy + Delta-G solvation = -26376.766659 eV Core-core repulsion = 22782.999024 eV Total energy + Delta-G solvation = -3593.767635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.69912 -42.30396 -37.54806 -36.99779 -32.97922 -32.81932 -32.57620 -31.23725 -30.36521 -29.35611 -27.61912 -25.64518 -25.06993 -23.30220 -22.53537 -21.57703 -20.93281 -20.37616 -20.08150 -17.71219 -17.13044 -16.77280 -16.41132 -15.86727 -15.62081 -15.19704 -14.66231 -14.18463 -14.08674 -13.94750 -13.58134 -13.41756 -12.82913 -12.67977 -12.61861 -12.60133 -12.55449 -12.24142 -11.99070 -11.89873 -11.73198 -11.33187 -11.20665 -11.04386 -10.83178 -10.81972 -10.64606 -10.25811 -10.04614 -9.79660 -9.70715 -9.58052 -8.77891 -8.49803 -8.30219 -6.25166 -4.27054 1.34404 1.77489 2.10566 2.61586 2.72064 3.14672 3.17809 3.26454 3.30364 4.01748 4.25536 4.37305 4.70869 4.78127 4.89695 5.00083 5.05525 5.11808 5.13307 5.17948 5.25425 5.40428 5.49771 5.58972 5.61553 5.74813 5.78520 5.84071 5.87703 5.91511 5.92861 6.03194 6.12934 6.18085 6.23345 6.28361 6.49977 6.54754 6.61723 7.12252 7.18016 7.31864 7.55810 8.32974 8.81096 8.84909 9.32956 10.86496 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.006036 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.141674 B = 4638.062780 C = 5238.648856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.153 3.847 4 H 0.124 0.876 5 C -0.163 4.163 6 N -0.355 5.355 7 N -0.096 5.096 8 N -0.047 5.047 9 N -0.361 5.361 10 C 0.431 3.569 11 N -0.456 5.456 12 C 0.177 3.823 13 C -0.522 4.522 14 H 0.088 0.912 15 C 0.080 3.920 16 N -0.888 5.888 17 Si 0.865 3.135 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.143 3.857 22 C 0.004 3.996 23 C -0.209 4.209 24 C -0.215 4.215 25 C -0.043 4.043 26 O -0.161 6.161 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 -14.475 -3.386 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.142 0.858 5 C -0.220 4.220 6 N -0.153 5.153 7 N -0.082 5.082 8 N -0.043 5.043 9 N -0.219 5.219 10 C 0.065 3.935 11 N -0.184 5.184 12 C 0.052 3.948 13 C -0.561 4.561 14 H 0.106 0.894 15 C -0.124 4.124 16 N -0.525 5.525 17 Si 0.692 3.308 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.187 1.187 21 C 0.016 3.984 22 C -0.047 4.047 23 C -0.229 4.229 24 C -0.235 4.235 25 C -0.112 4.112 26 O -0.056 6.056 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.565 -14.619 -3.976 15.564 hybrid contribution 0.632 0.641 -0.253 0.935 sum -2.933 -13.978 -4.228 14.895 Atomic orbital electron populations 1.21773 0.94011 1.02271 1.02609 1.21817 0.96908 0.94389 1.03443 1.21726 0.72559 0.98787 1.01836 0.85849 1.22194 1.02724 1.01360 0.95765 1.51726 1.09220 1.35087 1.19254 1.82398 0.93128 1.18174 1.14538 1.77850 1.14915 1.08075 1.03494 1.74907 1.16497 1.17943 1.12511 1.23416 0.85649 0.93033 0.91407 1.59218 1.57916 1.04230 0.97045 1.20389 0.96895 0.79103 0.98364 1.20830 1.17491 0.90757 1.26973 0.89367 1.24768 0.95694 0.96917 0.94989 1.69853 1.38041 1.05795 1.38823 0.87007 0.83098 0.79827 0.80907 1.20018 1.20631 1.18734 1.20631 0.97164 0.89072 0.91532 1.22470 0.85984 0.96922 0.99349 1.21601 1.02566 0.91902 1.06842 1.21737 0.96158 1.00287 1.05292 1.23988 1.01583 0.80664 1.04959 1.84095 1.35276 1.25549 1.60649 0.91970 0.92000 0.92093 0.90748 0.91234 0.91511 0.91389 0.89802 0.96308 0.95403 0.92218 0.85676 0.89839 0.84299 0.83929 0.78386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.98 16 2 C -0.13 -1.46 5.66 -26.73 -0.15 -1.62 16 3 C 0.15 2.13 3.24 -67.93 -0.22 1.91 16 4 H 0.12 1.87 7.84 -51.93 -0.41 1.46 16 5 C -0.16 -1.97 9.27 37.16 0.34 -1.63 16 6 N -0.36 -6.03 3.33 -55.36 -0.18 -6.21 16 7 N -0.10 -1.71 13.84 60.35 0.84 -0.87 16 8 N -0.05 -0.92 13.38 60.35 0.81 -0.11 16 9 N -0.36 -7.18 11.92 30.09 0.36 -6.82 16 10 C 0.43 8.17 5.33 -320.43 -1.71 6.46 16 11 N -0.46 -8.94 4.20 -177.60 -0.75 -9.69 16 12 C 0.18 3.97 3.77 -4.98 -0.02 3.95 16 13 C -0.52 -13.42 9.12 -34.44 -0.31 -13.73 16 14 H 0.09 2.45 8.01 -52.49 -0.42 2.03 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 17 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 21 C 0.14 2.54 5.28 -4.98 -0.03 2.52 16 22 C 0.00 0.06 6.35 -35.63 -0.23 -0.16 16 23 C -0.21 -3.22 10.29 -39.70 -0.41 -3.63 16 24 C -0.22 -2.78 10.91 -39.70 -0.43 -3.21 16 25 C -0.04 -0.54 12.09 29.42 0.36 -0.18 16 26 O -0.16 -2.55 10.65 5.70 0.06 -2.49 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.80 6.56 -51.93 -0.34 0.46 16 35 H 0.02 0.44 7.06 -51.93 -0.37 0.07 16 36 H 0.03 0.65 7.34 -51.93 -0.38 0.27 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.13 2.31 7.40 -51.93 -0.38 1.93 16 39 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 40 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -29.50 355.95 -5.97 -35.46 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.02 Total: 2.55 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.54 Total: -8.25 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 1.84 Total: -48.20 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: 0.06 Total: -2.49 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.50 -5.97 -35.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647443283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.830 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds