Wall clock time and date at job start Tue Mar 31 2020 09:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.47046 * 2 1 4 4 C 1.52990 * 109.47289 * 120.00310 * 2 1 3 5 5 S 1.81397 * 109.47264 * 189.35630 * 4 2 1 6 6 C 1.76202 * 103.00089 * 179.97438 * 5 4 2 7 7 C 1.38977 * 120.07887 * 359.73025 * 6 5 4 8 8 C 1.38088 * 119.91404 * 179.76213 * 7 6 5 9 9 C 1.38296 * 120.08405 * 0.48851 * 8 7 6 10 10 C 1.38304 * 120.15873 * 359.76249 * 9 8 7 11 11 C 1.38075 * 120.08479 * 0.02562 * 10 9 8 12 12 N 1.46897 * 109.46972 * 240.00267 * 2 1 3 13 13 C 1.46900 * 111.00062 * 178.92878 * 12 2 1 14 14 C 1.46902 * 111.00146 * 54.97544 * 12 2 1 15 15 C 1.52996 * 109.47353 * 197.33077 * 14 12 2 16 16 C 1.50699 * 115.56571 * 268.58235 * 15 14 12 17 17 H 1.08004 * 120.00006 * 140.61830 * 16 15 14 18 18 C 1.37882 * 119.99991 * 320.62853 * 16 15 14 19 19 N 1.31515 * 119.99969 * 347.45580 * 18 16 15 20 20 Si 1.86797 * 120.00164 * 167.45602 * 18 16 15 21 21 H 1.48503 * 109.47056 * 59.99860 * 20 18 16 22 22 H 1.48495 * 109.47243 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47342 * 299.99900 * 20 18 16 24 24 C 1.53005 * 117.49705 * 54.27452 * 15 14 12 25 25 C 1.53004 * 60.02995 * 107.47863 * 24 15 14 26 26 H 1.08997 * 109.46648 * 300.00073 * 1 2 3 27 27 H 1.09003 * 109.46872 * 59.99346 * 1 2 3 28 28 H 1.08994 * 109.46760 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47007 * 309.35487 * 4 2 1 30 30 H 1.09004 * 109.47260 * 69.35439 * 4 2 1 31 31 H 1.07988 * 120.04148 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.95304 * 180.22832 * 8 7 6 33 33 H 1.07996 * 119.92277 * 179.74423 * 9 8 7 34 34 H 1.08008 * 119.95703 * 179.97438 * 10 9 8 35 35 H 1.07997 * 120.04422 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47559 * 315.02650 * 13 12 2 37 37 H 1.09002 * 109.47164 * 75.02840 * 13 12 2 38 38 H 1.09000 * 109.47168 * 195.02950 * 13 12 2 39 39 H 1.09006 * 109.46930 * 77.33227 * 14 12 2 40 40 H 1.09003 * 109.47342 * 317.33495 * 14 12 2 41 41 H 0.96992 * 119.99872 * 185.01663 * 19 18 16 42 42 H 1.09006 * 117.49400 * 214.97831 * 24 15 14 43 43 H 1.08994 * 117.49600 * 359.97438 * 24 15 14 44 44 H 1.08999 * 117.50013 * 107.50506 * 25 24 15 45 45 H 1.09001 * 117.49679 * 252.52067 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 16 3.8326 -0.4843 1.3947 6 6 4.2314 -1.3697 2.8650 7 6 3.2313 -2.0158 3.5819 8 6 3.5484 -2.7128 4.7310 9 6 4.8576 -2.7599 5.1742 10 6 5.8546 -2.1138 4.4662 11 6 5.5458 -1.4186 3.3139 12 7 2.0197 -0.6924 -1.1994 13 6 3.4879 -0.6899 -1.2463 14 6 1.4531 -0.0991 -2.4180 15 6 1.6201 -1.0741 -3.5852 16 6 2.8821 -0.9118 -4.3926 17 1 3.4109 -1.7834 -4.7493 18 6 3.3620 0.3494 -4.6759 19 7 2.6054 1.4039 -4.4632 20 14 5.0866 0.5604 -5.3618 21 1 5.1977 -0.1642 -6.6533 22 1 5.3596 2.0037 -5.5795 23 1 6.0733 0.0092 -4.3986 24 6 1.0742 -2.4920 -3.4050 25 6 0.3551 -1.5080 -4.3301 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.5468 -0.3130 2.1312 30 1 1.8196 -1.7858 1.1695 31 1 2.2082 -1.9756 3.2389 32 1 2.7723 -3.2181 5.2866 33 1 5.1020 -3.3024 6.0755 34 1 6.8759 -2.1525 4.8155 35 1 6.3248 -0.9139 2.7617 36 1 3.8577 0.3049 -0.9980 37 1 3.8757 -1.4116 -0.5273 38 1 3.8199 -0.9611 -2.2485 39 1 1.9733 0.8316 -2.6448 40 1 0.3935 0.1051 -2.2640 41 1 2.9140 2.2839 -4.7297 42 1 1.6280 -3.3074 -3.8704 43 1 0.5964 -2.7303 -2.4547 44 1 0.4358 -1.6761 -5.4040 45 1 -0.5955 -1.0987 -3.9882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654136186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:11 Heat of formation + Delta-G solvation = 63.246444 kcal Electronic energy + Delta-G solvation = -22992.985320 eV Core-core repulsion = 19909.787183 eV Total energy + Delta-G solvation = -3083.198137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.90189 -38.09548 -35.68625 -32.20472 -31.59807 -30.96181 -30.82673 -28.14817 -25.78912 -25.41521 -23.37282 -22.74358 -22.46448 -21.02063 -19.82404 -18.67501 -17.66537 -16.32708 -16.19217 -15.74259 -15.23382 -14.81647 -14.74022 -14.13705 -13.97822 -13.66491 -13.45833 -13.18693 -13.10680 -12.65345 -12.51062 -12.43162 -11.90309 -11.66896 -11.44621 -11.24764 -11.13470 -11.11150 -10.91026 -10.78028 -10.63507 -10.43955 -10.16995 -10.11070 -9.81306 -9.45770 -9.23710 -9.04938 -8.79285 -8.60134 -8.09528 -7.35225 -6.96464 -6.03403 -4.05909 1.19576 1.30868 1.69020 2.60104 3.27319 3.33164 3.36771 3.66933 4.36139 4.56550 4.78805 4.86105 4.95049 5.02608 5.05613 5.29615 5.32885 5.40250 5.47720 5.66320 5.69188 5.72687 5.80594 5.91524 5.96257 6.14919 6.25980 6.29015 6.31357 6.39634 6.42425 6.45379 6.58421 6.61622 6.69968 6.85194 6.90122 7.00047 7.07150 7.22708 7.28731 7.49765 7.58789 7.91096 8.14635 8.17271 8.51867 8.89895 9.50133 10.95769 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.004013 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.757959 B = 6975.792069 C = 7873.425815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.042 0.958 4 C -0.096 4.096 5 S -0.085 6.085 6 C -0.095 4.095 7 C -0.138 4.138 8 C -0.102 4.102 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.107 4.107 12 N -0.528 5.528 13 C 0.008 3.992 14 C 0.075 3.925 15 C 0.063 3.937 16 C -0.483 4.483 17 H 0.059 0.941 18 C 0.070 3.930 19 N -0.878 5.878 20 Si 0.884 3.116 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.190 4.190 25 C -0.206 4.206 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -3.745 16.728 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 H 0.059 0.941 4 C -0.245 4.245 5 S 0.164 5.836 6 C -0.207 4.207 7 C -0.162 4.162 8 C -0.121 4.121 9 C -0.159 4.159 10 C -0.123 4.123 11 C -0.131 4.131 12 N -0.253 5.253 13 C -0.141 4.141 14 C -0.051 4.051 15 C 0.062 3.938 16 C -0.520 4.520 17 H 0.077 0.923 18 C -0.132 4.132 19 N -0.516 5.516 20 Si 0.711 3.289 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.227 4.227 25 C -0.244 4.244 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.166 -3.316 15.966 16.348 hybrid contribution 0.293 0.238 0.426 0.570 sum 1.459 -3.078 16.392 16.742 Atomic orbital electron populations 1.21906 0.93751 1.02578 1.01790 1.21371 0.95534 0.95228 0.89655 0.94050 1.23865 0.93338 1.05647 1.01601 1.86543 1.09591 1.66284 1.21197 1.22442 0.96754 1.01831 0.99703 1.21198 0.98540 0.99979 0.96521 1.21039 0.96592 0.98422 0.96089 1.21088 0.93172 1.01192 1.00446 1.21065 0.99219 0.97058 0.94952 1.20773 0.94662 1.00645 0.97029 1.62141 1.08085 1.53665 1.01372 1.22905 0.87267 0.99246 1.04703 1.22062 0.97411 0.99372 0.86255 1.18813 0.91657 0.89891 0.93410 1.20582 1.06808 0.91981 1.32616 0.92301 1.24946 0.97118 0.95922 0.95209 1.69818 1.36424 0.99056 1.46296 0.86778 0.85350 0.77091 0.79664 1.20208 1.21254 1.19858 1.22648 1.05970 0.94908 0.99210 1.22989 0.97416 1.07055 0.96959 0.92959 0.91095 0.91821 0.89735 0.88518 0.85995 0.86140 0.86260 0.85939 0.85752 0.96746 0.90760 0.88091 0.89041 0.93729 0.92815 0.91487 0.90991 0.90912 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.86 37.16 0.33 -1.68 16 2 C 0.09 1.50 2.29 -67.72 -0.15 1.35 16 3 H 0.04 0.73 8.06 -51.92 -0.42 0.31 16 4 C -0.10 -1.33 3.83 37.15 0.14 -1.19 16 5 S -0.08 -1.26 16.96 -107.50 -1.82 -3.09 16 6 C -0.09 -1.29 6.11 -39.03 -0.24 -1.53 16 7 C -0.14 -1.70 9.36 -39.36 -0.37 -2.06 16 8 C -0.10 -1.08 10.04 -39.62 -0.40 -1.48 16 9 C -0.14 -1.39 10.04 -39.54 -0.40 -1.79 16 10 C -0.10 -1.10 10.04 -39.62 -0.40 -1.49 16 11 C -0.11 -1.34 9.79 -39.37 -0.39 -1.73 16 12 N -0.53 -10.31 4.34 -234.88 -1.02 -11.33 16 13 C 0.01 0.17 7.88 60.06 0.47 0.64 16 14 C 0.08 1.69 4.58 -3.82 -0.02 1.67 16 15 C 0.06 1.52 1.62 -155.62 -0.25 1.27 16 16 C -0.48 -12.71 7.05 -34.44 -0.24 -12.95 16 17 H 0.06 1.57 7.85 -52.48 -0.41 1.16 16 18 C 0.07 1.85 5.10 -17.82 -0.09 1.75 16 19 N -0.88 -23.74 10.93 55.43 0.61 -23.13 16 20 Si 0.88 20.55 29.56 -169.99 -5.02 15.53 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 C -0.19 -4.17 9.71 -26.73 -0.26 -4.43 16 25 C -0.21 -4.71 9.88 -26.69 -0.26 -4.97 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.11 5.99 -51.93 -0.31 0.80 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.00 7.71 -51.92 -0.40 0.60 16 30 H 0.10 1.35 7.76 -51.92 -0.40 0.95 16 31 H 0.12 1.37 5.88 -52.49 -0.31 1.06 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.01 0.30 7.18 -51.93 -0.37 -0.08 16 37 H 0.07 1.40 5.56 -31.69 -0.18 1.22 16 38 H 0.10 2.36 5.51 -51.93 -0.29 2.07 16 39 H 0.09 2.34 5.18 -51.93 -0.27 2.07 16 40 H 0.04 0.97 5.11 -51.93 -0.27 0.70 16 41 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 45 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -27.10 360.36 -11.33 -38.43 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.98 Total: 6.79 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.52 Total: -28.62 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.41 Total: -34.47 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.82 Total: -3.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.10 -11.33 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654136186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.677 kcal (2) G-P(sol) polarization free energy of solvation -27.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds