Wall clock time and date at job start Tue Mar 31 2020 09:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.47046 * 2 1 4 4 C 1.52990 * 109.47289 * 120.00310 * 2 1 3 5 5 S 1.81397 * 109.47264 * 189.35630 * 4 2 1 6 6 C 1.76202 * 103.00089 * 179.97438 * 5 4 2 7 7 C 1.38977 * 120.07887 * 359.73025 * 6 5 4 8 8 C 1.38088 * 119.91404 * 179.76213 * 7 6 5 9 9 C 1.38296 * 120.08405 * 0.48851 * 8 7 6 10 10 C 1.38304 * 120.15873 * 359.76249 * 9 8 7 11 11 C 1.38075 * 120.08479 * 0.02562 * 10 9 8 12 12 N 1.46897 * 109.46972 * 240.00267 * 2 1 3 13 13 C 1.46900 * 111.00062 * 178.92878 * 12 2 1 14 14 C 1.46902 * 111.00146 * 54.97544 * 12 2 1 15 15 C 1.52996 * 109.47353 * 197.33077 * 14 12 2 16 16 C 1.50699 * 115.56571 * 268.58235 * 15 14 12 17 17 H 1.08004 * 120.00006 * 140.61830 * 16 15 14 18 18 C 1.37882 * 119.99991 * 320.62853 * 16 15 14 19 19 N 1.31515 * 119.99969 * 347.45580 * 18 16 15 20 20 Si 1.86797 * 120.00164 * 167.45602 * 18 16 15 21 21 H 1.48503 * 109.47056 * 59.99860 * 20 18 16 22 22 H 1.48495 * 109.47243 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47342 * 299.99900 * 20 18 16 24 24 C 1.53005 * 117.49705 * 54.27452 * 15 14 12 25 25 C 1.53004 * 60.02995 * 107.47863 * 24 15 14 26 26 H 1.08997 * 109.46648 * 300.00073 * 1 2 3 27 27 H 1.09003 * 109.46872 * 59.99346 * 1 2 3 28 28 H 1.08994 * 109.46760 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47007 * 309.35487 * 4 2 1 30 30 H 1.09004 * 109.47260 * 69.35439 * 4 2 1 31 31 H 1.07988 * 120.04148 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.95304 * 180.22832 * 8 7 6 33 33 H 1.07996 * 119.92277 * 179.74423 * 9 8 7 34 34 H 1.08008 * 119.95703 * 179.97438 * 10 9 8 35 35 H 1.07997 * 120.04422 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47559 * 315.02650 * 13 12 2 37 37 H 1.09002 * 109.47164 * 75.02840 * 13 12 2 38 38 H 1.09000 * 109.47168 * 195.02950 * 13 12 2 39 39 H 1.09006 * 109.46930 * 77.33227 * 14 12 2 40 40 H 1.09003 * 109.47342 * 317.33495 * 14 12 2 41 41 H 0.96992 * 119.99872 * 185.01663 * 19 18 16 42 42 H 1.09006 * 117.49400 * 214.97831 * 24 15 14 43 43 H 1.08994 * 117.49600 * 359.97438 * 24 15 14 44 44 H 1.08999 * 117.50013 * 107.50506 * 25 24 15 45 45 H 1.09001 * 117.49679 * 252.52067 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 16 3.8326 -0.4843 1.3947 6 6 4.2314 -1.3697 2.8650 7 6 3.2313 -2.0158 3.5819 8 6 3.5484 -2.7128 4.7310 9 6 4.8576 -2.7599 5.1742 10 6 5.8546 -2.1138 4.4662 11 6 5.5458 -1.4186 3.3139 12 7 2.0197 -0.6924 -1.1994 13 6 3.4879 -0.6899 -1.2463 14 6 1.4531 -0.0991 -2.4180 15 6 1.6201 -1.0741 -3.5852 16 6 2.8821 -0.9118 -4.3926 17 1 3.4109 -1.7834 -4.7493 18 6 3.3620 0.3494 -4.6759 19 7 2.6054 1.4039 -4.4632 20 14 5.0866 0.5604 -5.3618 21 1 5.1977 -0.1642 -6.6533 22 1 5.3596 2.0037 -5.5795 23 1 6.0733 0.0092 -4.3986 24 6 1.0742 -2.4920 -3.4050 25 6 0.3551 -1.5080 -4.3301 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.5468 -0.3130 2.1312 30 1 1.8196 -1.7858 1.1695 31 1 2.2082 -1.9756 3.2389 32 1 2.7723 -3.2181 5.2866 33 1 5.1020 -3.3024 6.0755 34 1 6.8759 -2.1525 4.8155 35 1 6.3248 -0.9139 2.7617 36 1 3.8577 0.3049 -0.9980 37 1 3.8757 -1.4116 -0.5273 38 1 3.8199 -0.9611 -2.2485 39 1 1.9733 0.8316 -2.6448 40 1 0.3935 0.1051 -2.2640 41 1 2.9140 2.2839 -4.7297 42 1 1.6280 -3.3074 -3.8704 43 1 0.5964 -2.7303 -2.4547 44 1 0.4358 -1.6761 -5.4040 45 1 -0.5955 -1.0987 -3.9882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654136186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:11 Heat of formation + Delta-G solvation = 51.212766 kcal Electronic energy + Delta-G solvation = -22993.507139 eV Core-core repulsion = 19909.787183 eV Total energy + Delta-G solvation = -3083.719956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.75950 -39.69112 -37.35557 -34.19517 -32.88255 -31.84762 -31.81155 -29.49960 -27.71894 -26.96216 -24.89226 -23.64168 -23.38759 -22.81982 -21.27273 -20.46675 -18.63433 -18.06729 -17.33231 -17.13142 -16.69441 -16.27910 -15.75448 -15.66965 -15.45619 -15.01490 -14.52871 -14.32359 -14.23596 -14.11254 -14.09287 -13.57245 -13.33445 -13.23146 -12.96572 -12.83292 -12.65396 -12.47308 -12.33115 -12.24191 -12.11190 -11.94893 -11.91314 -11.64253 -11.13960 -10.89922 -10.69029 -10.51241 -10.44480 -9.96446 -9.90236 -8.98151 -8.14835 -8.02546 -6.11384 0.32051 0.45400 0.61634 1.38650 1.42289 1.47792 1.54688 2.41126 2.81740 3.00800 3.16058 3.75093 3.84550 3.96755 4.05996 4.15594 4.17527 4.26977 4.41461 4.47437 4.54506 4.59504 4.62263 4.65634 4.79775 4.82528 4.84588 4.87557 4.99490 5.06495 5.09902 5.10321 5.15218 5.30007 5.35793 5.38844 5.45331 5.48788 5.51682 5.59525 5.62360 5.68916 6.04006 6.04426 6.41294 6.53198 6.54339 6.89381 7.45996 8.93018 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.004013 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.757959 B = 6975.792069 C = 7873.425815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.025 0.975 4 C -0.078 4.078 5 S -0.138 6.138 6 C -0.109 4.109 7 C -0.149 4.149 8 C -0.105 4.105 9 C -0.134 4.134 10 C -0.106 4.106 11 C -0.125 4.125 12 N -0.524 5.524 13 C 0.023 3.977 14 C 0.088 3.912 15 C 0.037 3.963 16 C -0.496 4.496 17 H 0.046 0.954 18 C 0.035 3.965 19 N -0.898 5.898 20 Si 0.932 3.068 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.169 4.169 25 C -0.206 4.206 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.121 0.879 36 H 0.002 0.998 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -5.033 19.355 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.043 0.957 4 C -0.226 4.226 5 S 0.109 5.891 6 C -0.221 4.221 7 C -0.173 4.173 8 C -0.125 4.125 9 C -0.154 4.154 10 C -0.126 4.126 11 C -0.149 4.149 12 N -0.249 5.249 13 C -0.127 4.127 14 C -0.039 4.039 15 C 0.036 3.964 16 C -0.534 4.534 17 H 0.064 0.936 18 C -0.165 4.165 19 N -0.537 5.537 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.206 4.206 25 C -0.245 4.245 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.139 0.861 36 H 0.021 0.979 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.792 -4.621 18.603 19.185 hybrid contribution 0.438 0.579 -0.264 0.773 sum 1.231 -4.042 18.339 18.820 Atomic orbital electron populations 1.21862 0.91827 1.03198 1.02489 1.21473 0.97013 0.94345 0.89171 0.95720 1.23727 0.92271 1.05465 1.01129 1.86624 1.11243 1.67328 1.23900 1.22346 0.97664 1.02831 0.99238 1.21411 0.98638 1.00103 0.97104 1.21413 0.97736 0.97803 0.95510 1.21524 0.92734 1.00193 1.00993 1.21400 1.00841 0.96229 0.94081 1.20959 0.94397 1.01471 0.98076 1.62147 1.07356 1.53766 1.01603 1.22729 0.87999 0.98959 1.03009 1.21759 0.97444 0.97595 0.87103 1.18936 0.91391 0.91797 0.94263 1.20755 1.07930 0.91693 1.32999 0.93593 1.25449 0.99646 0.95702 0.95696 1.69939 1.37531 0.99131 1.47086 0.86007 0.82084 0.76955 0.79100 1.19896 1.21025 1.19714 1.22596 1.04821 0.93739 0.99458 1.22973 0.97565 1.07402 0.96522 0.89887 0.92777 0.91144 0.87183 0.88271 0.85236 0.83475 0.83221 0.83504 0.86075 0.97916 0.89236 0.91443 0.92333 0.92992 0.93056 0.91694 0.89396 0.92002 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.86 71.98 0.64 -2.95 16 2 C 0.09 2.86 2.29 44.91 0.10 2.96 16 3 H 0.02 0.88 8.06 -2.38 -0.02 0.86 16 4 C -0.08 -2.04 3.83 71.98 0.28 -1.76 16 5 S -0.14 -4.13 16.96 -56.49 -0.96 -5.08 16 6 C -0.11 -2.85 6.11 22.63 0.14 -2.72 16 7 C -0.15 -3.33 9.36 22.41 0.21 -3.12 16 8 C -0.11 -1.89 10.04 22.25 0.22 -1.67 16 9 C -0.13 -2.22 10.04 22.30 0.22 -2.00 16 10 C -0.11 -1.99 10.04 22.25 0.22 -1.77 16 11 C -0.13 -3.02 9.79 22.41 0.22 -2.80 16 12 N -0.52 -20.53 4.34 -897.04 -3.90 -24.42 16 13 C 0.02 0.96 7.88 127.69 1.01 1.96 16 14 C 0.09 4.01 4.58 86.30 0.40 4.41 16 15 C 0.04 1.80 1.62 -52.90 -0.09 1.71 16 16 C -0.50 -26.78 7.05 25.60 0.18 -26.60 16 17 H 0.05 2.52 7.85 -2.91 -0.02 2.50 16 18 C 0.04 1.89 5.10 84.66 0.43 2.32 16 19 N -0.90 -49.84 10.93 21.45 0.23 -49.60 16 20 Si 0.93 43.07 29.56 68.60 2.03 45.10 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.17 -7.29 9.71 30.60 0.30 -7.00 16 25 C -0.21 -9.39 9.88 30.62 0.30 -9.08 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.63 5.99 -2.39 -0.01 1.61 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.11 2.32 7.71 -2.39 -0.02 2.31 16 30 H 0.10 2.57 7.76 -2.39 -0.02 2.56 16 31 H 0.13 2.59 5.88 -2.92 -0.02 2.57 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.00 0.11 7.18 -2.39 -0.02 0.09 16 37 H 0.09 3.44 5.56 -15.26 -0.08 3.35 16 38 H 0.07 3.26 5.51 -2.39 -0.01 3.25 16 39 H 0.06 3.10 5.18 -2.38 -0.01 3.09 16 40 H 0.05 2.26 5.11 -2.39 -0.01 2.24 16 41 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 42 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.07 3.12 8.03 -2.39 -0.02 3.10 16 Total: -1.00 -59.44 360.36 3.08 -56.36 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.89 Total: 25.74 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 4.78 Total: -48.09 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -3.66 Total: -74.03 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -0.96 Total: -5.08 kcal Total: -59.44 3.08 -56.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654136186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.576 kcal (2) G-P(sol) polarization free energy of solvation -59.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds