Wall clock time and date at job start Tue Mar 31 2020 09:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47027 * 2 1 4 4 C 1.53001 * 109.47110 * 240.00141 * 2 1 3 5 5 S 1.81398 * 109.47360 * 179.21672 * 4 2 1 6 6 C 1.76194 * 103.00257 * 180.02562 * 5 4 2 7 7 C 1.38973 * 120.08092 * 359.72857 * 6 5 4 8 8 C 1.38084 * 119.92195 * 179.76442 * 7 6 5 9 9 C 1.38302 * 120.07804 * 0.48725 * 8 7 6 10 10 C 1.38304 * 120.15905 * 359.76255 * 9 8 7 11 11 C 1.38083 * 120.08050 * 0.02562 * 10 9 8 12 12 N 1.46896 * 109.46830 * 120.00379 * 2 1 3 13 13 C 1.46896 * 111.00267 * 289.68190 * 12 2 1 14 14 C 1.46907 * 111.00171 * 53.63681 * 12 2 1 15 15 C 1.53005 * 109.47131 * 170.13870 * 14 12 2 16 16 C 1.50701 * 115.54457 * 280.95116 * 15 14 12 17 17 H 1.08005 * 119.99530 * 146.46357 * 16 15 14 18 18 C 1.37872 * 120.00458 * 326.47117 * 16 15 14 19 19 N 1.31509 * 119.99920 * 341.37425 * 18 16 15 20 20 Si 1.86800 * 120.00203 * 161.37866 * 18 16 15 21 21 H 1.48497 * 109.47504 * 89.99624 * 20 18 16 22 22 H 1.48501 * 109.47040 * 209.99778 * 20 18 16 23 23 H 1.48505 * 109.47060 * 329.99417 * 20 18 16 24 24 C 1.52997 * 117.49749 * 135.25048 * 15 14 12 25 25 C 1.52999 * 117.50166 * 66.62400 * 15 14 12 26 26 H 1.09000 * 109.46839 * 59.99997 * 1 2 3 27 27 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47247 * 299.99658 * 1 2 3 29 29 H 1.09000 * 109.47041 * 299.21925 * 4 2 1 30 30 H 1.09006 * 109.46925 * 59.21428 * 4 2 1 31 31 H 1.08007 * 120.04029 * 359.97438 * 7 6 5 32 32 H 1.07993 * 119.96323 * 180.23198 * 8 7 6 33 33 H 1.07993 * 119.92217 * 179.75012 * 9 8 7 34 34 H 1.08004 * 119.95911 * 179.97438 * 10 9 8 35 35 H 1.08008 * 120.03825 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47460 * 192.93323 * 13 12 2 37 37 H 1.08997 * 109.47506 * 72.92954 * 13 12 2 38 38 H 1.09003 * 109.46888 * 312.93111 * 13 12 2 39 39 H 1.09003 * 109.46910 * 290.13192 * 14 12 2 40 40 H 1.08994 * 109.47376 * 50.13376 * 14 12 2 41 41 H 0.97005 * 120.00277 * 185.13712 * 19 18 16 42 42 H 1.08995 * 117.50297 * 359.97438 * 24 15 14 43 43 H 1.09001 * 117.49550 * 145.01808 * 24 15 14 44 44 H 1.08998 * 117.49793 * 214.98025 * 25 15 14 45 45 H 1.09002 * 117.49484 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 16 3.8539 -0.7010 -1.2611 6 6 4.2503 -1.5611 -2.7469 7 6 3.2354 -2.0553 -3.5576 8 6 3.5497 -2.7246 -4.7238 9 6 4.8727 -2.9121 -5.0803 10 6 5.8854 -2.4262 -4.2734 11 6 5.5785 -1.7522 -3.1079 12 7 2.0196 -0.6926 1.1994 13 6 1.7597 0.1004 2.4082 14 6 1.4285 -2.0327 1.3117 15 6 2.1377 -2.8117 2.4213 16 6 3.4732 -3.4025 2.0489 17 1 4.2569 -3.4744 2.7886 18 6 3.6946 -3.8511 0.7642 19 7 2.6761 -4.1094 -0.0267 20 14 5.4411 -4.0921 0.1469 21 1 5.8835 -5.4786 0.4417 22 1 5.4844 -3.8598 -1.3192 23 1 6.3439 -3.1292 0.8274 24 6 1.2649 -3.5988 3.4007 25 6 1.9606 -2.3149 3.8575 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6882 -1.7528 -1.2423 30 1 1.6652 -0.2155 -2.1392 31 1 2.2020 -1.9131 -3.2775 32 1 2.7615 -3.1056 -5.3561 33 1 5.1157 -3.4394 -5.9909 34 1 6.9175 -2.5749 -4.5547 35 1 6.3699 -1.3733 -2.4781 36 1 2.3251 -0.3136 3.2430 37 1 0.6951 0.0708 2.6403 38 1 2.0659 1.1327 2.2384 39 1 0.3687 -1.9435 1.5508 40 1 1.5442 -2.5614 0.3656 41 1 2.8286 -4.4952 -0.9036 42 1 0.1854 -3.5614 3.2550 43 1 1.6565 -4.5443 3.7761 44 1 2.8099 -2.4157 4.5332 45 1 1.3391 -1.4328 4.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654136187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:14 Heat of formation + Delta-G solvation = 70.498373 kcal Electronic energy + Delta-G solvation = -24061.727768 eV Core-core repulsion = 20978.844099 eV Total energy + Delta-G solvation = -3082.883670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.53884 -38.39758 -35.64716 -32.10951 -31.26580 -30.61217 -30.51312 -27.26779 -26.68626 -25.21575 -23.77308 -22.37402 -22.14484 -21.04799 -19.75926 -18.59834 -17.31945 -16.29587 -15.88065 -15.13785 -14.84273 -14.62584 -14.42001 -14.19665 -13.73118 -13.63118 -13.43590 -13.16181 -12.99437 -12.71345 -12.42947 -12.17671 -11.83782 -11.66613 -11.35863 -11.07073 -10.97981 -10.86286 -10.78833 -10.66442 -10.55466 -10.28790 -10.09341 -9.89781 -9.48465 -9.26169 -9.08939 -8.97951 -8.64897 -8.54505 -7.84495 -7.32082 -6.64082 -5.90634 -3.85663 1.57535 1.68286 2.12374 3.08526 3.43421 3.56636 3.58721 4.04254 4.57130 4.62142 5.05731 5.13565 5.19314 5.20934 5.34542 5.43178 5.56935 5.66197 5.68369 5.72995 5.81044 5.90129 5.94761 6.03351 6.05771 6.11424 6.18480 6.26567 6.29947 6.38229 6.52213 6.61792 6.63022 6.66335 6.70723 6.75122 6.76919 6.79918 7.01840 7.20567 7.21635 7.40378 7.71475 7.99640 8.12058 8.23201 8.63340 9.04233 9.72590 11.11117 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.006668 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.129887 B = 4198.375903 C = 5251.040414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 H 0.077 0.923 4 C -0.103 4.103 5 S -0.054 6.054 6 C -0.076 4.076 7 C -0.132 4.132 8 C -0.101 4.101 9 C -0.141 4.141 10 C -0.105 4.105 11 C -0.106 4.106 12 N -0.507 5.507 13 C 0.018 3.982 14 C 0.075 3.925 15 C 0.074 3.926 16 C -0.475 4.475 17 H 0.053 0.947 18 C 0.100 3.900 19 N -0.877 5.877 20 Si 0.870 3.130 21 H -0.294 1.294 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.211 4.211 25 C -0.220 4.220 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.046 0.954 39 H -0.007 1.007 40 H 0.139 0.861 41 H 0.258 0.742 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 7.164 -7.431 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.013 4.013 3 H 0.096 0.904 4 C -0.252 4.252 5 S 0.195 5.805 6 C -0.189 4.189 7 C -0.157 4.157 8 C -0.121 4.121 9 C -0.163 4.163 10 C -0.125 4.125 11 C -0.131 4.131 12 N -0.230 5.230 13 C -0.130 4.130 14 C -0.051 4.051 15 C 0.074 3.926 16 C -0.512 4.512 17 H 0.071 0.929 18 C -0.102 4.102 19 N -0.515 5.515 20 Si 0.698 3.302 21 H -0.221 1.221 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.250 4.250 25 C -0.258 4.258 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.030 0.970 38 H 0.065 0.935 39 H 0.011 0.989 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.264 7.684 -6.746 10.229 hybrid contribution -0.919 -0.830 -0.985 1.583 sum -1.184 6.854 -7.731 10.399 Atomic orbital electron populations 1.22446 0.97364 1.02763 1.01449 1.21378 0.92232 0.97301 0.90425 0.90442 1.23852 0.95158 1.05980 1.00162 1.85728 1.06114 1.66562 1.22117 1.22121 0.96385 1.01625 0.98802 1.21130 0.98323 1.00772 0.95476 1.20967 0.96370 0.98336 0.96451 1.20997 0.92978 1.02043 1.00249 1.20972 0.98978 0.97917 0.94596 1.20685 0.94539 1.00650 0.97220 1.62149 1.58019 1.02913 0.99893 1.22728 0.98090 0.96901 0.95254 1.22265 0.90862 0.86719 1.05267 1.18839 0.94728 0.94391 0.84685 1.20324 0.95825 1.39747 0.95286 0.92850 1.24567 0.96018 0.93649 0.96000 1.69652 1.29601 1.41991 1.10251 0.86929 0.86320 0.77316 0.79611 1.22147 1.19393 1.19736 1.23038 0.96459 0.94654 1.10827 1.23120 1.02620 0.96664 1.03376 0.92796 0.91620 0.92468 0.87659 0.90674 0.86134 0.86370 0.86547 0.86284 0.86186 0.89529 0.97023 0.93525 0.98868 0.84357 0.93200 0.92339 0.90691 0.91004 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.46 37.16 0.31 -2.30 16 2 C 0.10 1.61 2.35 -67.71 -0.16 1.46 16 3 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 4 C -0.10 -1.76 3.67 37.16 0.14 -1.63 16 5 S -0.05 -1.02 21.53 -107.50 -2.31 -3.34 16 6 C -0.08 -1.39 6.11 -39.04 -0.24 -1.63 16 7 C -0.13 -2.24 9.36 -39.37 -0.37 -2.61 16 8 C -0.10 -1.51 10.04 -39.61 -0.40 -1.91 16 9 C -0.14 -2.02 10.04 -39.53 -0.40 -2.41 16 10 C -0.10 -1.59 10.04 -39.61 -0.40 -1.99 16 11 C -0.11 -1.86 9.21 -39.37 -0.36 -2.23 16 12 N -0.51 -9.95 4.28 -234.89 -1.00 -10.95 16 13 C 0.02 0.32 7.67 60.06 0.46 0.78 16 14 C 0.08 1.66 3.66 -3.82 -0.01 1.65 16 15 C 0.07 1.80 1.89 -155.66 -0.29 1.51 16 16 C -0.48 -12.85 9.02 -34.44 -0.31 -13.16 16 17 H 0.05 1.49 7.88 -52.48 -0.41 1.08 16 18 C 0.10 2.65 5.12 -17.82 -0.09 2.56 16 19 N -0.88 -22.95 10.80 55.43 0.60 -22.35 16 20 Si 0.87 21.55 29.58 -169.99 -5.03 16.52 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.27 -6.54 6.51 56.52 0.37 -6.17 16 23 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 24 C -0.21 -4.85 9.88 -26.73 -0.26 -5.11 16 25 C -0.22 -4.77 7.92 -26.73 -0.21 -4.98 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 28 H 0.06 0.80 7.00 -51.93 -0.36 0.44 16 29 H 0.11 2.06 5.94 -51.92 -0.31 1.75 16 30 H 0.07 1.09 7.76 -51.92 -0.40 0.69 16 31 H 0.12 1.94 5.88 -52.48 -0.31 1.63 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 36 H 0.09 1.63 5.12 -51.93 -0.27 1.37 16 37 H 0.01 0.19 6.91 -51.93 -0.36 -0.17 16 38 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 39 H -0.01 -0.15 6.54 -51.93 -0.34 -0.49 16 40 H 0.14 3.32 3.10 -51.93 -0.16 3.16 16 41 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 42 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 43 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 45 H 0.07 1.42 5.76 -51.93 -0.30 1.12 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -27.65 358.62 -11.87 -39.52 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.93 Total: 7.21 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -2.60 Total: -32.01 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: -0.41 Total: -33.31 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.31 Total: -3.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.65 -11.87 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654136187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.016 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds