Wall clock time and date at job start Tue Mar 31 2020 09:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47027 * 2 1 4 4 C 1.53001 * 109.47110 * 240.00141 * 2 1 3 5 5 S 1.81398 * 109.47360 * 179.21672 * 4 2 1 6 6 C 1.76194 * 103.00257 * 180.02562 * 5 4 2 7 7 C 1.38973 * 120.08092 * 359.72857 * 6 5 4 8 8 C 1.38084 * 119.92195 * 179.76442 * 7 6 5 9 9 C 1.38302 * 120.07804 * 0.48725 * 8 7 6 10 10 C 1.38304 * 120.15905 * 359.76255 * 9 8 7 11 11 C 1.38083 * 120.08050 * 0.02562 * 10 9 8 12 12 N 1.46896 * 109.46830 * 120.00379 * 2 1 3 13 13 C 1.46896 * 111.00267 * 289.68190 * 12 2 1 14 14 C 1.46907 * 111.00171 * 53.63681 * 12 2 1 15 15 C 1.53005 * 109.47131 * 170.13870 * 14 12 2 16 16 C 1.50701 * 115.54457 * 280.95116 * 15 14 12 17 17 H 1.08005 * 119.99530 * 146.46357 * 16 15 14 18 18 C 1.37872 * 120.00458 * 326.47117 * 16 15 14 19 19 N 1.31509 * 119.99920 * 341.37425 * 18 16 15 20 20 Si 1.86800 * 120.00203 * 161.37866 * 18 16 15 21 21 H 1.48497 * 109.47504 * 89.99624 * 20 18 16 22 22 H 1.48501 * 109.47040 * 209.99778 * 20 18 16 23 23 H 1.48505 * 109.47060 * 329.99417 * 20 18 16 24 24 C 1.52997 * 117.49749 * 135.25048 * 15 14 12 25 25 C 1.52999 * 117.50166 * 66.62400 * 15 14 12 26 26 H 1.09000 * 109.46839 * 59.99997 * 1 2 3 27 27 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47247 * 299.99658 * 1 2 3 29 29 H 1.09000 * 109.47041 * 299.21925 * 4 2 1 30 30 H 1.09006 * 109.46925 * 59.21428 * 4 2 1 31 31 H 1.08007 * 120.04029 * 359.97438 * 7 6 5 32 32 H 1.07993 * 119.96323 * 180.23198 * 8 7 6 33 33 H 1.07993 * 119.92217 * 179.75012 * 9 8 7 34 34 H 1.08004 * 119.95911 * 179.97438 * 10 9 8 35 35 H 1.08008 * 120.03825 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47460 * 192.93323 * 13 12 2 37 37 H 1.08997 * 109.47506 * 72.92954 * 13 12 2 38 38 H 1.09003 * 109.46888 * 312.93111 * 13 12 2 39 39 H 1.09003 * 109.46910 * 290.13192 * 14 12 2 40 40 H 1.08994 * 109.47376 * 50.13376 * 14 12 2 41 41 H 0.97005 * 120.00277 * 185.13712 * 19 18 16 42 42 H 1.08995 * 117.50297 * 359.97438 * 24 15 14 43 43 H 1.09001 * 117.49550 * 145.01808 * 24 15 14 44 44 H 1.08998 * 117.49793 * 214.98025 * 25 15 14 45 45 H 1.09002 * 117.49484 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 16 3.8539 -0.7010 -1.2611 6 6 4.2503 -1.5611 -2.7469 7 6 3.2354 -2.0553 -3.5576 8 6 3.5497 -2.7246 -4.7238 9 6 4.8727 -2.9121 -5.0803 10 6 5.8854 -2.4262 -4.2734 11 6 5.5785 -1.7522 -3.1079 12 7 2.0196 -0.6926 1.1994 13 6 1.7597 0.1004 2.4082 14 6 1.4285 -2.0327 1.3117 15 6 2.1377 -2.8117 2.4213 16 6 3.4732 -3.4025 2.0489 17 1 4.2569 -3.4744 2.7886 18 6 3.6946 -3.8511 0.7642 19 7 2.6761 -4.1094 -0.0267 20 14 5.4411 -4.0921 0.1469 21 1 5.8835 -5.4786 0.4417 22 1 5.4844 -3.8598 -1.3192 23 1 6.3439 -3.1292 0.8274 24 6 1.2649 -3.5988 3.4007 25 6 1.9606 -2.3149 3.8575 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6882 -1.7528 -1.2423 30 1 1.6652 -0.2155 -2.1392 31 1 2.2020 -1.9131 -3.2775 32 1 2.7615 -3.1056 -5.3561 33 1 5.1157 -3.4394 -5.9909 34 1 6.9175 -2.5749 -4.5547 35 1 6.3699 -1.3733 -2.4781 36 1 2.3251 -0.3136 3.2430 37 1 0.6951 0.0708 2.6403 38 1 2.0659 1.1327 2.2384 39 1 0.3687 -1.9435 1.5508 40 1 1.5442 -2.5614 0.3656 41 1 2.8286 -4.4952 -0.9036 42 1 0.1854 -3.5614 3.2550 43 1 1.6565 -4.5443 3.7761 44 1 2.8099 -2.4157 4.5332 45 1 1.3391 -1.4328 4.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654136187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:13 Heat of formation + Delta-G solvation = 58.210257 kcal Electronic energy + Delta-G solvation = -24062.260621 eV Core-core repulsion = 20978.844099 eV Total energy + Delta-G solvation = -3083.416522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95450 -39.73804 -37.30263 -34.11684 -32.64127 -31.82096 -31.76448 -28.71095 -28.12364 -27.19396 -25.21406 -23.59685 -23.38112 -22.80661 -21.36019 -20.27169 -18.59503 -18.08697 -17.15396 -16.70707 -16.52414 -16.15899 -15.73124 -15.67035 -15.39003 -15.14755 -14.80375 -14.45274 -14.29278 -14.12638 -13.96844 -13.53744 -13.34438 -13.03854 -12.94359 -12.81075 -12.74974 -12.44385 -12.23443 -12.16642 -11.95843 -11.89765 -11.77376 -11.64121 -10.99264 -10.89822 -10.83407 -10.51328 -10.37132 -9.88320 -9.76896 -8.78754 -8.06591 -7.93262 -5.93071 0.34755 0.45826 0.78436 1.39505 1.53120 1.55729 1.75091 2.53522 2.82790 3.07781 3.31087 3.76583 3.89449 3.95287 4.05502 4.13679 4.23775 4.31037 4.42614 4.46243 4.53271 4.57684 4.59212 4.63598 4.72973 4.76441 4.83792 4.85465 4.86327 4.96182 4.99376 5.08638 5.09132 5.19062 5.24044 5.31161 5.39965 5.47894 5.48289 5.57866 5.60213 5.75548 6.05165 6.26669 6.47703 6.58199 6.73186 6.98089 7.65549 9.04250 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.006668 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.129887 B = 4198.375903 C = 5251.040414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 H 0.092 0.908 4 C -0.085 4.085 5 S -0.106 6.106 6 C -0.093 4.093 7 C -0.148 4.148 8 C -0.104 4.104 9 C -0.137 4.137 10 C -0.109 4.109 11 C -0.132 4.132 12 N -0.526 5.526 13 C 0.021 3.979 14 C 0.091 3.909 15 C 0.048 3.952 16 C -0.499 4.499 17 H 0.031 0.969 18 C 0.086 3.914 19 N -0.876 5.876 20 Si 0.902 3.098 21 H -0.300 1.300 22 H -0.262 1.262 23 H -0.284 1.284 24 C -0.215 4.215 25 C -0.197 4.197 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.067 0.933 39 H -0.006 1.006 40 H 0.121 0.879 41 H 0.256 0.744 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 7.902 -9.025 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 H 0.110 0.890 4 C -0.234 4.234 5 S 0.141 5.859 6 C -0.206 4.206 7 C -0.172 4.172 8 C -0.123 4.123 9 C -0.158 4.158 10 C -0.128 4.128 11 C -0.156 4.156 12 N -0.249 5.249 13 C -0.127 4.127 14 C -0.036 4.036 15 C 0.047 3.953 16 C -0.536 4.536 17 H 0.049 0.951 18 C -0.116 4.116 19 N -0.513 5.513 20 Si 0.730 3.270 21 H -0.228 1.228 22 H -0.186 1.186 23 H -0.210 1.210 24 C -0.253 4.253 25 C -0.235 4.235 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.012 0.988 40 H 0.138 0.862 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.136 8.419 -8.354 11.915 hybrid contribution -0.603 -1.078 -0.546 1.350 sum -1.738 7.341 -8.900 11.667 Atomic orbital electron populations 1.22343 0.95426 1.02087 1.03186 1.21484 0.93660 0.97389 0.88848 0.89016 1.23790 0.93239 1.04766 1.01589 1.85762 1.08531 1.67545 1.24053 1.22150 0.97178 1.02731 0.98571 1.21313 0.98175 1.01422 0.96293 1.21373 0.97762 0.97321 0.95889 1.21461 0.92374 1.00931 1.01002 1.21365 1.00891 0.96873 0.93679 1.20891 0.94259 1.01966 0.98532 1.62012 1.58765 1.02481 1.01635 1.22679 0.98519 0.97557 0.93964 1.21916 0.90536 0.87879 1.03304 1.18954 0.94073 0.95687 0.86563 1.20436 0.96874 1.40952 0.95321 0.95099 1.24764 0.97244 0.93609 0.95989 1.69728 1.29810 1.41778 1.10011 0.86470 0.84618 0.76311 0.79574 1.22765 1.18605 1.20995 1.23015 0.97012 0.94705 1.10591 1.23091 1.02213 0.96760 1.01396 0.90193 0.93417 0.91602 0.90222 0.88238 0.86008 0.83509 0.82973 0.83557 0.86797 0.91177 0.95909 0.91388 0.98828 0.86188 0.93375 0.91067 0.91998 0.91586 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 8.46 71.98 0.61 -3.92 16 2 C 0.10 3.04 2.35 44.92 0.11 3.14 16 3 H 0.09 2.65 7.89 -2.39 -0.02 2.63 16 4 C -0.09 -2.86 3.67 71.98 0.26 -2.59 16 5 S -0.11 -4.08 21.53 -56.49 -1.22 -5.30 16 6 C -0.09 -3.40 6.11 22.62 0.14 -3.26 16 7 C -0.15 -4.85 9.36 22.41 0.21 -4.65 16 8 C -0.10 -2.84 10.04 22.25 0.22 -2.62 16 9 C -0.14 -3.47 10.04 22.30 0.22 -3.25 16 10 C -0.11 -3.07 10.04 22.25 0.22 -2.84 16 11 C -0.13 -4.58 9.21 22.41 0.21 -4.37 16 12 N -0.53 -20.14 4.28 -897.05 -3.84 -23.97 16 13 C 0.02 0.69 7.67 127.69 0.98 1.67 16 14 C 0.09 3.98 3.66 86.30 0.32 4.29 16 15 C 0.05 2.33 1.89 -52.93 -0.10 2.23 16 16 C -0.50 -27.57 9.02 25.60 0.23 -27.33 16 17 H 0.03 1.79 7.88 -2.91 -0.02 1.77 16 18 C 0.09 4.63 5.12 84.65 0.43 5.06 16 19 N -0.88 -46.22 10.80 21.44 0.23 -45.99 16 20 Si 0.90 44.94 29.58 68.60 2.03 46.97 16 21 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.26 -12.64 6.51 99.48 0.65 -11.99 16 23 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 24 C -0.21 -9.80 9.88 30.60 0.30 -9.49 16 25 C -0.20 -8.42 7.92 30.60 0.24 -8.17 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.45 6.55 -2.39 -0.02 1.43 16 28 H 0.07 1.64 7.00 -2.39 -0.02 1.62 16 29 H 0.08 3.11 5.94 -2.39 -0.01 3.10 16 30 H 0.10 2.76 7.76 -2.39 -0.02 2.74 16 31 H 0.12 3.85 5.88 -2.91 -0.02 3.83 16 32 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 33 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.11 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.07 2.55 5.12 -2.39 -0.01 2.54 16 37 H 0.02 0.70 6.91 -2.39 -0.02 0.68 16 38 H 0.07 1.95 7.87 -2.39 -0.02 1.93 16 39 H -0.01 -0.27 6.54 -2.39 -0.02 -0.28 16 40 H 0.12 5.79 3.10 -2.39 -0.01 5.78 16 41 H 0.26 13.31 8.32 -92.70 -0.77 12.54 16 42 H 0.07 3.03 8.09 -2.39 -0.02 3.01 16 43 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.10 3.60 5.76 -2.39 -0.01 3.59 16 Total: -1.00 -60.16 358.62 2.73 -57.43 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.91 Total: 26.97 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 4.61 Total: -56.11 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -3.60 Total: -69.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -1.22 Total: -5.30 kcal Total: -60.16 2.73 -57.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654136187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.638 kcal (2) G-P(sol) polarization free energy of solvation -60.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds