Wall clock time and date at job start Tue Mar 31 2020 08:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46770 * 2 1 4 4 N 1.46497 * 109.47075 * 299.99723 * 3 2 1 5 5 C 1.36947 * 119.99921 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99733 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31614 * 120.00247 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99855 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47103 * 119.99938 * 9 7 5 12 12 H 1.48501 * 109.47569 * 240.00444 * 9 7 5 13 13 N 1.46495 * 109.47275 * 240.00301 * 2 1 3 14 14 C 1.34779 * 119.99959 * 174.57004 * 13 2 1 15 15 O 1.21563 * 120.00063 * 5.23923 * 14 13 2 16 16 C 1.47733 * 119.99801 * 185.24771 * 14 13 2 17 17 N 1.33011 * 120.16492 * 5.66584 * 16 14 13 18 18 C 1.31732 * 120.01239 * 179.97438 * 17 16 14 19 19 C 1.38806 * 120.34090 * 0.02562 * 18 17 16 20 20 N 1.32023 * 120.32407 * 359.97438 * 19 18 17 21 21 C 1.32827 * 119.98631 * 0.02562 * 20 19 18 22 22 N 1.38279 * 120.16770 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47427 * 119.99819 * 2 1 3 24 24 C 1.52994 * 117.49928 * 122.08765 * 23 2 1 25 25 C 1.53001 * 117.49333 * 53.42876 * 23 2 1 26 26 H 1.08997 * 109.46410 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47086 * 299.99868 * 1 2 3 28 28 H 1.08999 * 109.46887 * 60.00459 * 1 2 3 29 29 H 1.09000 * 109.47004 * 60.00250 * 3 2 1 30 30 H 1.09002 * 109.46974 * 179.97438 * 3 2 1 31 31 H 0.96991 * 120.00358 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00232 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00410 * 354.56053 * 13 2 1 34 34 H 1.07997 * 119.83033 * 180.26804 * 18 17 16 35 35 H 1.07998 * 119.83827 * 179.97438 * 19 18 17 36 36 H 0.96996 * 120.00535 * 354.11503 * 22 21 20 37 37 H 0.97001 * 119.99940 * 174.11027 * 22 21 20 38 38 H 1.09001 * 115.55034 * 267.76897 * 23 2 1 39 39 H 1.09005 * 117.49879 * 0.02562 * 24 23 2 40 40 H 1.08998 * 117.49811 * 145.02576 * 24 23 2 41 41 H 1.09004 * 117.49774 * 214.97991 * 25 23 2 42 42 H 1.08996 * 117.50122 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8829 3.4441 -1.4132 6 1 2.5044 3.9687 -0.7026 7 6 1.4197 4.0985 -2.5463 8 7 0.6619 3.4593 -3.4119 9 14 1.8709 5.8869 -2.8419 10 1 2.7256 6.3724 -1.7287 11 1 2.6129 6.0050 -4.1228 12 1 0.6334 6.7051 -2.9094 13 7 2.0184 -0.6905 -1.1962 14 6 3.3386 -0.7188 -1.4661 15 8 4.1318 -0.2551 -0.6703 16 6 3.8215 -1.3133 -2.7294 17 7 2.9535 -1.7191 -3.6519 18 6 3.3875 -2.2483 -4.7775 19 6 4.7493 -2.3864 -5.0082 20 7 5.6226 -1.9881 -4.1017 21 6 5.1993 -1.4527 -2.9622 22 7 6.1107 -1.0348 -2.0100 23 6 2.0401 -0.7212 1.2492 24 6 2.9553 -1.9298 1.0430 25 6 1.5132 -2.1329 1.5145 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 0.9938 1.6619 -1.8345 32 1 0.3385 3.9165 -4.2039 33 1 1.3917 -1.1275 -1.7938 34 1 2.6802 -2.5728 -5.5264 35 1 5.0961 -2.8217 -5.9337 36 1 7.0567 -1.2091 -2.1345 37 1 5.8040 -0.5672 -1.2174 38 1 2.2329 -0.0854 2.1133 39 1 3.1944 -2.2109 0.0174 40 1 3.7501 -2.0893 1.7717 41 1 1.3599 -2.4260 2.5531 42 1 0.8036 -2.5480 0.7988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698644990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:22 Heat of formation + Delta-G solvation = 73.602007 kcal Electronic energy + Delta-G solvation = -26190.465910 eV Core-core repulsion = 22593.716361 eV Total energy + Delta-G solvation = -3596.749549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22525 -39.95624 -37.27572 -35.44270 -34.89835 -33.59915 -33.21542 -31.39171 -29.84746 -29.19353 -26.07386 -25.36128 -23.74657 -23.45778 -22.09136 -21.52929 -21.13125 -18.99840 -18.30673 -17.59752 -17.47565 -17.21068 -16.04885 -15.66026 -15.31769 -15.00420 -14.85055 -14.35242 -14.32141 -13.85763 -13.56088 -13.26522 -13.20634 -12.83796 -12.13687 -12.04963 -11.90620 -11.70516 -11.53031 -11.31361 -11.05626 -10.85324 -10.77695 -10.73554 -10.49631 -10.21040 -10.08385 -9.92523 -9.65028 -9.53886 -9.02573 -8.76035 -8.62347 -7.96125 -6.79765 -5.69476 -2.95916 0.66553 1.37351 3.00741 3.25924 3.46699 3.52630 3.54605 3.62235 3.98883 4.05349 4.30150 4.39236 4.63494 4.69048 4.88173 5.11629 5.16714 5.18413 5.30952 5.34482 5.46641 5.58233 5.67209 5.74099 5.79729 6.00832 6.06766 6.18806 6.24221 6.31083 6.33557 6.40119 6.59921 6.67951 6.87546 7.04825 7.15527 7.30449 7.62139 7.77900 7.85832 8.13029 8.49609 8.57437 9.61020 10.19708 10.55049 11.53460 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010534 B = 0.006148 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.436484 B = 4553.358648 C = 6095.617749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.933 5.933 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.292 1.292 13 N -0.689 5.689 14 C 0.600 3.400 15 O -0.533 6.533 16 C -0.043 4.043 17 N -0.367 5.367 18 C -0.028 4.028 19 C 0.130 3.870 20 N -0.515 5.515 21 C 0.410 3.590 22 N -0.816 5.816 23 C -0.142 4.142 24 C -0.159 4.159 25 C -0.186 4.186 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.050 0.950 31 H 0.383 0.617 32 H 0.252 0.748 33 H 0.407 0.593 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.397 0.603 37 H 0.429 0.571 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -16.342 2.988 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.112 3.888 3 C 0.013 3.987 4 N -0.371 5.371 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.220 1.220 13 N -0.338 5.338 14 C 0.386 3.614 15 O -0.411 6.411 16 C -0.192 4.192 17 N -0.083 5.083 18 C -0.193 4.193 19 C -0.034 4.034 20 N -0.239 5.239 21 C 0.166 3.834 22 N -0.369 5.369 23 C -0.161 4.161 24 C -0.196 4.196 25 C -0.223 4.223 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.217 0.783 32 H 0.062 0.938 33 H 0.242 0.758 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.226 0.774 37 H 0.276 0.724 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.353 -15.724 3.761 17.031 hybrid contribution 0.058 0.837 -0.835 1.184 sum 5.411 -14.887 2.926 16.108 Atomic orbital electron populations 1.21982 0.92907 1.01483 1.04146 1.20161 0.93962 0.92616 0.82108 1.21097 0.98743 0.87705 0.91124 1.42274 1.61223 1.10482 1.23072 1.19257 1.24976 0.87622 1.04290 0.91354 1.24684 1.00835 0.98093 0.97535 1.69663 1.39634 1.35843 1.13097 0.86160 0.77465 0.85342 0.77535 1.20654 1.22097 1.21957 1.45707 1.06817 1.54963 1.26316 1.17169 0.83067 0.77712 0.83454 1.90366 1.54296 1.48324 1.48104 1.21398 0.89621 1.10063 0.98114 1.68079 1.37314 1.02445 1.00464 1.23353 0.95541 1.03783 0.96612 1.23732 0.90702 0.91906 0.97083 1.68143 1.38191 1.16114 1.01484 1.19132 0.88173 0.88060 0.88012 1.43322 1.08281 1.61479 1.23776 1.22534 1.04033 0.90226 0.99339 1.22897 0.92654 1.02116 1.01930 1.22996 0.97704 1.00030 1.01526 0.92791 0.90899 0.90614 0.95863 0.93233 0.78305 0.93789 0.75793 0.81274 0.81182 0.77405 0.72445 0.87285 0.89279 0.89533 0.89336 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.18 37.16 0.30 -1.93 16 2 C 0.20 3.25 0.55 -131.82 -0.07 3.18 16 3 C 0.14 2.98 4.83 -4.04 -0.02 2.96 16 4 N -0.73 -18.53 5.18 -59.91 -0.31 -18.84 16 5 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 9 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 N -0.69 -11.36 4.16 -48.57 -0.20 -11.56 16 14 C 0.60 10.54 5.06 -12.38 -0.06 10.48 16 15 O -0.53 -9.79 9.59 5.31 0.05 -9.74 16 16 C -0.04 -0.71 6.77 -82.65 -0.56 -1.27 16 17 N -0.37 -5.71 9.73 -9.49 -0.09 -5.80 16 18 C -0.03 -0.34 11.21 -17.38 -0.19 -0.53 16 19 C 0.13 1.48 11.22 -17.26 -0.19 1.29 16 20 N -0.52 -7.27 10.52 -11.99 -0.13 -7.40 16 21 C 0.41 6.39 7.77 -154.87 -1.20 5.19 16 22 N -0.82 -11.24 8.93 31.32 0.28 -10.96 16 23 C -0.14 -2.03 4.81 -90.62 -0.44 -2.46 16 24 C -0.16 -2.16 8.28 -26.70 -0.22 -2.38 16 25 C -0.19 -2.22 9.68 -26.69 -0.26 -2.48 16 26 H 0.05 0.68 6.91 -51.93 -0.36 0.32 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.33 6.86 -51.93 -0.36 0.98 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.14 5.96 -51.93 -0.31 0.83 16 31 H 0.38 10.18 6.35 -40.82 -0.26 9.92 16 32 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.41 6.37 7.87 -40.82 -0.32 6.05 16 34 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.40 4.42 8.95 -40.82 -0.37 4.05 16 37 H 0.43 6.40 5.33 -40.95 -0.22 6.18 16 38 H 0.11 1.54 8.06 -51.93 -0.42 1.12 16 39 H 0.09 1.33 5.13 -51.93 -0.27 1.06 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.05 7.19 -51.93 -0.37 0.68 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -33.38 339.34 -8.08 -41.46 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -5.33 Total: 22.73 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.16 Total: 4.72 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: 0.27 Total: -82.40 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.05 Total: -9.74 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.38 -8.08 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.062 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds