Wall clock time and date at job start Tue Mar 31 2020 08:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46770 * 2 1 4 4 N 1.46497 * 109.47075 * 299.99723 * 3 2 1 5 5 C 1.36947 * 119.99921 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99733 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31614 * 120.00247 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99855 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47202 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47103 * 119.99938 * 9 7 5 12 12 H 1.48501 * 109.47569 * 240.00444 * 9 7 5 13 13 N 1.46495 * 109.47275 * 240.00301 * 2 1 3 14 14 C 1.34779 * 119.99959 * 174.57004 * 13 2 1 15 15 O 1.21563 * 120.00063 * 5.23923 * 14 13 2 16 16 C 1.47733 * 119.99801 * 185.24771 * 14 13 2 17 17 N 1.33011 * 120.16492 * 5.66584 * 16 14 13 18 18 C 1.31732 * 120.01239 * 179.97438 * 17 16 14 19 19 C 1.38806 * 120.34090 * 0.02562 * 18 17 16 20 20 N 1.32023 * 120.32407 * 359.97438 * 19 18 17 21 21 C 1.32827 * 119.98631 * 0.02562 * 20 19 18 22 22 N 1.38279 * 120.16770 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47427 * 119.99819 * 2 1 3 24 24 C 1.52994 * 117.49928 * 122.08765 * 23 2 1 25 25 C 1.53001 * 117.49333 * 53.42876 * 23 2 1 26 26 H 1.08997 * 109.46410 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47086 * 299.99868 * 1 2 3 28 28 H 1.08999 * 109.46887 * 60.00459 * 1 2 3 29 29 H 1.09000 * 109.47004 * 60.00250 * 3 2 1 30 30 H 1.09002 * 109.46974 * 179.97438 * 3 2 1 31 31 H 0.96991 * 120.00358 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00232 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00410 * 354.56053 * 13 2 1 34 34 H 1.07997 * 119.83033 * 180.26804 * 18 17 16 35 35 H 1.07998 * 119.83827 * 179.97438 * 19 18 17 36 36 H 0.96996 * 120.00535 * 354.11503 * 22 21 20 37 37 H 0.97001 * 119.99940 * 174.11027 * 22 21 20 38 38 H 1.09001 * 115.55034 * 267.76897 * 23 2 1 39 39 H 1.09005 * 117.49879 * 0.02562 * 24 23 2 40 40 H 1.08998 * 117.49811 * 145.02576 * 24 23 2 41 41 H 1.09004 * 117.49774 * 214.97991 * 25 23 2 42 42 H 1.08996 * 117.50122 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8829 3.4441 -1.4132 6 1 2.5044 3.9687 -0.7026 7 6 1.4197 4.0985 -2.5463 8 7 0.6619 3.4593 -3.4119 9 14 1.8709 5.8869 -2.8419 10 1 2.7256 6.3724 -1.7287 11 1 2.6129 6.0050 -4.1228 12 1 0.6334 6.7051 -2.9094 13 7 2.0184 -0.6905 -1.1962 14 6 3.3386 -0.7188 -1.4661 15 8 4.1318 -0.2551 -0.6703 16 6 3.8215 -1.3133 -2.7294 17 7 2.9535 -1.7191 -3.6519 18 6 3.3875 -2.2483 -4.7775 19 6 4.7493 -2.3864 -5.0082 20 7 5.6226 -1.9881 -4.1017 21 6 5.1993 -1.4527 -2.9622 22 7 6.1107 -1.0348 -2.0100 23 6 2.0401 -0.7212 1.2492 24 6 2.9553 -1.9298 1.0430 25 6 1.5132 -2.1329 1.5145 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 0.9938 1.6619 -1.8345 32 1 0.3385 3.9165 -4.2039 33 1 1.3917 -1.1275 -1.7938 34 1 2.6802 -2.5728 -5.5264 35 1 5.0961 -2.8217 -5.9337 36 1 7.0567 -1.2091 -2.1345 37 1 5.8040 -0.5672 -1.2174 38 1 2.2329 -0.0854 2.1133 39 1 3.1944 -2.2109 0.0174 40 1 3.7501 -2.0893 1.7717 41 1 1.3599 -2.4260 2.5531 42 1 0.8036 -2.5480 0.7988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698644990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:21 Heat of formation + Delta-G solvation = 48.305367 kcal Electronic energy + Delta-G solvation = -26191.562855 eV Core-core repulsion = 22593.716361 eV Total energy + Delta-G solvation = -3597.846494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35344 -41.16117 -38.51928 -36.62324 -36.45581 -34.88697 -34.60551 -33.11279 -31.39447 -30.40475 -27.68700 -26.53911 -25.51208 -24.57527 -23.13549 -23.01016 -22.41874 -20.32777 -19.43976 -19.29485 -18.67286 -18.50524 -17.34606 -17.00606 -16.65576 -16.33936 -16.06518 -15.89970 -15.46765 -15.27291 -15.02190 -14.84257 -14.52923 -14.28955 -13.58742 -13.50691 -13.29436 -13.00216 -12.85280 -12.79398 -12.61900 -12.41415 -12.27216 -12.10096 -11.98950 -11.78249 -11.57194 -11.39132 -11.12839 -10.96205 -10.65810 -10.09098 -9.96728 -9.03929 -8.92330 -7.94455 -5.20523 -0.40259 0.32402 1.42662 1.43320 1.53257 1.79054 2.09624 2.51217 2.54188 2.89329 2.97112 3.23337 3.39010 3.42095 3.62907 3.66008 3.98515 4.00623 4.18018 4.18768 4.28445 4.37356 4.38835 4.49457 4.57325 4.80861 4.86588 4.92068 4.96464 5.08426 5.19799 5.29437 5.32754 5.34793 5.36791 5.47635 5.64356 6.00733 6.27613 6.28682 6.49691 6.64665 7.03270 7.30749 7.34849 8.11172 8.37370 9.28596 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010534 B = 0.006148 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.436484 B = 4553.358648 C = 6095.617749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.205 3.795 3 C 0.142 3.858 4 N -0.730 5.730 5 C -0.239 4.239 6 H 0.065 0.935 7 C -0.072 4.072 8 N -0.963 5.963 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.296 1.296 12 H -0.289 1.289 13 N -0.687 5.687 14 C 0.593 3.407 15 O -0.552 6.552 16 C -0.084 4.084 17 N -0.389 5.389 18 C -0.026 4.026 19 C 0.145 3.855 20 N -0.525 5.525 21 C 0.395 3.605 22 N -0.813 5.813 23 C -0.157 4.157 24 C -0.164 4.164 25 C -0.156 4.156 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.376 0.624 32 H 0.250 0.750 33 H 0.409 0.591 34 H 0.207 0.793 35 H 0.221 0.779 36 H 0.408 0.592 37 H 0.424 0.576 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 -17.707 2.536 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 C 0.014 3.986 4 N -0.373 5.373 5 C -0.372 4.372 6 H 0.083 0.917 7 C -0.265 4.265 8 N -0.614 5.614 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.224 1.224 12 H -0.215 1.215 13 N -0.336 5.336 14 C 0.380 3.620 15 O -0.431 6.431 16 C -0.230 4.230 17 N -0.105 5.105 18 C -0.193 4.193 19 C -0.021 4.021 20 N -0.249 5.249 21 C 0.153 3.847 22 N -0.365 5.365 23 C -0.176 4.176 24 C -0.201 4.201 25 C -0.193 4.193 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.209 0.791 32 H 0.058 0.942 33 H 0.245 0.755 34 H 0.224 0.776 35 H 0.238 0.762 36 H 0.238 0.762 37 H 0.268 0.732 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.386 -17.090 3.377 18.234 hybrid contribution 0.114 1.173 -0.799 1.424 sum 5.500 -15.917 2.578 17.037 Atomic orbital electron populations 1.21920 0.91744 1.03112 1.02966 1.20004 0.94682 0.90019 0.83400 1.21162 0.97465 0.90658 0.89269 1.42354 1.61012 1.09766 1.24186 1.19578 1.24348 0.89063 1.04169 0.91662 1.25435 1.01383 1.02064 0.97572 1.69806 1.40855 1.37268 1.13455 0.85166 0.77212 0.80731 0.77241 1.19609 1.22375 1.21548 1.45666 1.06712 1.54812 1.26370 1.17454 0.83151 0.77490 0.83876 1.90340 1.54692 1.49208 1.48866 1.21266 0.90380 1.12822 0.98545 1.68043 1.37791 1.03225 1.01479 1.24116 0.96989 1.02156 0.96069 1.24609 0.90239 0.89561 0.97676 1.68266 1.38916 1.16359 1.01407 1.19283 0.88118 0.88535 0.88808 1.43246 1.08758 1.61149 1.23357 1.22409 1.05837 0.91181 0.98186 1.22856 0.93990 1.01826 1.01445 1.23080 0.96277 0.96944 1.02955 0.89717 0.90288 0.93471 0.95872 0.95273 0.79119 0.94157 0.75497 0.77598 0.76219 0.76188 0.73153 0.87310 0.90708 0.88993 0.87032 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.18 71.98 0.59 -3.58 16 2 C 0.20 6.80 0.55 3.61 0.00 6.81 16 3 C 0.14 6.16 4.83 86.38 0.42 6.57 16 4 N -0.73 -38.33 5.18 -343.44 -1.78 -40.11 16 5 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 6 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 7 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.96 -59.88 13.06 21.65 0.28 -59.60 16 9 Si 0.97 48.05 29.55 68.60 2.03 50.08 16 10 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 N -0.69 -23.09 4.16 -425.86 -1.77 -24.87 16 14 C 0.59 21.52 5.06 86.75 0.44 21.95 16 15 O -0.55 -21.13 9.59 -3.91 -0.04 -21.16 16 16 C -0.08 -2.85 6.77 42.01 0.28 -2.57 16 17 N -0.39 -11.94 9.73 -183.94 -1.79 -13.73 16 18 C -0.03 -0.58 11.21 84.84 0.95 0.37 16 19 C 0.14 2.87 11.22 84.80 0.95 3.82 16 20 N -0.53 -14.06 10.52 -191.86 -2.02 -16.08 16 21 C 0.40 12.36 7.77 133.50 1.04 13.40 16 22 N -0.81 -22.94 8.93 -54.83 -0.49 -23.43 16 23 C -0.16 -4.37 4.81 -10.80 -0.05 -4.42 16 24 C -0.16 -4.34 8.28 30.62 0.25 -4.09 16 25 C -0.16 -3.35 9.68 30.62 0.30 -3.06 16 26 H 0.08 1.97 6.91 -2.39 -0.02 1.95 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.68 6.86 -2.39 -0.02 1.66 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 1.41 5.96 -2.39 -0.01 1.39 16 31 H 0.38 20.64 6.35 -92.72 -0.59 20.05 16 32 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.41 13.05 7.87 -92.71 -0.73 12.32 16 34 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.41 9.19 8.95 -92.71 -0.83 8.36 16 37 H 0.42 13.22 5.33 -94.80 -0.51 12.71 16 38 H 0.11 3.02 8.06 -2.39 -0.02 3.00 16 39 H 0.07 2.24 5.13 -2.38 -0.01 2.23 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.10 1.99 7.19 -2.39 -0.02 1.97 16 Total: -1.00 -73.82 339.34 -0.65 -74.47 By element: Atomic # 1 Polarization: 57.77 SS G_CDS: -1.55 Total: 56.22 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.48 Total: 18.21 kcal Atomic # 7 Polarization: -170.25 SS G_CDS: -7.57 Total: -177.82 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.04 Total: -21.16 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -73.82 -0.65 -74.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.777 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds