Wall clock time and date at job start Tue Mar 31 2020 08:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 N 1.46506 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00045 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00421 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99620 * 179.97438 * 5 4 3 8 8 N 1.31623 * 119.99555 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00040 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47241 * 90.00451 * 9 7 5 11 11 H 1.48509 * 109.47054 * 210.00314 * 9 7 5 12 12 H 1.48499 * 109.47482 * 330.00039 * 9 7 5 13 13 N 1.46497 * 109.47256 * 119.99731 * 2 1 3 14 14 C 1.34768 * 120.00305 * 296.05314 * 13 2 1 15 15 O 1.21565 * 120.00146 * 4.61642 * 14 13 2 16 16 C 1.47738 * 120.00135 * 184.61540 * 14 13 2 17 17 N 1.33017 * 120.16193 * 4.76527 * 16 14 13 18 18 C 1.31719 * 120.00970 * 179.97438 * 17 16 14 19 19 C 1.38800 * 120.34509 * 0.02562 * 18 17 16 20 20 N 1.32027 * 120.32703 * 359.97438 * 19 18 17 21 21 C 1.32830 * 119.98317 * 0.02562 * 20 19 18 22 22 N 1.38272 * 120.17202 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46910 * 240.00206 * 2 1 3 24 24 C 1.52996 * 117.49733 * 11.56986 * 23 2 1 25 25 C 1.52998 * 117.49737 * 302.91106 * 23 2 1 26 26 H 1.09007 * 109.46923 * 299.99969 * 1 2 3 27 27 H 1.08997 * 109.47559 * 59.99615 * 1 2 3 28 28 H 1.08993 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47323 * 300.00010 * 3 2 1 30 30 H 1.08995 * 109.47572 * 60.00022 * 3 2 1 31 31 H 0.96999 * 119.99730 * 359.97438 * 4 3 2 32 32 H 0.97001 * 119.99321 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99656 * 116.04915 * 13 2 1 34 34 H 1.08000 * 119.82942 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.83971 * 179.97438 * 19 18 17 36 36 H 0.97005 * 120.00245 * 146.79897 * 22 21 20 37 37 H 0.96998 * 119.99858 * 326.80345 * 22 21 20 38 38 H 1.09002 * 115.54907 * 157.24709 * 23 2 1 39 39 H 1.09000 * 117.50298 * 0.02562 * 24 23 2 40 40 H 1.09004 * 117.49290 * 145.02212 * 24 23 2 41 41 H 1.08993 * 117.49891 * 214.98230 * 25 23 2 42 42 H 1.09000 * 117.49934 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6285 -0.0002 6 1 3.6497 3.5638 0.0002 7 6 5.5778 2.6284 -0.0002 8 7 6.2359 3.7683 -0.0004 9 14 6.5117 1.0107 -0.0002 10 1 6.7593 0.5819 -1.4002 11 1 7.8094 1.1882 0.6999 12 1 5.7092 -0.0242 0.7000 13 7 2.0183 -0.6905 1.1962 14 6 1.7597 -0.1856 2.4186 15 8 1.0511 0.7955 2.5336 16 6 2.3374 -0.8242 3.6190 17 7 3.1882 -1.8388 3.4923 18 6 3.7019 -2.4057 4.5646 19 6 3.3598 -1.9505 5.8305 20 7 2.5166 -0.9445 5.9719 21 6 1.9909 -0.3632 4.8994 22 7 1.1078 0.6910 5.0429 23 6 2.0399 -0.7212 -1.2493 24 6 1.0218 -1.0400 -2.3459 25 6 1.5802 -2.1638 -1.4693 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9564 0.8899 31 1 3.9900 0.6025 -0.0006 32 1 7.2059 3.7682 0.0000 33 1 2.5278 -1.5113 1.1083 34 1 4.3921 -3.2295 4.4584 35 1 3.7855 -2.4216 6.7041 36 1 1.0889 1.4013 4.3825 37 1 0.5072 0.7204 5.8041 38 1 3.0517 -0.4623 -1.5615 39 1 -0.0112 -0.7356 -2.1777 40 1 1.3639 -0.9912 -3.3798 41 1 2.2892 -2.8538 -1.9267 42 1 0.9140 -2.5989 -0.7243 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698644991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:24 Heat of formation + Delta-G solvation = 44.576400 kcal Electronic energy + Delta-G solvation = -26044.575224 eV Core-core repulsion = 22446.567030 eV Total energy + Delta-G solvation = -3598.008194 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.29639 -41.08635 -39.00129 -36.62626 -36.42638 -34.92817 -34.70590 -33.33915 -31.69415 -30.42308 -27.80634 -26.60083 -25.12126 -24.46762 -23.87598 -23.15881 -21.97536 -20.38095 -19.70129 -19.40108 -18.77795 -18.46562 -17.24528 -16.95808 -16.79144 -16.47219 -16.32722 -15.95807 -15.46980 -15.36410 -15.22448 -14.74943 -14.54172 -14.25457 -13.92082 -13.84412 -13.41441 -13.18553 -12.89415 -12.67230 -12.63892 -12.37398 -12.31156 -12.09297 -12.02682 -11.86538 -11.48928 -11.30782 -11.13188 -11.02146 -10.86133 -10.14313 -10.04619 -9.26781 -9.13182 -8.05702 -5.36994 -0.47690 0.20520 1.30072 1.34130 1.41416 1.74773 2.01531 2.43548 2.48055 2.82931 2.96621 3.16543 3.25817 3.43946 3.53179 3.61477 3.72246 3.84058 4.12353 4.15422 4.17394 4.22960 4.37422 4.45337 4.61198 4.77456 4.85608 4.87978 4.95754 5.02909 5.09745 5.25111 5.30625 5.31833 5.41751 5.58816 5.72590 5.98538 6.17788 6.35128 6.47334 6.62125 6.98424 7.04930 7.22768 7.81166 8.02801 9.16372 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.006547 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.645111 B = 4275.984728 C = 5530.984073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.206 3.794 3 C 0.146 3.854 4 N -0.745 5.745 5 C -0.228 4.228 6 H 0.051 0.949 7 C -0.064 4.064 8 N -0.984 5.984 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.296 1.296 12 H -0.257 1.257 13 N -0.689 5.689 14 C 0.583 3.417 15 O -0.553 6.553 16 C -0.065 4.065 17 N -0.398 5.398 18 C -0.009 4.009 19 C 0.135 3.865 20 N -0.514 5.514 21 C 0.389 3.611 22 N -0.826 5.826 23 C -0.185 4.185 24 C -0.158 4.158 25 C -0.157 4.157 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.364 0.636 32 H 0.257 0.743 33 H 0.411 0.589 34 H 0.212 0.788 35 H 0.221 0.779 36 H 0.420 0.580 37 H 0.409 0.591 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -19.917 6.750 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.121 3.879 3 C 0.019 3.981 4 N -0.390 5.390 5 C -0.359 4.359 6 H 0.069 0.931 7 C -0.255 4.255 8 N -0.635 5.635 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.223 1.223 12 H -0.182 1.182 13 N -0.339 5.339 14 C 0.369 3.631 15 O -0.432 6.432 16 C -0.211 4.211 17 N -0.115 5.115 18 C -0.175 4.175 19 C -0.030 4.030 20 N -0.237 5.237 21 C 0.148 3.852 22 N -0.377 5.377 23 C -0.204 4.204 24 C -0.195 4.195 25 C -0.194 4.194 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.198 0.802 32 H 0.066 0.934 33 H 0.247 0.753 34 H 0.229 0.771 35 H 0.238 0.762 36 H 0.258 0.742 37 H 0.241 0.759 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.977 -18.881 6.704 23.342 hybrid contribution 1.235 -0.047 0.093 1.239 sum -10.742 -18.928 6.798 22.801 Atomic orbital electron populations 1.22192 0.92351 1.03103 1.03372 1.19986 0.94761 0.90263 0.82919 1.21139 0.82930 0.95290 0.98764 1.42509 1.02248 1.03579 1.90714 1.19020 0.89781 0.86359 1.40761 0.93133 1.25460 0.97077 1.00078 1.02935 1.69894 1.07032 1.26516 1.60086 0.85430 0.77863 0.80379 0.78322 1.19795 1.22280 1.18211 1.45724 1.55748 1.28185 1.04272 1.17661 0.79720 0.82706 0.83011 1.90506 1.39682 1.27033 1.85931 1.21558 1.05758 1.00259 0.93499 1.68087 1.03533 1.04577 1.35295 1.24237 1.02322 1.02794 0.88177 1.24672 0.88997 0.88879 1.00498 1.68371 1.12354 1.12217 1.30743 1.19182 0.88673 0.88452 0.88867 1.42468 1.39317 1.23685 1.32181 1.22329 1.00313 1.00270 0.97450 1.23209 0.98883 1.01817 0.95573 1.23052 1.03522 0.89917 1.02929 0.92097 0.90076 0.90528 0.95245 0.94990 0.80192 0.93423 0.75298 0.77134 0.76247 0.74175 0.75911 0.89184 0.86774 0.87942 0.87499 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 7.08 71.98 0.51 -3.44 16 2 C 0.21 6.44 0.54 3.60 0.00 6.44 16 3 C 0.15 6.15 4.91 86.38 0.42 6.57 16 4 N -0.74 -36.92 4.83 -343.45 -1.66 -38.58 16 5 C -0.23 -13.81 10.47 84.03 0.88 -12.93 16 6 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 7 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16 8 N -0.98 -65.48 13.97 21.65 0.30 -65.18 16 9 Si 0.95 47.51 27.73 68.60 1.90 49.42 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 13 N -0.69 -21.65 4.71 -425.88 -2.01 -23.66 16 14 C 0.58 20.17 7.20 86.76 0.62 20.80 16 15 O -0.55 -20.70 10.09 -3.92 -0.04 -20.74 16 16 C -0.07 -2.06 6.77 42.01 0.28 -1.78 16 17 N -0.40 -10.89 9.72 -183.94 -1.79 -12.68 16 18 C -0.01 -0.16 11.21 84.84 0.95 0.79 16 19 C 0.14 2.35 11.22 84.80 0.95 3.30 16 20 N -0.51 -12.80 10.52 -191.87 -2.02 -14.82 16 21 C 0.39 11.40 7.77 133.50 1.04 12.44 16 22 N -0.83 -22.26 8.40 -54.83 -0.46 -22.72 16 23 C -0.18 -5.05 4.88 -10.79 -0.05 -5.10 16 24 C -0.16 -3.22 9.62 30.62 0.29 -2.93 16 25 C -0.16 -3.04 9.67 30.62 0.30 -2.75 16 26 H 0.06 1.83 6.30 -2.38 -0.02 1.81 16 27 H 0.08 1.88 6.83 -2.39 -0.02 1.86 16 28 H 0.08 1.64 7.01 -2.39 -0.02 1.62 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 1.51 6.04 -2.39 -0.01 1.50 16 31 H 0.36 17.29 4.50 -92.71 -0.42 16.87 16 32 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 33 H 0.41 11.84 7.72 -92.71 -0.72 11.12 16 34 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.42 12.84 6.33 -92.70 -0.59 12.25 16 37 H 0.41 8.71 8.95 -92.71 -0.83 7.88 16 38 H 0.09 2.97 7.09 -2.39 -0.02 2.95 16 39 H 0.11 2.05 5.87 -2.39 -0.01 2.04 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 1.82 7.42 -2.39 -0.02 1.81 16 Total: -1.00 -79.05 338.53 -0.59 -79.64 By element: Atomic # 1 Polarization: 52.90 SS G_CDS: -1.50 Total: 51.40 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.67 Total: 17.92 kcal Atomic # 7 Polarization: -170.01 SS G_CDS: -7.63 Total: -177.64 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.04 Total: -20.74 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.90 Total: 49.42 kcal Total: -79.05 -0.59 -79.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698644991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.220 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds