Wall clock time and date at job start Tue Mar 31 2020 08:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00116 * 2 1 4 4 N 1.46495 * 109.47431 * 124.99606 * 3 2 1 5 5 C 1.34820 * 126.59519 * 125.00213 * 4 3 2 6 6 C 1.36597 * 106.83727 * 180.24451 * 5 4 3 7 7 C 1.47527 * 125.76547 * 179.71308 * 6 5 4 8 8 O 1.21593 * 120.00047 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99610 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00232 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47193 * 34.99869 * 10 9 7 12 12 C 1.53000 * 109.47807 * 155.00120 * 10 9 7 13 13 N 1.46502 * 109.46619 * 305.00246 * 12 10 9 14 14 C 1.36941 * 119.99560 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00121 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99782 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00252 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00090 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46769 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47184 * 119.99866 * 18 16 14 21 21 H 1.48498 * 109.47184 * 240.00577 * 18 16 14 22 22 C 1.53003 * 109.47190 * 275.00308 * 10 9 7 23 23 C 1.52997 * 117.50033 * 128.74068 * 22 10 9 24 24 C 1.53000 * 117.49747 * 60.08302 * 22 10 9 25 25 N 1.34396 * 108.45930 * 359.56394 * 6 5 4 26 26 N 1.28759 * 109.52721 * 0.44454 * 25 6 5 27 27 H 1.08004 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00019 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00168 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47263 * 4.99396 * 3 2 1 31 31 H 1.09007 * 109.46982 * 244.99495 * 3 2 1 32 32 H 1.08002 * 126.57680 * 359.97185 * 5 4 3 33 33 H 0.97003 * 120.00203 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.46916 * 64.99991 * 12 10 9 35 35 H 1.08997 * 109.47528 * 184.99675 * 12 10 9 36 36 H 0.96999 * 120.00500 * 359.97438 * 13 12 10 37 37 H 0.96998 * 120.00011 * 179.97438 * 17 16 14 38 38 H 1.08996 * 115.55116 * 274.41262 * 22 10 9 39 39 H 1.08999 * 117.50161 * 0.02562 * 23 22 10 40 40 H 1.09003 * 117.49964 * 145.02132 * 23 22 10 41 41 H 1.09004 * 117.49798 * 214.98629 * 24 22 10 42 42 H 1.09003 * 117.50074 * 359.97338 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3229 1.5498 1.0741 6 6 4.7907 1.4813 2.3556 7 6 6.1960 1.6524 2.7709 8 8 7.0532 1.8756 1.9379 9 7 6.5295 1.5614 4.0735 10 6 7.9248 1.7319 4.4860 11 1 8.4038 2.4755 3.8491 12 6 7.9728 2.2004 5.9418 13 7 7.1670 3.4148 6.0906 14 6 7.0601 4.0197 7.3145 15 1 7.5701 3.6017 8.1699 16 6 6.2971 5.1707 7.4555 17 7 5.6761 5.6804 6.4129 18 14 6.1506 5.9955 9.1251 19 1 6.9375 5.2308 10.1257 20 1 6.6740 7.3826 9.0397 21 1 4.7243 6.0291 9.5372 22 6 8.6620 0.3975 4.3552 23 6 9.9802 0.3919 3.5786 24 6 8.7279 -0.2398 2.9658 25 7 3.7539 1.2349 3.1745 26 7 2.6727 1.1366 2.4823 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 4.9065 1.7376 0.1850 33 1 5.8455 1.3837 4.7380 34 1 7.5744 1.4185 6.5884 35 1 9.0047 2.4123 6.2215 36 1 6.7093 3.7905 5.3223 37 1 5.1426 6.4845 6.5116 38 1 8.5799 -0.2709 5.2122 39 1 10.3226 1.3388 3.1613 40 1 10.7653 -0.2805 3.9245 41 1 8.6894 -1.3277 2.9088 42 1 8.2457 0.2912 2.1451 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699594829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:38 Heat of formation + Delta-G solvation = 99.839691 kcal Electronic energy + Delta-G solvation = -24533.567807 eV Core-core repulsion = 20937.956009 eV Total energy + Delta-G solvation = -3595.611798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.19748 -40.84910 -38.35242 -36.91062 -36.59238 -34.97769 -33.76160 -33.00314 -31.84646 -29.68232 -27.99736 -26.01403 -24.71333 -23.36791 -23.15947 -23.01193 -21.84690 -21.26884 -20.90449 -19.44080 -18.88859 -17.47916 -17.17569 -17.10831 -16.64565 -16.40929 -16.12993 -15.84260 -15.52732 -15.28142 -15.17288 -14.89199 -14.56549 -14.28927 -13.71490 -13.48507 -13.17473 -13.04961 -12.82676 -12.69077 -12.50753 -12.47176 -12.25922 -12.21309 -12.02733 -11.83997 -11.36348 -11.32499 -11.11411 -10.98732 -10.88383 -10.56578 -10.29751 -9.90623 -9.00504 -7.93137 -5.22958 0.17540 0.66276 0.80643 1.47898 1.49069 1.59128 1.60954 2.13490 2.28965 2.56663 3.02586 3.26344 3.41038 3.46582 3.60771 3.79782 3.83674 3.97174 4.00481 4.11499 4.15859 4.21326 4.33669 4.47553 4.49287 4.54088 4.67180 4.75302 4.86694 4.91501 4.93453 5.08195 5.13470 5.33246 5.39114 5.43801 5.50953 5.57146 5.58412 5.67025 6.27066 6.49143 6.94400 7.19556 7.34177 8.07589 8.31456 9.30264 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.004051 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.906053 B = 6909.488016 C = 9067.303467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.195 4.195 3 C 0.140 3.860 4 N -0.347 5.347 5 C 0.110 3.890 6 C -0.126 4.126 7 C 0.606 3.394 8 O -0.562 6.562 9 N -0.694 5.694 10 C 0.179 3.821 11 H 0.068 0.932 12 C 0.149 3.851 13 N -0.743 5.743 14 C -0.242 4.242 15 H 0.080 0.920 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.295 1.295 21 H -0.295 1.295 22 C -0.171 4.171 23 C -0.158 4.158 24 C -0.181 4.181 25 N -0.230 5.230 26 N -0.088 5.088 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.241 0.759 33 H 0.407 0.593 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.373 0.627 37 H 0.249 0.751 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -14.506 -17.163 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.214 4.214 3 C 0.022 3.978 4 N -0.131 5.131 5 C -0.048 4.048 6 C -0.266 4.266 7 C 0.392 3.608 8 O -0.442 6.442 9 N -0.342 5.342 10 C 0.075 3.925 11 H 0.086 0.914 12 C 0.022 3.978 13 N -0.386 5.386 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.222 1.222 21 H -0.223 1.223 22 C -0.190 4.190 23 C -0.196 4.196 24 C -0.218 4.218 25 N -0.104 5.104 26 N -0.068 5.068 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.169 0.831 32 H 0.257 0.743 33 H 0.243 0.757 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.205 0.795 37 H 0.058 0.942 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.995 -14.617 -16.567 22.651 hybrid contribution -0.099 1.020 0.313 1.072 sum -5.095 -13.596 -16.254 21.795 Atomic orbital electron populations 1.24203 0.95357 1.03738 0.94868 1.22866 0.96719 0.97209 1.04624 1.21616 0.92223 0.98579 0.85372 1.50862 1.07033 1.46379 1.08846 1.23871 0.84818 0.95660 1.00439 1.21563 0.94786 1.18325 0.91922 1.16900 0.85401 0.75790 0.82741 1.90676 1.49863 1.51580 1.52054 1.45789 1.10398 1.70435 1.07550 1.20646 0.80849 0.95592 0.95412 0.91419 1.21064 0.95269 0.88430 0.93033 1.42534 1.58751 1.28666 1.08691 1.19681 1.23754 1.05320 0.88577 0.90187 1.25591 1.00782 0.99639 1.00841 1.69858 1.37607 1.23932 1.30602 0.85050 0.76945 0.77927 0.79677 1.18734 1.22198 1.22279 1.22550 1.01596 0.97881 0.96999 1.22988 0.90902 1.02904 1.02770 1.23218 1.02204 1.00313 0.96102 1.74672 0.97064 1.10625 1.28008 1.81910 1.16811 1.22981 0.85081 0.86905 0.86666 0.87022 0.86833 0.83092 0.74254 0.75741 0.94648 0.93915 0.79483 0.94237 0.86498 0.89527 0.86628 0.88002 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 14.32 67.78 0.97 -0.40 16 2 C -0.20 -2.23 9.72 25.65 0.25 -1.98 16 3 C 0.14 1.50 6.98 85.63 0.60 2.10 16 4 N -0.35 -7.36 3.68 -350.83 -1.29 -8.65 16 5 C 0.11 2.48 11.27 83.85 0.95 3.43 16 6 C -0.13 -4.04 6.99 40.82 0.29 -3.75 16 7 C 0.61 21.55 7.15 86.69 0.62 22.17 16 8 O -0.56 -20.78 13.89 -4.01 -0.06 -20.84 16 9 N -0.69 -25.33 4.50 -445.71 -2.00 -27.33 16 10 C 0.18 6.38 2.43 44.99 0.11 6.49 16 11 H 0.07 2.70 7.33 -2.39 -0.02 2.68 16 12 C 0.15 6.03 5.80 86.38 0.50 6.53 16 13 N -0.74 -38.77 5.43 -343.44 -1.87 -40.63 16 14 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 15 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 16 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 17 N -0.97 -61.37 13.06 21.65 0.28 -61.08 16 18 Si 0.97 47.30 29.55 68.60 2.03 49.32 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 22 C -0.17 -4.84 5.36 -10.79 -0.06 -4.89 16 23 C -0.16 -3.91 10.18 30.62 0.31 -3.60 16 24 C -0.18 -4.81 9.74 30.62 0.30 -4.51 16 25 N -0.23 -8.16 12.04 -49.99 -0.60 -8.76 16 26 N -0.09 -2.70 13.64 37.02 0.50 -2.20 16 27 H 0.11 0.84 7.84 -2.91 -0.02 0.82 16 28 H 0.12 0.89 8.06 -2.91 -0.02 0.87 16 29 H 0.11 1.39 8.06 -2.91 -0.02 1.36 16 30 H 0.11 1.01 7.79 -2.39 -0.02 0.99 16 31 H 0.15 0.47 8.08 -2.38 -0.02 0.45 16 32 H 0.24 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.41 15.64 8.29 -92.71 -0.77 14.87 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.37 21.22 7.33 -92.71 -0.68 20.54 16 37 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 39 H 0.09 2.29 8.05 -2.39 -0.02 2.28 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.10 2.29 8.14 -2.38 -0.02 2.28 16 42 H 0.10 3.05 5.01 -2.39 -0.01 3.04 16 Total: -1.00 -76.11 363.26 2.73 -73.38 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.40 Total: 42.13 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 6.14 Total: 4.67 kcal Atomic # 7 Polarization: -143.68 SS G_CDS: -4.98 Total: -148.66 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.06 Total: -20.84 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -76.11 2.73 -73.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699594829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.216 kcal (2) G-P(sol) polarization free energy of solvation -76.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds