Wall clock time and date at job start Tue Mar 31 2020 08:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 C 1.53003 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46907 * 180.02562 * 4 3 2 6 6 N 1.40588 * 127.38085 * 272.74932 * 5 4 3 7 7 N 1.28910 * 106.81665 * 180.26701 * 6 5 4 8 8 N 1.28421 * 110.31338 * 359.77213 * 7 6 5 9 9 C 1.31471 * 110.51123 * 359.97438 * 8 7 6 10 10 N 1.38382 * 126.43826 * 179.97438 * 9 8 7 11 11 C 1.46899 * 110.99766 * 253.88842 * 10 9 8 12 12 C 1.50703 * 109.47199 * 59.98616 * 11 10 9 13 13 H 1.07999 * 119.99853 * 3.99815 * 12 11 10 14 14 C 1.37878 * 120.00182 * 183.99034 * 12 11 10 15 15 N 1.31517 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47270 * 60.00433 * 16 14 12 18 18 H 1.48503 * 109.47341 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47342 * 299.99980 * 16 14 12 20 20 C 1.46897 * 111.00047 * 17.84306 * 10 9 8 21 21 C 1.50704 * 109.46905 * 163.42776 * 20 10 9 22 22 C 1.34515 * 125.78785 * 95.01908 * 21 20 10 23 23 C 1.41381 * 106.84138 * 179.97438 * 22 21 20 24 24 C 1.34514 * 106.83821 * 359.97438 * 23 22 21 25 25 O 1.34297 * 125.78859 * 275.01259 * 21 20 10 26 26 H 1.09000 * 109.47727 * 59.99764 * 1 2 3 27 27 H 1.09006 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47153 * 299.99510 * 1 2 3 29 29 H 1.09004 * 109.47153 * 240.00489 * 2 1 3 30 30 H 1.08998 * 109.47260 * 120.00014 * 2 1 3 31 31 H 1.08999 * 109.46993 * 59.99842 * 3 2 1 32 32 H 1.09008 * 109.47076 * 300.00002 * 3 2 1 33 33 H 1.08992 * 109.47305 * 59.99870 * 4 3 2 34 34 H 1.08998 * 109.46860 * 299.99791 * 4 3 2 35 35 H 1.09001 * 109.47399 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47539 * 299.98931 * 11 10 9 37 37 H 0.96997 * 119.99639 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47006 * 43.43052 * 20 10 9 39 39 H 1.09005 * 109.47161 * 283.42913 * 20 10 9 40 40 H 1.08006 * 126.57837 * 359.97301 * 22 21 20 41 41 H 1.08000 * 126.57879 * 180.02562 * 23 22 21 42 42 H 1.08006 * 125.78842 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 7 4.2917 3.6470 -1.1155 7 7 4.7201 4.7755 -0.6630 8 7 4.7757 4.7493 0.6197 9 6 4.3786 3.5814 1.0743 10 7 4.3081 3.1968 2.4017 11 6 5.3910 2.2626 2.7373 12 6 6.7214 2.9285 2.4969 13 1 6.7598 3.9642 2.1933 14 6 7.8895 2.2155 2.6645 15 7 7.8427 0.9541 3.0338 16 14 9.5385 3.0406 2.3657 17 1 9.6881 4.1958 3.2868 18 1 10.6316 2.0660 2.6118 19 1 9.6069 3.5159 0.9605 20 6 4.3274 4.3663 3.2904 21 6 3.8483 3.9634 4.6613 22 6 4.6317 3.6073 5.6952 23 6 3.7719 3.3117 6.7778 24 6 2.5145 3.5055 6.3410 25 8 2.5669 3.8992 5.0579 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 5.3123 1.9768 3.7863 36 1 5.3112 1.3738 2.1114 37 1 8.6645 0.4524 3.1514 38 1 3.6715 5.1387 2.8888 39 1 5.3441 4.7531 3.3599 40 1 5.7106 3.5568 5.6977 41 1 4.0678 2.9925 7.7662 42 1 1.6152 3.3666 6.9228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771935627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:13 Heat of formation + Delta-G solvation = 131.340116 kcal Electronic energy + Delta-G solvation = -25741.389553 eV Core-core repulsion = 22147.143716 eV Total energy + Delta-G solvation = -3594.245837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33378 -42.10622 -37.51775 -36.30103 -33.53223 -32.84430 -32.59512 -31.05410 -29.82357 -29.10544 -27.25479 -25.21240 -24.72780 -22.83455 -22.12149 -21.31427 -21.20713 -20.69590 -19.78830 -17.32963 -16.77201 -16.49144 -16.19441 -15.90165 -15.58173 -15.30056 -14.79399 -14.24892 -14.01219 -13.73598 -13.56295 -13.09904 -12.79705 -12.54726 -12.43849 -12.34661 -12.23822 -11.95251 -11.75363 -11.49967 -11.28442 -11.21193 -11.14124 -11.07468 -10.78609 -10.56872 -10.50504 -10.27305 -10.12465 -9.74025 -9.61483 -9.46159 -8.67076 -8.20636 -7.98335 -6.30339 -4.39890 1.70089 1.98587 2.40019 3.00454 3.02231 3.21160 3.25066 3.31260 3.36338 4.25369 4.32477 4.68233 4.76953 4.96967 4.99548 5.04246 5.08655 5.21750 5.40333 5.43895 5.44298 5.49800 5.55520 5.63842 5.70384 5.83418 5.99769 6.01731 6.09191 6.15298 6.19325 6.22377 6.25033 6.39815 6.45125 6.52787 6.76973 6.91404 7.06541 7.17914 7.54838 7.60886 7.65793 7.85526 8.67406 9.18346 9.30047 10.76442 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.006692 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.077146 B = 4183.284216 C = 5854.691061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.132 4.132 4 C 0.129 3.871 5 N -0.379 5.379 6 N -0.108 5.108 7 N -0.041 5.041 8 N -0.367 5.367 9 C 0.468 3.532 10 N -0.464 5.464 11 C 0.189 3.811 12 C -0.567 4.567 13 H 0.071 0.929 14 C 0.075 3.925 15 N -0.885 5.885 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.150 3.850 21 C 0.005 3.995 22 C -0.187 4.187 23 C -0.214 4.214 24 C -0.053 4.053 25 O -0.175 6.175 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.068 -1.474 2.029 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.171 4.171 4 C 0.007 3.993 5 N -0.177 5.177 6 N -0.096 5.096 7 N -0.037 5.037 8 N -0.226 5.226 9 C 0.102 3.898 10 N -0.189 5.189 11 C 0.066 3.934 12 C -0.605 4.605 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.522 5.522 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.023 3.977 21 C -0.046 4.046 22 C -0.207 4.207 23 C -0.233 4.233 24 C -0.121 4.121 25 O -0.071 6.071 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.359 -0.942 0.950 12.431 hybrid contribution 1.591 -0.409 0.597 1.748 sum -10.767 -1.351 1.546 10.961 Atomic orbital electron populations 1.21739 0.95507 1.01594 1.01912 1.21429 0.96169 0.95592 1.02640 1.21975 0.93470 0.98181 1.03450 1.22001 0.94927 0.76825 1.05596 1.51172 1.48366 1.13955 1.04233 1.82362 1.22350 0.97885 1.06953 1.77724 1.09308 1.13238 1.03479 1.74862 1.24627 1.19970 1.03152 1.22964 0.90448 0.86969 0.89372 1.59382 1.47916 1.16554 0.95039 1.20163 0.84558 0.89674 0.99045 1.21668 0.91078 0.98799 1.48975 0.91116 1.24869 0.99395 0.94658 0.94028 1.69910 1.28754 1.08054 1.45469 0.86604 0.82691 0.79375 0.79285 1.19678 1.21051 1.20042 1.20386 1.02589 0.90299 0.84450 1.22164 0.80464 1.05256 0.96679 1.21753 1.01358 1.05025 0.92581 1.21811 0.92904 1.07759 1.00810 1.23882 0.99623 1.05247 0.83367 1.83996 1.29227 1.67241 1.26642 0.92818 0.92629 0.92596 0.91640 0.91239 0.90755 0.91229 0.88519 0.87301 0.92195 0.94185 0.92338 0.89598 0.87702 0.82893 0.83902 0.78718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.15 0.37 -0.98 16 2 C -0.12 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.13 -1.63 5.54 -26.73 -0.15 -1.78 16 4 C 0.13 1.93 6.47 -4.04 -0.03 1.91 16 5 N -0.38 -7.23 3.69 -61.86 -0.23 -7.46 16 6 N -0.11 -2.21 13.93 60.35 0.84 -1.37 16 7 N -0.04 -0.90 13.38 60.35 0.81 -0.09 16 8 N -0.37 -8.09 11.01 30.10 0.33 -7.76 16 9 C 0.47 9.70 5.89 -320.42 -1.89 7.82 16 10 N -0.46 -9.25 4.67 -177.59 -0.83 -10.08 16 11 C 0.19 4.29 4.85 -4.97 -0.02 4.26 16 12 C -0.57 -14.36 7.61 -34.44 -0.26 -14.63 16 13 H 0.07 1.86 6.34 -52.49 -0.33 1.52 16 14 C 0.08 1.97 5.46 -17.82 -0.10 1.87 16 15 N -0.88 -23.87 13.29 55.43 0.74 -23.13 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.15 2.79 4.84 -4.98 -0.02 2.77 16 21 C 0.00 0.09 6.29 -35.62 -0.22 -0.14 16 22 C -0.19 -3.22 9.82 -39.70 -0.39 -3.61 16 23 C -0.21 -3.08 10.91 -39.70 -0.43 -3.52 16 24 C -0.05 -0.71 12.09 29.42 0.36 -0.36 16 25 O -0.18 -2.87 10.65 5.71 0.06 -2.81 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.11 1.71 6.18 -51.93 -0.32 1.39 16 35 H 0.06 1.43 6.63 -51.93 -0.34 1.08 16 36 H 0.04 0.96 6.29 -51.93 -0.33 0.64 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.52 7.78 -51.93 -0.40 1.12 16 39 H 0.11 2.09 6.38 -51.93 -0.33 1.76 16 40 H 0.15 2.75 8.06 -52.48 -0.42 2.33 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -29.19 354.29 -6.76 -35.95 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.85 Total: 3.27 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.95 Total: -7.74 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 1.66 Total: -49.90 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.06 Total: -2.81 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.19 -6.76 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771935627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.289 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds