Wall clock time and date at job start Tue Mar 31 2020 08:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 C 1.53003 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46907 * 180.02562 * 4 3 2 6 6 N 1.40588 * 127.38085 * 272.74932 * 5 4 3 7 7 N 1.28910 * 106.81665 * 180.26701 * 6 5 4 8 8 N 1.28421 * 110.31338 * 359.77213 * 7 6 5 9 9 C 1.31471 * 110.51123 * 359.97438 * 8 7 6 10 10 N 1.38382 * 126.43826 * 179.97438 * 9 8 7 11 11 C 1.46899 * 110.99766 * 253.88842 * 10 9 8 12 12 C 1.50703 * 109.47199 * 59.98616 * 11 10 9 13 13 H 1.07999 * 119.99853 * 3.99815 * 12 11 10 14 14 C 1.37878 * 120.00182 * 183.99034 * 12 11 10 15 15 N 1.31517 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47270 * 60.00433 * 16 14 12 18 18 H 1.48503 * 109.47341 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47342 * 299.99980 * 16 14 12 20 20 C 1.46897 * 111.00047 * 17.84306 * 10 9 8 21 21 C 1.50704 * 109.46905 * 163.42776 * 20 10 9 22 22 C 1.34515 * 125.78785 * 95.01908 * 21 20 10 23 23 C 1.41381 * 106.84138 * 179.97438 * 22 21 20 24 24 C 1.34514 * 106.83821 * 359.97438 * 23 22 21 25 25 O 1.34297 * 125.78859 * 275.01259 * 21 20 10 26 26 H 1.09000 * 109.47727 * 59.99764 * 1 2 3 27 27 H 1.09006 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47153 * 299.99510 * 1 2 3 29 29 H 1.09004 * 109.47153 * 240.00489 * 2 1 3 30 30 H 1.08998 * 109.47260 * 120.00014 * 2 1 3 31 31 H 1.08999 * 109.46993 * 59.99842 * 3 2 1 32 32 H 1.09008 * 109.47076 * 300.00002 * 3 2 1 33 33 H 1.08992 * 109.47305 * 59.99870 * 4 3 2 34 34 H 1.08998 * 109.46860 * 299.99791 * 4 3 2 35 35 H 1.09001 * 109.47399 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47539 * 299.98931 * 11 10 9 37 37 H 0.96997 * 119.99639 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47006 * 43.43052 * 20 10 9 39 39 H 1.09005 * 109.47161 * 283.42913 * 20 10 9 40 40 H 1.08006 * 126.57837 * 359.97301 * 22 21 20 41 41 H 1.08000 * 126.57879 * 180.02562 * 23 22 21 42 42 H 1.08006 * 125.78842 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 7 4.2917 3.6470 -1.1155 7 7 4.7201 4.7755 -0.6630 8 7 4.7757 4.7493 0.6197 9 6 4.3786 3.5814 1.0743 10 7 4.3081 3.1968 2.4017 11 6 5.3910 2.2626 2.7373 12 6 6.7214 2.9285 2.4969 13 1 6.7598 3.9642 2.1933 14 6 7.8895 2.2155 2.6645 15 7 7.8427 0.9541 3.0338 16 14 9.5385 3.0406 2.3657 17 1 9.6881 4.1958 3.2868 18 1 10.6316 2.0660 2.6118 19 1 9.6069 3.5159 0.9605 20 6 4.3274 4.3663 3.2904 21 6 3.8483 3.9634 4.6613 22 6 4.6317 3.6073 5.6952 23 6 3.7719 3.3117 6.7778 24 6 2.5145 3.5055 6.3410 25 8 2.5669 3.8992 5.0579 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 5.3123 1.9768 3.7863 36 1 5.3112 1.3738 2.1114 37 1 8.6645 0.4524 3.1514 38 1 3.6715 5.1387 2.8888 39 1 5.3441 4.7531 3.3599 40 1 5.7106 3.5568 5.6977 41 1 4.0678 2.9925 7.7662 42 1 1.6152 3.3666 6.9228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771935627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:13 Heat of formation + Delta-G solvation = 114.985507 kcal Electronic energy + Delta-G solvation = -25742.098742 eV Core-core repulsion = 22147.143716 eV Total energy + Delta-G solvation = -3594.955026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.94232 -43.37322 -39.16379 -37.47570 -34.85484 -34.73753 -33.84914 -32.59359 -31.28784 -30.34521 -28.97548 -26.74849 -26.04410 -24.53779 -23.58341 -22.53662 -22.29419 -22.09376 -21.13873 -19.07665 -18.17867 -18.06623 -17.68781 -17.51455 -16.83258 -16.59514 -16.41308 -15.74867 -15.39937 -14.91349 -14.88481 -14.59536 -14.20636 -13.99214 -13.70575 -13.65308 -13.49868 -13.35826 -13.21135 -13.09580 -12.79203 -12.66826 -12.61162 -12.29359 -12.24200 -12.14842 -12.03820 -11.79496 -11.54444 -11.31988 -11.21861 -10.76116 -10.66987 -9.80695 -9.33320 -8.31863 -6.45488 0.06671 0.63598 1.02226 1.30872 1.32802 1.34883 1.42209 1.78951 2.14609 2.30477 2.78556 3.00882 3.30150 3.64615 3.72087 3.86858 3.99279 4.04817 4.12095 4.24177 4.30868 4.37625 4.46398 4.49568 4.60753 4.63823 4.76737 4.87004 4.88829 4.96718 5.01353 5.09743 5.15173 5.17542 5.22349 5.27944 5.31523 5.43752 5.45833 5.60506 5.70214 5.85865 5.98029 6.32360 6.66175 7.25757 7.52088 8.74042 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.006692 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.077146 B = 4183.284216 C = 5854.691061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.119 3.881 5 N -0.371 5.371 6 N -0.105 5.105 7 N -0.058 5.058 8 N -0.383 5.383 9 C 0.455 3.545 10 N -0.452 5.452 11 C 0.208 3.792 12 C -0.568 4.568 13 H 0.058 0.942 14 C 0.036 3.964 15 N -0.908 5.908 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.286 1.286 20 C 0.155 3.845 21 C -0.017 4.017 22 C -0.198 4.198 23 C -0.227 4.227 24 C -0.031 4.031 25 O -0.185 6.185 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.028 0.972 37 H 0.269 0.731 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.169 0.831 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 -2.220 2.666 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.158 4.158 4 C -0.002 4.002 5 N -0.170 5.170 6 N -0.092 5.092 7 N -0.054 5.054 8 N -0.242 5.242 9 C 0.089 3.911 10 N -0.177 5.177 11 C 0.084 3.916 12 C -0.607 4.607 13 H 0.076 0.924 14 C -0.166 4.166 15 N -0.546 5.546 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.212 1.212 20 C 0.029 3.971 21 C -0.067 4.067 22 C -0.219 4.219 23 C -0.246 4.246 24 C -0.099 4.099 25 O -0.081 6.081 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.154 0.846 41 H 0.186 0.814 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -13.754 -1.690 1.586 13.948 hybrid contribution 1.951 -0.204 0.427 2.008 sum -11.803 -1.894 2.013 12.122 Atomic orbital electron populations 1.21731 0.94472 1.02510 1.01892 1.21429 0.96981 0.93709 1.03280 1.21900 0.91176 0.99899 1.02841 1.22400 0.96810 0.74832 1.06113 1.51481 1.47244 1.14848 1.03396 1.82271 1.21739 0.97766 1.07448 1.77703 1.10337 1.13940 1.03465 1.74785 1.25018 1.20996 1.03426 1.23038 0.91054 0.87147 0.89833 1.59363 1.46516 1.16821 0.94986 1.19778 0.84333 0.89575 0.97955 1.21817 0.92375 0.98275 1.48238 0.92359 1.25444 1.01865 0.95167 0.94158 1.69971 1.29396 1.08803 1.46407 0.85861 0.80111 0.78932 0.78379 1.19035 1.20119 1.21248 1.20240 1.01793 0.89912 0.85192 1.21836 0.81314 1.07405 0.96190 1.21818 1.00944 1.05148 0.93944 1.22104 0.92804 1.08374 1.01276 1.24846 1.01060 1.01955 0.82007 1.83989 1.28300 1.67585 1.28247 0.92469 0.91257 0.93032 0.90325 0.91315 0.92027 0.91100 0.86660 0.88041 0.93260 0.95361 0.92192 0.88997 0.89620 0.84610 0.81388 0.73859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.12 -2.09 5.93 30.59 0.18 -1.91 16 3 C -0.12 -2.82 5.54 30.60 0.17 -2.65 16 4 C 0.12 3.49 6.47 86.38 0.56 4.05 16 5 N -0.37 -14.11 3.69 -349.63 -1.29 -15.40 16 6 N -0.10 -4.25 13.93 37.02 0.52 -3.74 16 7 N -0.06 -2.57 13.38 37.02 0.50 -2.07 16 8 N -0.38 -17.12 11.01 -58.70 -0.65 -17.77 16 9 C 0.46 19.09 5.89 260.65 1.54 20.62 16 10 N -0.45 -18.34 4.67 -715.78 -3.34 -21.68 16 11 C 0.21 9.62 4.85 85.56 0.41 10.04 16 12 C -0.57 -29.34 7.61 25.60 0.19 -29.15 16 13 H 0.06 3.14 6.34 -2.91 -0.02 3.12 16 14 C 0.04 1.89 5.46 84.65 0.46 2.35 16 15 N -0.91 -49.21 13.29 21.45 0.28 -48.92 16 16 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 C 0.16 5.93 4.84 85.56 0.41 6.35 16 21 C -0.02 -0.61 6.29 24.83 0.16 -0.45 16 22 C -0.20 -6.82 9.82 22.19 0.22 -6.61 16 23 C -0.23 -6.09 10.91 22.19 0.24 -5.85 16 24 C -0.03 -0.75 12.09 66.97 0.81 0.06 16 25 O -0.18 -5.78 10.65 -2.47 -0.03 -5.81 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.10 3.17 6.18 -2.39 -0.01 3.16 16 35 H 0.05 2.41 6.63 -2.39 -0.02 2.39 16 36 H 0.03 1.38 6.29 -2.39 -0.02 1.37 16 37 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.09 3.34 7.78 -2.39 -0.02 3.32 16 39 H 0.09 3.58 6.38 -2.38 -0.02 3.56 16 40 H 0.14 5.07 8.06 -2.91 -0.02 5.05 16 41 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.25 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -62.65 354.29 5.11 -57.53 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.03 Total: 17.49 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 6.07 Total: -4.77 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.98 Total: -109.58 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.03 Total: -5.81 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -62.65 5.11 -57.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771935627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.519 kcal (2) G-P(sol) polarization free energy of solvation -62.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds