Wall clock time and date at job start Tue Mar 31 2020 08:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47542 * 2 1 4 4 C 1.53005 * 109.46770 * 120.00481 * 2 1 3 5 5 N 1.46498 * 109.46719 * 174.99575 * 4 2 1 6 6 N 1.40586 * 127.38700 * 272.57891 * 5 4 2 7 7 N 1.28908 * 106.82054 * 180.26864 * 6 5 4 8 8 N 1.28426 * 110.31278 * 359.77033 * 7 6 5 9 9 C 1.31475 * 110.50953 * 359.97438 * 8 7 6 10 10 N 1.38377 * 126.43500 * 179.97438 * 9 8 7 11 11 C 1.46902 * 111.00149 * 254.25424 * 10 9 8 12 12 C 1.50700 * 109.46995 * 61.17685 * 11 10 9 13 13 H 1.07997 * 119.99978 * 4.16360 * 12 11 10 14 14 C 1.37881 * 119.99831 * 184.15903 * 12 11 10 15 15 N 1.31513 * 119.99820 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99851 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47051 * 90.00111 * 16 14 12 18 18 H 1.48499 * 109.47084 * 210.00181 * 16 14 12 19 19 H 1.48499 * 109.47269 * 330.00091 * 16 14 12 20 20 C 1.46895 * 111.00364 * 18.21363 * 10 9 8 21 21 C 1.50699 * 109.47259 * 164.05333 * 20 10 9 22 22 C 1.34511 * 125.78845 * 95.66956 * 21 20 10 23 23 C 1.41383 * 106.84345 * 179.97438 * 22 21 20 24 24 C 1.34518 * 106.83845 * 359.97438 * 23 22 21 25 25 O 1.34303 * 125.79016 * 275.66518 * 21 20 10 26 26 H 1.08996 * 109.47039 * 299.99938 * 1 2 3 27 27 H 1.09009 * 109.47157 * 59.99772 * 1 2 3 28 28 H 1.09004 * 109.47699 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47013 * 239.99909 * 2 1 3 30 30 H 1.09008 * 109.46633 * 60.00244 * 3 2 1 31 31 H 1.08993 * 109.47413 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47589 * 300.00429 * 3 2 1 33 33 H 1.08999 * 109.46825 * 55.00041 * 4 2 1 34 34 H 1.08997 * 109.47155 * 294.99366 * 4 2 1 35 35 H 1.09002 * 109.47109 * 181.18115 * 11 10 9 36 36 H 1.09008 * 109.46932 * 301.18120 * 11 10 9 37 37 H 0.96998 * 119.99818 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47210 * 44.04785 * 20 10 9 39 39 H 1.09007 * 109.46765 * 284.05041 * 20 10 9 40 40 H 1.08001 * 126.58359 * 359.97177 * 22 21 20 41 41 H 1.07997 * 126.58536 * 180.02562 * 23 22 21 42 42 H 1.07994 * 125.79212 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.4999 -0.8266 1.1905 6 7 4.2588 -1.8429 0.5842 7 7 5.4988 -1.5454 0.7727 8 7 5.5988 -0.4464 1.4296 9 6 4.4070 0.0351 1.7059 10 7 4.1320 1.2005 2.3995 11 6 3.6519 0.9050 3.7560 12 6 4.7189 0.1594 4.5152 13 1 5.6838 -0.0130 4.0617 14 6 4.4634 -0.3027 5.7889 15 7 3.2883 -0.0931 6.3410 16 14 5.7863 -1.2263 6.7303 17 1 6.6022 -0.2624 7.5116 18 1 5.1490 -2.1984 7.6544 19 1 6.6594 -1.9523 5.7733 20 6 5.3075 2.0806 2.4372 21 6 4.8824 3.4696 2.8385 22 6 4.9194 3.9742 4.0848 23 6 4.4339 5.2997 4.0047 24 6 4.1298 5.5259 2.7140 25 8 4.4026 4.4136 2.0124 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6052 -1.7199 1.2950 34 1 1.7516 -0.1585 2.1370 35 1 3.4234 1.8377 4.2718 36 1 2.7522 0.2923 3.6976 37 1 3.1087 -0.4178 7.2372 38 1 5.7691 2.1128 1.4502 39 1 6.0256 1.6968 3.1619 40 1 5.2553 3.4647 4.9759 41 1 4.3282 5.9970 4.8225 42 1 3.7324 6.4454 2.3105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771937543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:16 Heat of formation + Delta-G solvation = 136.354237 kcal Electronic energy + Delta-G solvation = -26328.969626 eV Core-core repulsion = 22734.941217 eV Total energy + Delta-G solvation = -3594.028408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.34861 -42.09971 -37.58019 -36.69472 -33.00066 -32.83715 -32.57356 -31.04865 -29.69804 -27.56990 -27.08223 -26.74141 -25.16977 -23.12458 -22.38078 -21.30341 -20.84934 -20.15203 -19.77593 -17.37834 -16.79407 -16.53884 -16.22128 -16.00741 -15.28973 -14.98851 -14.74601 -14.22984 -13.94035 -13.73253 -13.37193 -12.97334 -12.81664 -12.42905 -12.37196 -12.25847 -12.21224 -12.01465 -11.71459 -11.44379 -11.34947 -11.21312 -11.09493 -10.99040 -10.85118 -10.60026 -10.45261 -10.26123 -10.11980 -9.68866 -9.59305 -9.44830 -8.67037 -8.19492 -7.96612 -6.29944 -4.39235 1.71055 1.99649 2.41363 3.01334 3.03228 3.18435 3.26110 3.33730 3.37158 4.25817 4.33607 4.65454 4.76770 5.02727 5.04854 5.08317 5.09515 5.30407 5.41745 5.44583 5.47365 5.63641 5.66107 5.74408 5.81332 5.93995 6.04866 6.09563 6.14469 6.16089 6.20132 6.24935 6.40880 6.46143 6.48756 6.54527 6.78230 6.92293 7.07588 7.18477 7.55908 7.62182 7.66517 7.86150 8.68276 9.19367 9.30673 10.76801 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.007725 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.885039 B = 3623.925134 C = 5380.724941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.132 3.868 5 N -0.377 5.377 6 N -0.109 5.109 7 N -0.042 5.042 8 N -0.368 5.368 9 C 0.469 3.531 10 N -0.461 5.461 11 C 0.189 3.811 12 C -0.565 4.565 13 H 0.071 0.929 14 C 0.075 3.925 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.149 3.851 21 C 0.006 3.994 22 C -0.187 4.187 23 C -0.214 4.214 24 C -0.053 4.053 25 O -0.174 6.174 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.266 0.734 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 7.451 -8.159 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.010 3.990 5 N -0.175 5.175 6 N -0.096 5.096 7 N -0.038 5.038 8 N -0.227 5.227 9 C 0.103 3.897 10 N -0.186 5.186 11 C 0.066 3.934 12 C -0.604 4.604 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.522 5.522 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.195 1.195 20 C 0.022 3.978 21 C -0.045 4.045 22 C -0.207 4.207 23 C -0.233 4.233 24 C -0.121 4.121 25 O -0.070 6.070 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.171 0.829 41 H 0.160 0.840 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.411 6.681 -9.081 12.106 hybrid contribution 0.217 -0.249 1.742 1.773 sum -4.194 6.432 -7.339 10.622 Atomic orbital electron populations 1.21755 0.93707 1.02066 1.02505 1.21494 0.96477 0.97511 0.97362 1.21807 1.01616 0.94587 1.01955 1.22091 0.73254 1.03114 1.00573 1.51141 1.08677 1.17657 1.40047 1.82361 0.98006 1.09357 1.19886 1.77729 1.10608 1.06834 1.08624 1.74872 1.19804 1.07262 1.20718 1.22939 0.84671 0.89182 0.92864 1.59435 1.31717 1.06974 1.20445 1.20150 0.96113 0.98654 0.78496 1.21700 1.00243 1.37485 1.00951 0.91061 1.24870 0.95542 0.95295 0.97284 1.69918 1.21311 1.45317 1.15617 0.86567 0.81835 0.79897 0.79840 1.20162 1.21040 1.19513 1.20386 0.90573 0.83243 1.03571 1.22146 1.02548 0.90918 0.88872 1.21746 1.05841 0.95172 0.97938 1.21809 1.06512 0.97832 0.97147 1.23870 1.06185 0.90570 0.91511 1.83997 1.63823 1.20555 1.38650 0.91959 0.92072 0.92392 0.90663 0.91583 0.92554 0.92981 0.88547 0.87271 0.92255 0.94253 0.92428 0.89704 0.87733 0.82928 0.83954 0.78765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.11 -1.35 3.13 -90.62 -0.28 -1.64 16 3 C -0.14 -1.90 8.72 37.16 0.32 -1.58 16 4 C 0.13 1.98 5.87 -4.04 -0.02 1.96 16 5 N -0.38 -7.11 3.45 -61.86 -0.21 -7.32 16 6 N -0.11 -2.21 13.93 60.35 0.84 -1.37 16 7 N -0.04 -0.91 13.38 60.35 0.81 -0.10 16 8 N -0.37 -8.05 11.07 30.10 0.33 -7.71 16 9 C 0.47 9.55 4.57 -320.41 -1.46 8.09 16 10 N -0.46 -8.96 4.15 -177.59 -0.74 -9.70 16 11 C 0.19 4.25 4.83 -4.98 -0.02 4.22 16 12 C -0.57 -14.25 7.63 -34.44 -0.26 -14.51 16 13 H 0.07 1.86 6.32 -52.49 -0.33 1.53 16 14 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 15 N -0.88 -23.82 13.29 55.43 0.74 -23.09 16 16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.15 2.74 4.83 -4.98 -0.02 2.72 16 21 C 0.01 0.10 6.26 -35.63 -0.22 -0.13 16 22 C -0.19 -3.20 9.87 -39.70 -0.39 -3.59 16 23 C -0.21 -3.07 10.91 -39.70 -0.43 -3.51 16 24 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 25 O -0.17 -2.81 10.65 5.70 0.06 -2.75 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 31 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.11 1.72 6.23 -51.93 -0.32 1.40 16 35 H 0.06 1.40 6.68 -51.93 -0.35 1.06 16 36 H 0.04 0.94 6.33 -51.92 -0.33 0.61 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.08 1.49 7.81 -51.93 -0.41 1.08 16 39 H 0.10 2.07 6.29 -51.93 -0.33 1.75 16 40 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 41 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -28.91 349.66 -5.89 -34.79 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.76 Total: 3.63 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.21 Total: -7.50 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 1.77 Total: -49.29 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: 0.06 Total: -2.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.91 -5.89 -34.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771937543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.147 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds