Wall clock time and date at job start Tue Mar 31 2020 08:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47542 * 2 1 4 4 C 1.53005 * 109.46770 * 120.00481 * 2 1 3 5 5 N 1.46498 * 109.46719 * 174.99575 * 4 2 1 6 6 N 1.40586 * 127.38700 * 272.57891 * 5 4 2 7 7 N 1.28908 * 106.82054 * 180.26864 * 6 5 4 8 8 N 1.28426 * 110.31278 * 359.77033 * 7 6 5 9 9 C 1.31475 * 110.50953 * 359.97438 * 8 7 6 10 10 N 1.38377 * 126.43500 * 179.97438 * 9 8 7 11 11 C 1.46902 * 111.00149 * 254.25424 * 10 9 8 12 12 C 1.50700 * 109.46995 * 61.17685 * 11 10 9 13 13 H 1.07997 * 119.99978 * 4.16360 * 12 11 10 14 14 C 1.37881 * 119.99831 * 184.15903 * 12 11 10 15 15 N 1.31513 * 119.99820 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99851 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47051 * 90.00111 * 16 14 12 18 18 H 1.48499 * 109.47084 * 210.00181 * 16 14 12 19 19 H 1.48499 * 109.47269 * 330.00091 * 16 14 12 20 20 C 1.46895 * 111.00364 * 18.21363 * 10 9 8 21 21 C 1.50699 * 109.47259 * 164.05333 * 20 10 9 22 22 C 1.34511 * 125.78845 * 95.66956 * 21 20 10 23 23 C 1.41383 * 106.84345 * 179.97438 * 22 21 20 24 24 C 1.34518 * 106.83845 * 359.97438 * 23 22 21 25 25 O 1.34303 * 125.79016 * 275.66518 * 21 20 10 26 26 H 1.08996 * 109.47039 * 299.99938 * 1 2 3 27 27 H 1.09009 * 109.47157 * 59.99772 * 1 2 3 28 28 H 1.09004 * 109.47699 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47013 * 239.99909 * 2 1 3 30 30 H 1.09008 * 109.46633 * 60.00244 * 3 2 1 31 31 H 1.08993 * 109.47413 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47589 * 300.00429 * 3 2 1 33 33 H 1.08999 * 109.46825 * 55.00041 * 4 2 1 34 34 H 1.08997 * 109.47155 * 294.99366 * 4 2 1 35 35 H 1.09002 * 109.47109 * 181.18115 * 11 10 9 36 36 H 1.09008 * 109.46932 * 301.18120 * 11 10 9 37 37 H 0.96998 * 119.99818 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47210 * 44.04785 * 20 10 9 39 39 H 1.09007 * 109.46765 * 284.05041 * 20 10 9 40 40 H 1.08001 * 126.58359 * 359.97177 * 22 21 20 41 41 H 1.07997 * 126.58536 * 180.02562 * 23 22 21 42 42 H 1.07994 * 125.79212 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.4999 -0.8266 1.1905 6 7 4.2588 -1.8429 0.5842 7 7 5.4988 -1.5454 0.7727 8 7 5.5988 -0.4464 1.4296 9 6 4.4070 0.0351 1.7059 10 7 4.1320 1.2005 2.3995 11 6 3.6519 0.9050 3.7560 12 6 4.7189 0.1594 4.5152 13 1 5.6838 -0.0130 4.0617 14 6 4.4634 -0.3027 5.7889 15 7 3.2883 -0.0931 6.3410 16 14 5.7863 -1.2263 6.7303 17 1 6.6022 -0.2624 7.5116 18 1 5.1490 -2.1984 7.6544 19 1 6.6594 -1.9523 5.7733 20 6 5.3075 2.0806 2.4372 21 6 4.8824 3.4696 2.8385 22 6 4.9194 3.9742 4.0848 23 6 4.4339 5.2997 4.0047 24 6 4.1298 5.5259 2.7140 25 8 4.4026 4.4136 2.0124 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6052 -1.7199 1.2950 34 1 1.7516 -0.1585 2.1370 35 1 3.4234 1.8377 4.2718 36 1 2.7522 0.2923 3.6976 37 1 3.1087 -0.4178 7.2372 38 1 5.7691 2.1128 1.4502 39 1 6.0256 1.6968 3.1619 40 1 5.2553 3.4647 4.9759 41 1 4.3282 5.9970 4.8225 42 1 3.7324 6.4454 2.3105 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771937543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:15 Heat of formation + Delta-G solvation = 119.531836 kcal Electronic energy + Delta-G solvation = -26329.699100 eV Core-core repulsion = 22734.941217 eV Total energy + Delta-G solvation = -3594.757883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.94484 -43.35638 -39.18644 -37.91516 -34.82569 -34.36289 -33.82647 -32.57714 -31.21169 -29.23157 -28.20271 -27.97570 -26.73605 -24.80016 -23.99731 -22.52357 -22.37207 -21.28308 -21.11605 -19.09538 -18.22780 -18.05106 -17.71887 -17.59125 -16.82530 -16.43409 -16.05451 -15.69279 -15.38082 -15.04788 -14.83145 -14.41562 -14.26663 -13.98909 -13.65289 -13.50229 -13.38904 -13.30500 -13.09778 -12.99936 -12.91897 -12.67589 -12.59088 -12.53029 -12.25552 -12.21305 -11.96804 -11.79349 -11.72315 -11.29079 -11.13388 -10.74900 -10.65959 -9.77354 -9.31559 -8.31383 -6.44681 0.09286 0.65765 1.04331 1.30417 1.33394 1.34428 1.43937 1.80215 2.15994 2.30641 2.80475 3.01225 3.31441 3.63240 3.69272 3.88253 3.97233 4.04628 4.11307 4.25328 4.34091 4.39434 4.48246 4.64253 4.65179 4.67285 4.80511 4.83174 4.93161 5.02173 5.03283 5.09848 5.14028 5.16528 5.17519 5.29186 5.39839 5.41089 5.48118 5.61517 5.71225 5.87661 6.00262 6.33898 6.67375 7.26492 7.54322 8.74467 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.007725 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.885039 B = 3623.925134 C = 5380.724941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.121 3.879 5 N -0.368 5.368 6 N -0.106 5.106 7 N -0.060 5.060 8 N -0.386 5.386 9 C 0.459 3.541 10 N -0.445 5.445 11 C 0.209 3.791 12 C -0.567 4.567 13 H 0.058 0.942 14 C 0.035 3.965 15 N -0.907 5.907 16 Si 0.940 3.060 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.283 1.283 20 C 0.155 3.845 21 C -0.015 4.015 22 C -0.199 4.199 23 C -0.227 4.227 24 C -0.031 4.031 25 O -0.183 6.183 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.268 0.732 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.167 0.833 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 8.663 -8.862 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.195 4.195 4 C 0.000 4.000 5 N -0.167 5.167 6 N -0.094 5.094 7 N -0.056 5.056 8 N -0.245 5.245 9 C 0.093 3.907 10 N -0.170 5.170 11 C 0.085 3.915 12 C -0.605 4.605 13 H 0.076 0.924 14 C -0.167 4.167 15 N -0.546 5.546 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.209 1.209 20 C 0.028 3.972 21 C -0.065 4.065 22 C -0.219 4.219 23 C -0.246 4.246 24 C -0.099 4.099 25 O -0.079 6.079 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.153 0.847 41 H 0.185 0.815 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.731 7.894 -9.789 13.820 hybrid contribution 0.584 -0.561 1.919 2.083 sum -5.147 7.333 -7.869 11.924 Atomic orbital electron populations 1.21731 0.91080 1.03216 1.03368 1.21462 0.98412 0.96354 0.95621 1.21756 0.99713 0.95426 1.02576 1.22512 0.71164 1.04538 1.01779 1.51421 1.09848 1.16608 1.38801 1.82264 0.97819 1.09618 1.19670 1.77705 1.11247 1.07116 1.09505 1.74791 1.21003 1.07600 1.21120 1.22986 0.84775 0.89616 0.93312 1.59405 1.32256 1.06596 1.18705 1.19749 0.94865 0.97295 0.79621 1.21848 1.00267 1.37265 1.01153 0.92377 1.25441 0.97002 0.96132 0.98117 1.69977 1.22331 1.46273 1.15974 0.85818 0.79876 0.79021 0.78652 1.19105 1.20527 1.20888 1.20233 0.89803 0.83952 1.03208 1.21804 1.04608 0.90876 0.89218 1.21804 1.06097 0.96816 0.97219 1.22093 1.06878 0.96928 0.98715 1.24822 1.03399 0.90630 0.91006 1.83992 1.63890 1.21152 1.38870 0.91879 0.90416 0.91159 0.90769 0.92314 0.95360 0.90948 0.86768 0.88071 0.93354 0.95519 0.92263 0.89169 0.89757 0.84725 0.81515 0.73930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 2 C -0.10 -2.30 3.13 -10.79 -0.03 -2.33 16 3 C -0.14 -3.50 8.72 71.98 0.63 -2.88 16 4 C 0.12 3.53 5.87 86.38 0.51 4.04 16 5 N -0.37 -13.88 3.45 -349.62 -1.21 -15.09 16 6 N -0.11 -4.30 13.93 37.02 0.52 -3.79 16 7 N -0.06 -2.63 13.38 37.02 0.50 -2.13 16 8 N -0.39 -17.26 11.07 -58.70 -0.65 -17.91 16 9 C 0.46 19.01 4.57 260.65 1.19 20.20 16 10 N -0.45 -17.70 4.15 -715.78 -2.97 -20.67 16 11 C 0.21 9.61 4.83 85.56 0.41 10.03 16 12 C -0.57 -29.21 7.63 25.60 0.20 -29.01 16 13 H 0.06 3.13 6.32 -2.91 -0.02 3.11 16 14 C 0.04 1.86 5.46 84.66 0.46 2.32 16 15 N -0.91 -49.18 13.29 21.45 0.28 -48.90 16 16 Si 0.94 43.21 29.54 68.60 2.03 45.23 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 20 C 0.15 5.87 4.83 85.56 0.41 6.29 16 21 C -0.01 -0.52 6.26 24.83 0.16 -0.36 16 22 C -0.20 -6.85 9.87 22.19 0.22 -6.63 16 23 C -0.23 -6.10 10.91 22.19 0.24 -5.86 16 24 C -0.03 -0.74 12.09 66.97 0.81 0.07 16 25 O -0.18 -5.64 10.65 -2.51 -0.03 -5.67 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.03 0.87 6.40 -2.39 -0.02 0.85 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.10 3.17 6.23 -2.39 -0.01 3.16 16 35 H 0.05 2.35 6.68 -2.39 -0.02 2.33 16 36 H 0.03 1.30 6.33 -2.38 -0.02 1.29 16 37 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.09 3.27 7.81 -2.39 -0.02 3.25 16 39 H 0.08 3.52 6.29 -2.38 -0.01 3.51 16 40 H 0.13 5.05 8.06 -2.91 -0.02 5.02 16 41 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.24 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -62.67 349.66 5.36 -57.31 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.03 Total: 17.35 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 5.86 Total: -5.74 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -3.53 Total: -108.49 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.03 Total: -5.67 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -62.67 5.36 -57.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771937543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.837 kcal (2) G-P(sol) polarization free energy of solvation -62.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds