Wall clock time and date at job start Tue Mar 31 2020 09:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46845 * 269.99493 * 3 2 1 5 5 H 1.48492 * 109.47361 * 29.99778 * 3 2 1 6 6 H 1.48502 * 109.47002 * 149.99885 * 3 2 1 7 7 C 1.37878 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52316 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.27512 * 182.38097 * 10 9 7 12 12 N 1.46844 * 109.52937 * 59.18217 * 11 10 9 13 13 C 1.46895 * 111.00431 * 174.15774 * 12 11 10 14 14 C 1.52996 * 109.47077 * 294.03480 * 13 12 11 15 15 H 1.09000 * 109.47424 * 59.74126 * 14 13 12 16 16 O 1.42901 * 109.46962 * 299.73973 * 14 13 12 17 17 C 1.53008 * 109.47189 * 179.74512 * 14 13 12 18 18 O 1.42893 * 109.47186 * 184.99997 * 17 14 13 19 19 C 1.35901 * 117.00034 * 179.97438 * 18 17 14 20 20 C 1.38730 * 120.05265 * 359.72559 * 19 18 17 21 21 C 1.38152 * 119.93933 * 179.74579 * 20 19 18 22 22 C 1.38263 * 120.05894 * 0.50568 * 21 20 19 23 23 C 1.38272 * 120.10973 * 359.76544 * 22 21 20 24 24 C 1.38142 * 120.05432 * 359.97438 * 23 22 21 25 25 C 1.46852 * 111.19533 * 298.25888 * 12 11 10 26 26 C 1.53033 * 109.52637 * 61.73656 * 25 12 11 27 27 H 0.97004 * 120.00436 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.52905 * 300.13231 * 9 7 2 29 29 H 1.08996 * 109.50059 * 62.43961 * 10 9 7 30 30 H 1.08997 * 109.53559 * 302.33776 * 10 9 7 31 31 H 1.09003 * 109.46504 * 299.16325 * 11 10 9 32 32 H 1.09007 * 109.45033 * 179.19460 * 11 10 9 33 33 H 1.09005 * 109.47152 * 54.03278 * 13 12 11 34 34 H 1.09000 * 109.47308 * 174.03012 * 13 12 11 35 35 H 0.96701 * 113.99827 * 300.00029 * 16 14 13 36 36 H 1.09004 * 109.46341 * 304.99512 * 17 14 13 37 37 H 1.08995 * 109.47243 * 64.99045 * 17 14 13 38 38 H 1.07994 * 120.03100 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.97215 * 180.27432 * 21 20 19 40 40 H 1.07996 * 119.94695 * 179.74661 * 22 21 20 41 41 H 1.08000 * 119.97086 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.02937 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.46121 * 181.75309 * 25 12 11 44 44 H 1.08997 * 109.46014 * 301.72051 * 25 12 11 45 45 H 1.08999 * 109.50337 * 180.87961 * 26 25 12 46 46 H 1.09008 * 109.53610 * 60.77902 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2449 -3.6639 0.0027 11 6 1.4749 -4.9852 -0.0561 12 7 0.6532 -5.0207 -1.2725 13 6 0.0068 -6.3300 -1.4333 14 6 1.0735 -7.3983 -1.6813 15 1 1.7603 -7.4293 -0.8354 16 8 1.7978 -7.0809 -2.8715 17 6 0.4008 -8.7631 -1.8424 18 8 1.4013 -9.7767 -1.9576 19 6 0.9689 -11.0563 -2.1075 20 6 -0.3906 -11.3312 -2.1373 21 6 -0.8276 -12.6323 -2.2950 22 6 0.0885 -13.6611 -2.4128 23 6 1.4440 -13.3904 -2.3778 24 6 1.8861 -12.0905 -2.2256 25 6 -0.3406 -3.9395 -1.2738 26 6 0.3751 -2.5870 -1.2513 27 1 -0.4851 0.8400 -0.0004 28 1 0.6225 -2.5563 0.8904 29 1 2.8427 -3.6313 0.9136 30 1 2.8995 -3.5853 -0.8652 31 1 0.8313 -5.0698 0.8195 32 1 2.1804 -5.8161 -0.0699 33 1 -0.5487 -6.5745 -0.5279 34 1 -0.6773 -6.2958 -2.2812 35 1 1.2485 -7.0363 -3.6661 36 1 -0.2230 -8.9656 -0.9717 37 1 -0.2180 -8.7595 -2.7396 38 1 -1.1066 -10.5285 -2.0409 39 1 -1.8859 -12.8464 -2.3227 40 1 -0.2552 -14.6780 -2.5319 41 1 2.1576 -14.1958 -2.4695 42 1 2.9449 -11.8795 -2.1979 43 1 -0.9539 -4.0109 -2.1720 44 1 -0.9756 -4.0290 -0.3925 45 1 -0.3629 -1.7849 -1.2364 46 1 0.9998 -2.4903 -2.1393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541951663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:55 Heat of formation + Delta-G solvation = -66.369878 kcal Electronic energy + Delta-G solvation = -24611.047115 eV Core-core repulsion = 21079.475521 eV Total energy + Delta-G solvation = -3531.571593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40913 -38.82563 -37.71256 -36.44954 -33.80060 -31.73960 -31.32235 -30.61083 -29.91324 -29.29341 -26.54887 -24.63560 -23.11500 -22.56144 -22.16740 -21.46741 -20.84457 -18.59207 -18.48618 -17.03233 -16.67232 -16.32434 -16.17624 -15.52529 -15.07644 -14.96647 -14.85865 -14.44977 -14.12971 -13.79547 -13.68001 -13.29743 -13.10690 -12.78644 -12.66710 -12.32675 -12.31545 -11.89329 -11.65964 -11.35857 -11.28146 -11.23784 -10.92528 -10.81840 -10.76534 -10.46475 -10.19275 -10.08353 -9.87302 -9.41785 -9.31305 -8.91839 -8.70016 -8.47430 -8.27605 -7.76680 -5.95584 -4.00372 1.03180 1.16181 2.83932 3.33176 3.39603 3.43345 3.49888 4.18873 4.39746 4.47194 4.51646 4.59436 4.70532 4.81391 4.82630 4.94987 5.06609 5.09308 5.20838 5.23144 5.34729 5.37954 5.57739 5.70085 5.72848 5.85269 5.94223 6.02220 6.07918 6.10397 6.17557 6.22817 6.34693 6.47787 6.57604 6.65112 6.88509 7.09778 7.16072 7.17509 7.42723 7.60774 7.63300 7.76830 7.83685 8.07005 8.16857 8.50845 9.03301 9.63871 11.10706 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.047603 B = 0.002226 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.056485 B =12577.608396 C =12856.997048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.058 3.942 12 N -0.523 5.523 13 C 0.026 3.974 14 C 0.116 3.884 15 H 0.108 0.892 16 O -0.534 6.534 17 C 0.028 3.972 18 O -0.302 6.302 19 C 0.132 3.868 20 C -0.212 4.212 21 C -0.081 4.081 22 C -0.164 4.164 23 C -0.081 4.081 24 C -0.154 4.154 25 C 0.058 3.942 26 C -0.104 4.104 27 H 0.259 0.741 28 H 0.019 0.981 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.370 0.630 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.054 0.946 44 H 0.022 0.978 45 H 0.093 0.907 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -24.531 -4.948 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.247 5.247 13 C -0.103 4.103 14 C 0.055 3.945 15 H 0.126 0.874 16 O -0.338 6.338 17 C -0.048 4.048 18 O -0.215 6.215 19 C 0.087 3.913 20 C -0.231 4.231 21 C -0.099 4.099 22 C -0.182 4.182 23 C -0.099 4.099 24 C -0.172 4.172 25 C -0.069 4.069 26 C -0.142 4.142 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.216 0.784 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.111 0.889 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.366 -24.210 -4.906 24.815 hybrid contribution -1.031 0.736 0.369 1.320 sum -3.398 -23.474 -4.536 24.149 Atomic orbital electron populations 1.69874 1.05865 1.26261 1.51287 1.24974 0.94855 0.99028 0.95255 0.86622 0.79877 0.83600 0.78060 1.20729 1.21377 1.19990 1.21218 0.92927 0.90643 1.49865 0.92716 1.18688 0.92713 0.91827 0.93867 1.21664 0.98722 0.93541 1.00425 1.22192 0.95874 0.99673 0.89233 1.61884 1.23307 1.00845 1.38714 1.22635 0.95459 0.91275 1.00960 1.21929 0.94365 0.88014 0.90165 0.87413 1.86684 1.37504 1.92837 1.16750 1.23671 0.91100 0.88276 1.01785 1.86167 1.35294 1.12955 1.87059 1.19132 0.92523 0.84515 0.95155 1.21300 0.94483 0.98386 1.08930 1.20959 0.99697 0.92094 0.97145 1.21060 0.93266 0.99249 1.04642 1.20984 0.95876 0.95638 0.97439 1.20501 0.99560 0.91043 1.06118 1.22294 0.92934 0.93117 0.98523 1.21663 1.00217 0.92772 0.99553 0.93150 0.96245 0.93213 0.92283 0.95963 0.92193 0.94440 0.90689 0.78395 0.91247 0.91616 0.85538 0.85888 0.86018 0.85416 0.85106 0.92713 0.96007 0.88929 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 11.37 55.43 0.63 -24.85 16 2 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 11 C 0.06 1.05 5.29 -3.84 -0.02 1.03 16 12 N -0.52 -9.05 4.53 -234.67 -1.06 -10.11 16 13 C 0.03 0.33 4.62 -3.83 -0.02 0.32 16 14 C 0.12 1.41 3.13 -26.73 -0.08 1.32 16 15 H 0.11 1.46 6.42 -51.93 -0.33 1.12 16 16 O -0.53 -7.37 13.17 -40.08 -0.53 -7.90 16 17 C 0.03 0.28 4.37 37.16 0.16 0.44 16 18 O -0.30 -3.66 10.10 -24.28 -0.25 -3.91 16 19 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 20 C -0.21 -1.99 9.04 -39.43 -0.36 -2.35 16 21 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 22 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 23 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 24 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 25 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 26 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.99 6.22 -51.92 -0.32 0.67 16 33 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 35 H 0.37 3.80 9.05 45.56 0.41 4.21 16 36 H 0.07 0.60 7.65 -51.93 -0.40 0.21 16 37 H 0.07 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.42 6.18 -51.93 -0.32 2.09 16 46 H 0.04 1.10 8.14 -51.92 -0.42 0.67 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -30.95 365.97 -10.48 -41.43 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.71 Total: 2.85 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.05 Total: -19.47 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.43 Total: -34.96 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.77 Total: -11.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.95 -10.48 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.944 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds