Wall clock time and date at job start Tue Mar 31 2020 09:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99784 * 2 1 4 4 H 1.48504 * 109.46997 * 240.00204 * 3 2 1 5 5 H 1.48501 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46707 * 120.00149 * 3 2 1 7 7 C 1.37872 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99873 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.47417 * 300.00173 * 9 7 2 11 11 O 1.42908 * 109.46962 * 60.00205 * 9 7 2 12 12 C 1.53001 * 109.47070 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47093 * 184.76401 * 12 9 7 14 14 C 1.46896 * 111.00064 * 173.51911 * 13 12 9 15 15 C 1.50702 * 109.47378 * 195.77184 * 14 13 12 16 16 C 1.38236 * 119.99604 * 268.66209 * 15 14 13 17 17 C 1.38238 * 119.99869 * 179.76188 * 16 15 14 18 18 C 1.38239 * 119.99748 * 0.50973 * 17 16 15 19 19 C 1.38234 * 119.99774 * 359.74530 * 18 17 16 20 20 C 1.38230 * 120.00137 * 88.93599 * 15 14 13 21 21 C 1.46900 * 110.99904 * 297.47199 * 13 12 9 22 22 H 1.08993 * 109.47301 * 208.85055 * 21 13 12 23 23 C 1.53007 * 109.46982 * 88.85257 * 21 13 12 24 24 O 1.42906 * 109.46923 * 61.55447 * 23 21 13 25 25 C 1.52997 * 109.47279 * 328.85401 * 21 13 12 26 26 C 1.52998 * 117.49851 * 255.15283 * 25 21 13 27 27 C 1.52999 * 117.50061 * 186.49142 * 25 21 13 28 28 H 0.97005 * 120.00390 * 0.02562 * 1 2 3 29 29 H 0.96697 * 114.00149 * 59.99884 * 11 9 7 30 30 H 1.09004 * 109.47243 * 304.75966 * 12 9 7 31 31 H 1.08998 * 109.47122 * 64.76604 * 12 9 7 32 32 H 1.09006 * 109.47435 * 315.77332 * 14 13 12 33 33 H 1.09007 * 109.47347 * 75.76820 * 14 13 12 34 34 H 1.08001 * 120.00448 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.00134 * 180.22846 * 17 16 15 36 36 H 1.07997 * 119.99857 * 179.72002 * 18 17 16 37 37 H 1.08006 * 119.99432 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.99732 * 359.97438 * 20 15 14 39 39 H 1.09004 * 109.46958 * 181.55044 * 23 21 13 40 40 H 1.08992 * 109.47137 * 301.55496 * 23 21 13 41 41 H 0.96697 * 113.99360 * 179.97438 * 24 23 21 42 42 H 1.09004 * 115.55022 * 40.82357 * 25 21 13 43 43 H 1.08995 * 117.50164 * 359.97438 * 26 25 21 44 44 H 1.08994 * 117.49834 * 145.02367 * 26 25 21 45 45 H 1.08997 * 117.50037 * 214.97942 * 27 25 21 46 46 H 1.09004 * 117.49839 * 359.97419 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7466 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4290 -2.5745 -1.1671 12 6 2.2453 -3.6620 -0.0018 13 7 1.5143 -4.9311 -0.1169 14 6 2.4409 -6.0598 -0.2758 15 6 1.6842 -7.2650 -0.7717 16 6 1.1498 -8.1651 0.1313 17 6 0.4514 -9.2680 -0.3234 18 6 0.2966 -9.4765 -1.6812 19 6 0.8355 -8.5792 -2.5841 20 6 1.5294 -7.4735 -2.1293 21 6 0.6292 -5.1352 1.0376 22 1 0.5050 -6.2033 1.2159 23 6 -0.7351 -4.5039 0.7522 24 8 -1.3267 -5.1409 -0.3821 25 6 1.2455 -4.4798 2.2751 26 6 1.8831 -5.3998 3.3181 27 6 0.5493 -4.7110 3.6177 28 1 -0.4851 0.8401 -0.0004 29 1 0.9208 -2.5290 -1.9984 30 1 2.9261 -3.5571 -0.8466 31 1 2.8151 -3.6539 0.9273 32 1 3.2154 -5.7955 -0.9959 33 1 2.9016 -6.2899 0.6850 34 1 1.2742 -8.0043 1.1920 35 1 0.0308 -9.9693 0.3821 36 1 -0.2452 -10.3406 -2.0364 37 1 0.7148 -8.7424 -3.6449 38 1 1.9504 -6.7724 -2.8347 39 1 -1.3830 -4.6313 1.6194 40 1 -0.6077 -3.4411 0.5467 41 1 -2.1958 -4.7906 -0.6208 42 1 1.7103 -3.5078 2.1100 43 1 1.8632 -6.4719 3.1230 44 1 2.7671 -5.0328 3.8396 45 1 0.5564 -3.8913 4.3361 46 1 -0.3481 -5.3297 3.6194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809576708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:06 Heat of formation + Delta-G solvation = -23.909842 kcal Electronic energy + Delta-G solvation = -26739.117381 eV Core-core repulsion = 23209.386993 eV Total energy + Delta-G solvation = -3529.730388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.71724 -38.47918 -35.86445 -35.40287 -34.57540 -32.06241 -31.43894 -30.69315 -28.85494 -28.11223 -25.35864 -23.79283 -22.69984 -22.30171 -22.00164 -20.89155 -20.50258 -19.09423 -16.98183 -16.66722 -16.31414 -16.01955 -15.16247 -14.96585 -14.71792 -14.59841 -14.27533 -14.13657 -13.67097 -13.42765 -13.18283 -12.98770 -12.79761 -12.47771 -12.22886 -12.17192 -11.75545 -11.37434 -11.21366 -11.01924 -10.93414 -10.87110 -10.86729 -10.67386 -10.58129 -10.45558 -10.09780 -9.88390 -9.59710 -9.20054 -8.75685 -8.65503 -8.50378 -8.35924 -8.00930 -7.46312 -6.00961 -4.18131 1.59721 1.65340 3.27711 3.33486 3.35114 3.93061 4.02297 4.37204 4.64015 4.75718 5.02552 5.06057 5.13908 5.18810 5.26367 5.27554 5.31860 5.45380 5.53783 5.69062 5.72773 5.78908 5.83217 5.88652 5.98054 6.01110 6.12360 6.20742 6.24192 6.25572 6.29111 6.31019 6.32719 6.47830 6.63116 6.67453 6.71430 6.84120 6.91974 6.96320 7.24104 7.65784 7.74720 7.81477 7.90000 8.22411 8.48679 8.84896 9.48730 9.65768 11.02791 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.004617 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.592981 B = 6063.575965 C = 6612.257850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.083 3.917 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.231 3.769 10 H 0.066 0.934 11 O -0.547 6.547 12 C 0.020 3.980 13 N -0.497 5.497 14 C 0.087 3.913 15 C -0.055 4.055 16 C -0.114 4.114 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.093 4.093 21 C 0.123 3.877 22 H 0.073 0.927 23 C 0.076 3.924 24 O -0.554 6.554 25 C -0.187 4.187 26 C -0.182 4.182 27 C -0.175 4.175 28 H 0.260 0.740 29 H 0.342 0.658 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.020 0.980 40 H 0.093 0.907 41 H 0.365 0.635 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -15.013 1.660 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.614 4.614 8 H 0.070 0.930 9 C 0.173 3.827 10 H 0.083 0.917 11 O -0.349 6.349 12 C -0.107 4.107 13 N -0.219 5.219 14 C -0.041 4.041 15 C -0.056 4.056 16 C -0.133 4.133 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.140 4.140 20 C -0.111 4.111 21 C 0.014 3.986 22 H 0.091 0.909 23 C -0.002 4.002 24 O -0.357 6.357 25 C -0.206 4.206 26 C -0.219 4.219 27 C -0.212 4.212 28 H 0.070 0.930 29 H 0.185 0.815 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.038 0.962 40 H 0.111 0.889 41 H 0.209 0.791 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.913 -15.262 1.715 15.385 hybrid contribution 0.963 1.357 0.499 1.737 sum 1.876 -13.905 2.214 14.204 Atomic orbital electron populations 1.70045 1.05821 1.26435 1.47131 1.24967 0.94639 0.98860 0.93886 0.86792 0.79777 0.83470 0.78631 1.20189 1.21249 1.20315 1.21675 0.93107 0.91805 1.54840 0.92961 1.19495 0.87785 0.88230 0.87144 0.91712 1.86543 1.37318 1.96222 1.14791 1.23276 0.97898 0.90210 0.99329 1.62247 1.19453 1.00799 1.39381 1.21095 0.93892 0.89784 0.99324 1.19768 0.97589 0.94759 0.93464 1.20967 0.98638 0.94846 0.98845 1.20995 0.99626 0.97864 0.95617 1.21012 1.00656 0.99575 0.93430 1.21076 0.98533 0.95105 0.99251 1.20969 0.98403 0.96618 0.95154 1.21191 0.92505 0.98462 0.86472 0.90871 1.22581 0.91378 0.99744 0.86453 1.86468 1.36552 1.63018 1.49684 1.23361 1.04161 1.02428 0.90639 1.22937 0.96865 0.97982 1.04094 1.22841 0.95678 1.03205 0.99513 0.93010 0.81474 0.92067 0.94839 0.90569 0.94609 0.87017 0.86785 0.86790 0.86570 0.86212 0.96150 0.88882 0.79103 0.84942 0.89530 0.89097 0.88809 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.49 12.84 55.43 0.71 -23.78 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.58 -15.21 8.76 -34.44 -0.30 -15.51 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.23 5.49 1.50 -27.88 -0.04 5.45 16 10 H 0.07 1.66 4.34 -51.93 -0.23 1.44 16 11 O -0.55 -13.59 11.17 -35.23 -0.39 -13.98 16 12 C 0.02 0.40 4.04 -3.82 -0.02 0.39 16 13 N -0.50 -8.96 4.05 -228.08 -0.92 -9.88 16 14 C 0.09 1.35 5.08 -4.98 -0.03 1.33 16 15 C -0.06 -0.83 5.11 -104.62 -0.53 -1.37 16 16 C -0.11 -1.61 8.27 -39.58 -0.33 -1.93 16 17 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 18 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 19 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 20 C -0.09 -1.35 9.71 -39.59 -0.38 -1.74 16 21 C 0.12 2.14 1.89 -67.71 -0.13 2.01 16 22 H 0.07 1.24 4.85 -51.93 -0.25 0.99 16 23 C 0.08 1.46 5.95 37.16 0.22 1.68 16 24 O -0.55 -10.61 13.55 -35.23 -0.48 -11.09 16 25 C -0.19 -3.09 3.56 -90.62 -0.32 -3.41 16 26 C -0.18 -2.47 10.18 -26.69 -0.27 -2.74 16 27 C -0.17 -2.49 9.83 -26.69 -0.26 -2.75 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.34 8.01 9.04 45.56 0.41 8.42 16 30 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 31 H 0.03 0.66 5.90 -51.93 -0.31 0.35 16 32 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 33 H 0.04 0.53 7.99 -51.92 -0.41 0.12 16 34 H 0.11 1.46 7.25 -52.49 -0.38 1.08 16 35 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.02 0.36 7.70 -51.93 -0.40 -0.04 16 40 H 0.09 2.12 3.83 -51.93 -0.20 1.92 16 41 H 0.36 5.77 9.12 45.56 0.42 6.18 16 42 H 0.13 2.56 4.60 -51.93 -0.24 2.32 16 43 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.09 1.21 8.01 -51.93 -0.42 0.79 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -29.97 362.94 -9.64 -39.61 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -5.32 Total: 20.27 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -3.68 Total: -22.38 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.21 Total: -33.66 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.87 Total: -25.07 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.97 -9.64 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.700 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds