Wall clock time and date at job start Tue Mar 31 2020 09:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99784 * 2 1 4 4 H 1.48504 * 109.46997 * 240.00204 * 3 2 1 5 5 H 1.48501 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46707 * 120.00149 * 3 2 1 7 7 C 1.37872 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99873 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.47417 * 300.00173 * 9 7 2 11 11 O 1.42908 * 109.46962 * 60.00205 * 9 7 2 12 12 C 1.53001 * 109.47070 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47093 * 184.76401 * 12 9 7 14 14 C 1.46896 * 111.00064 * 173.51911 * 13 12 9 15 15 C 1.50702 * 109.47378 * 195.77184 * 14 13 12 16 16 C 1.38236 * 119.99604 * 268.66209 * 15 14 13 17 17 C 1.38238 * 119.99869 * 179.76188 * 16 15 14 18 18 C 1.38239 * 119.99748 * 0.50973 * 17 16 15 19 19 C 1.38234 * 119.99774 * 359.74530 * 18 17 16 20 20 C 1.38230 * 120.00137 * 88.93599 * 15 14 13 21 21 C 1.46900 * 110.99904 * 297.47199 * 13 12 9 22 22 H 1.08993 * 109.47301 * 208.85055 * 21 13 12 23 23 C 1.53007 * 109.46982 * 88.85257 * 21 13 12 24 24 O 1.42906 * 109.46923 * 61.55447 * 23 21 13 25 25 C 1.52997 * 109.47279 * 328.85401 * 21 13 12 26 26 C 1.52998 * 117.49851 * 255.15283 * 25 21 13 27 27 C 1.52999 * 117.50061 * 186.49142 * 25 21 13 28 28 H 0.97005 * 120.00390 * 0.02562 * 1 2 3 29 29 H 0.96697 * 114.00149 * 59.99884 * 11 9 7 30 30 H 1.09004 * 109.47243 * 304.75966 * 12 9 7 31 31 H 1.08998 * 109.47122 * 64.76604 * 12 9 7 32 32 H 1.09006 * 109.47435 * 315.77332 * 14 13 12 33 33 H 1.09007 * 109.47347 * 75.76820 * 14 13 12 34 34 H 1.08001 * 120.00448 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.00134 * 180.22846 * 17 16 15 36 36 H 1.07997 * 119.99857 * 179.72002 * 18 17 16 37 37 H 1.08006 * 119.99432 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.99732 * 359.97438 * 20 15 14 39 39 H 1.09004 * 109.46958 * 181.55044 * 23 21 13 40 40 H 1.08992 * 109.47137 * 301.55496 * 23 21 13 41 41 H 0.96697 * 113.99360 * 179.97438 * 24 23 21 42 42 H 1.09004 * 115.55022 * 40.82357 * 25 21 13 43 43 H 1.08995 * 117.50164 * 359.97438 * 26 25 21 44 44 H 1.08994 * 117.49834 * 145.02367 * 26 25 21 45 45 H 1.08997 * 117.50037 * 214.97942 * 27 25 21 46 46 H 1.09004 * 117.49839 * 359.97419 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7466 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4290 -2.5745 -1.1671 12 6 2.2453 -3.6620 -0.0018 13 7 1.5143 -4.9311 -0.1169 14 6 2.4409 -6.0598 -0.2758 15 6 1.6842 -7.2650 -0.7717 16 6 1.1498 -8.1651 0.1313 17 6 0.4514 -9.2680 -0.3234 18 6 0.2966 -9.4765 -1.6812 19 6 0.8355 -8.5792 -2.5841 20 6 1.5294 -7.4735 -2.1293 21 6 0.6292 -5.1352 1.0376 22 1 0.5050 -6.2033 1.2159 23 6 -0.7351 -4.5039 0.7522 24 8 -1.3267 -5.1409 -0.3821 25 6 1.2455 -4.4798 2.2751 26 6 1.8831 -5.3998 3.3181 27 6 0.5493 -4.7110 3.6177 28 1 -0.4851 0.8401 -0.0004 29 1 0.9208 -2.5290 -1.9984 30 1 2.9261 -3.5571 -0.8466 31 1 2.8151 -3.6539 0.9273 32 1 3.2154 -5.7955 -0.9959 33 1 2.9016 -6.2899 0.6850 34 1 1.2742 -8.0043 1.1920 35 1 0.0308 -9.9693 0.3821 36 1 -0.2452 -10.3406 -2.0364 37 1 0.7148 -8.7424 -3.6449 38 1 1.9504 -6.7724 -2.8347 39 1 -1.3830 -4.6313 1.6194 40 1 -0.6077 -3.4411 0.5467 41 1 -2.1958 -4.7906 -0.6208 42 1 1.7103 -3.5078 2.1100 43 1 1.8632 -6.4719 3.1230 44 1 2.7671 -5.0328 3.8396 45 1 0.5564 -3.8913 4.3361 46 1 -0.3481 -5.3297 3.6194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809576708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:05 Heat of formation + Delta-G solvation = -45.005531 kcal Electronic energy + Delta-G solvation = -26740.032159 eV Core-core repulsion = 23209.386993 eV Total energy + Delta-G solvation = -3530.645166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01048 -39.61206 -37.43220 -36.91836 -36.06740 -34.13217 -32.66705 -31.70034 -30.42219 -29.64926 -27.02337 -25.30790 -24.01024 -23.36107 -23.11855 -22.36527 -21.87220 -20.56990 -18.82128 -18.02365 -17.61242 -17.33210 -16.65352 -16.33935 -16.31984 -15.88916 -15.79575 -15.57986 -15.09965 -14.87837 -14.51423 -14.32052 -14.18052 -13.87218 -13.64737 -13.33269 -13.10960 -12.99488 -12.79278 -12.77204 -12.44722 -12.36504 -12.21340 -12.06009 -11.98877 -11.73472 -11.66845 -11.24168 -10.91652 -10.86630 -10.71912 -10.15899 -9.96994 -9.66968 -9.52310 -8.88054 -8.08358 -6.31875 0.56723 0.63589 1.40911 1.41525 1.49151 2.40368 2.76241 2.91283 3.17843 3.34320 3.46797 3.88980 3.95431 4.05922 4.07364 4.16931 4.25618 4.28794 4.36661 4.39237 4.48063 4.52428 4.60407 4.64325 4.68157 4.74262 4.74752 4.82704 4.87017 4.92576 5.00963 5.08412 5.21781 5.23195 5.25448 5.27351 5.37995 5.66302 5.68207 5.72065 5.85017 5.94796 6.12622 6.24191 6.34067 6.40246 6.80592 7.09908 7.41093 7.71486 8.94664 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.004617 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.592981 B = 6063.575965 C = 6612.257850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.034 3.966 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.589 4.589 8 H 0.052 0.948 9 C 0.238 3.762 10 H 0.046 0.954 11 O -0.558 6.558 12 C 0.038 3.962 13 N -0.506 5.506 14 C 0.090 3.910 15 C -0.073 4.073 16 C -0.125 4.125 17 C -0.127 4.127 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.113 4.113 21 C 0.131 3.869 22 H 0.084 0.916 23 C 0.080 3.920 24 O -0.565 6.565 25 C -0.211 4.211 26 C -0.158 4.158 27 C -0.169 4.169 28 H 0.259 0.741 29 H 0.344 0.656 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.034 0.966 40 H 0.053 0.947 41 H 0.376 0.624 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -16.836 2.251 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.169 4.169 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.628 4.628 8 H 0.070 0.930 9 C 0.181 3.819 10 H 0.064 0.936 11 O -0.361 6.361 12 C -0.090 4.090 13 N -0.228 5.228 14 C -0.038 4.038 15 C -0.073 4.073 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.132 4.132 21 C 0.023 3.977 22 H 0.102 0.898 23 C 0.002 3.998 24 O -0.370 6.370 25 C -0.230 4.230 26 C -0.195 4.195 27 C -0.207 4.207 28 H 0.068 0.932 29 H 0.188 0.812 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.222 0.778 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.335 -17.092 2.306 17.299 hybrid contribution 0.784 1.856 0.293 2.036 sum 2.119 -15.236 2.598 15.601 Atomic orbital electron populations 1.70181 1.07289 1.27048 1.48538 1.25715 0.95356 1.02181 0.93620 0.85788 0.78522 0.79409 0.78861 1.19632 1.21152 1.19588 1.22090 0.93317 0.93296 1.54066 0.93023 1.19318 0.87715 0.88885 0.86026 0.93650 1.86524 1.37976 1.96337 1.15216 1.22884 0.96692 0.90242 0.99166 1.62131 1.19949 1.00701 1.40059 1.21092 0.93611 0.89203 0.99845 1.19764 0.98641 0.94929 0.93972 1.21143 0.98877 0.95200 0.99162 1.21350 0.98907 0.97745 0.96444 1.21396 1.00015 1.00058 0.93292 1.21369 0.97955 0.94630 1.00640 1.21111 0.99394 0.97528 0.95151 1.21097 0.91375 0.98686 0.86588 0.89835 1.22485 0.92929 0.97572 0.86786 1.86435 1.37534 1.63089 1.49914 1.23100 1.06493 1.01931 0.91519 1.23023 0.96768 0.98348 1.01326 1.22928 0.96673 1.03468 0.97631 0.93215 0.81242 0.92491 0.94649 0.90536 0.93704 0.86173 0.84295 0.84039 0.84644 0.86671 0.94804 0.92858 0.77799 0.88204 0.87793 0.88113 0.88613 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.24 12.84 21.45 0.28 -51.97 16 2 C 0.03 1.87 5.40 84.65 0.46 2.33 16 3 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.59 -31.78 8.76 25.60 0.22 -31.56 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.24 11.70 1.50 29.85 0.04 11.74 16 10 H 0.05 2.45 4.34 -2.39 -0.01 2.44 16 11 O -0.56 -28.74 11.17 -148.98 -1.66 -30.40 16 12 C 0.04 1.54 4.04 86.30 0.35 1.89 16 13 N -0.51 -18.32 4.05 -875.50 -3.54 -21.86 16 14 C 0.09 2.75 5.08 85.56 0.43 3.18 16 15 C -0.07 -2.11 5.11 -19.87 -0.10 -2.21 16 16 C -0.13 -3.26 8.27 22.27 0.18 -3.07 16 17 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 18 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 19 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 20 C -0.11 -3.22 9.71 22.27 0.22 -3.00 16 21 C 0.13 4.52 1.89 44.92 0.08 4.61 16 22 H 0.08 2.70 4.85 -2.39 -0.01 2.69 16 23 C 0.08 3.10 5.95 71.98 0.43 3.53 16 24 O -0.57 -21.62 13.55 -148.98 -2.02 -23.64 16 25 C -0.21 -6.90 3.56 -10.80 -0.04 -6.94 16 26 C -0.16 -3.93 10.18 30.62 0.31 -3.62 16 27 C -0.17 -4.57 9.83 30.62 0.30 -4.27 16 28 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 29 H 0.34 16.72 9.04 -74.06 -0.67 16.05 16 30 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 31 H 0.04 1.42 5.90 -2.39 -0.01 1.41 16 32 H 0.08 2.28 7.82 -2.38 -0.02 2.26 16 33 H 0.04 1.27 7.99 -2.38 -0.02 1.26 16 34 H 0.12 2.82 7.25 -2.91 -0.02 2.80 16 35 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.03 1.19 7.70 -2.38 -0.02 1.17 16 40 H 0.05 2.52 3.83 -2.39 -0.01 2.51 16 41 H 0.38 11.97 9.12 -74.06 -0.68 11.30 16 42 H 0.10 3.96 4.60 -2.38 -0.01 3.95 16 43 H 0.10 2.25 8.09 -2.39 -0.02 2.23 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 46 H 0.10 2.50 8.01 -2.38 -0.02 2.48 16 Total: -1.00 -64.68 362.94 -1.70 -66.38 By element: Atomic # 1 Polarization: 52.23 SS G_CDS: -0.34 Total: 51.89 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.57 Total: -35.51 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -3.27 Total: -73.83 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -3.68 Total: -54.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.68 -1.70 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.375 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds