Wall clock time and date at job start Tue Mar 31 2020 10:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.82297 * 2 1 4 4 O 1.43237 * 109.82860 * 120.88524 * 2 1 3 5 5 C 1.43646 * 109.97107 * 117.80187 * 4 2 1 6 6 C 1.54942 * 105.13648 * 24.42591 * 5 4 2 7 7 C 1.54379 * 109.82857 * 239.11178 * 2 1 3 8 8 H 1.08992 * 110.85069 * 337.31959 * 7 2 1 9 9 N 1.46503 * 110.84618 * 100.94478 * 7 2 1 10 10 C 1.39660 * 119.99899 * 204.99772 * 9 7 2 11 11 C 1.38975 * 120.04885 * 359.72471 * 10 9 7 12 12 C 1.38120 * 120.03678 * 179.72067 * 11 10 9 13 13 C 1.38218 * 120.12789 * 0.55317 * 12 11 10 14 14 C 1.38767 * 120.09204 * 359.72040 * 13 12 11 15 15 O 1.35893 * 120.02030 * 180.02562 * 14 13 12 16 16 C 1.42901 * 117.00042 * 359.97438 * 15 14 13 17 17 C 1.52993 * 109.47461 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47339 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00451 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00229 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47417 * 60.00204 * 22 20 18 24 24 H 1.48505 * 109.47121 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47213 * 299.99632 * 22 20 18 26 26 C 1.38622 * 119.96691 * 0.02562 * 14 13 12 27 27 H 1.09001 * 109.47002 * 60.69851 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.70288 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.70117 * 1 2 3 30 30 H 1.09005 * 109.47281 * 59.30248 * 3 2 1 31 31 H 1.09001 * 109.46912 * 179.29416 * 3 2 1 32 32 H 1.08991 * 109.47437 * 299.29638 * 3 2 1 33 33 H 1.08991 * 110.30979 * 143.34513 * 5 4 2 34 34 H 1.09001 * 110.30816 * 265.51567 * 5 4 2 35 35 H 1.09009 * 111.12438 * 81.47206 * 6 5 4 36 36 H 1.09001 * 111.12833 * 205.59420 * 6 5 4 37 37 H 0.96998 * 120.00291 * 24.99369 * 9 7 2 38 38 H 1.07998 * 119.97934 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.93430 * 180.29944 * 12 11 10 40 40 H 1.07996 * 119.95007 * 179.70233 * 13 12 11 41 41 H 1.09000 * 109.46960 * 300.00001 * 16 15 14 42 42 H 1.09004 * 109.47033 * 59.99690 * 16 15 14 43 43 H 1.09000 * 109.47079 * 299.99983 * 17 16 15 44 44 H 1.09000 * 109.47088 * 60.00357 * 17 16 15 45 45 H 0.96996 * 119.99714 * 179.97438 * 21 20 18 46 46 H 1.07993 * 120.06838 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 8 2.0159 -0.6917 1.1564 5 6 2.7747 -1.8438 0.7561 6 6 3.2730 -1.5228 -0.6754 7 6 2.0537 -0.7455 -1.2463 8 1 1.3013 -1.4336 -1.6314 9 7 2.4751 0.2015 -2.2816 10 6 2.4817 -0.1875 -3.6229 11 6 2.0942 -1.4745 -3.9761 12 6 2.0953 -1.8572 -5.3032 13 6 2.4924 -0.9656 -6.2820 14 6 2.8857 0.3190 -5.9348 15 8 3.2753 1.1945 -6.8983 16 6 3.2559 0.7250 -8.2478 17 6 3.7225 1.8420 -9.1833 18 6 3.7014 1.3470 -10.6065 19 1 3.3863 0.3367 -10.8223 20 6 4.0834 2.1841 -11.6334 21 7 4.4657 3.4148 -11.3709 22 14 4.0565 1.5706 -13.3975 23 1 2.6746 1.1659 -13.7600 24 1 4.5095 2.6549 -14.3056 25 1 4.9650 0.4033 -13.5296 26 6 2.8811 0.7088 -4.6045 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.6786 1.9591 0.8837 31 1 3.1388 1.4326 0.0127 32 1 1.6991 1.9517 -0.8961 33 1 3.6209 -1.9913 1.4271 34 1 2.1400 -2.7299 0.7459 35 1 4.1621 -0.8926 -0.6498 36 1 3.4579 -2.4360 -1.2411 37 1 2.7495 1.0988 -2.0355 38 1 1.7881 -2.1746 -3.2128 39 1 1.7893 -2.8563 -5.5763 40 1 2.4967 -1.2694 -7.3183 41 1 3.9226 -0.1321 -8.3439 42 1 2.2416 0.4280 -8.5146 43 1 3.0555 2.6988 -9.0871 44 1 4.7367 2.1393 -8.9167 45 1 4.7347 4.0035 -12.0932 46 1 3.1865 1.7083 -4.3325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294582607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:11 Heat of formation + Delta-G solvation = -63.592660 kcal Electronic energy + Delta-G solvation = -24491.435028 eV Core-core repulsion = 20959.983864 eV Total energy + Delta-G solvation = -3531.451164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71179 -39.57524 -37.57077 -35.17766 -33.36742 -33.05131 -31.64332 -30.72094 -29.23681 -28.49877 -27.62397 -25.75599 -24.88562 -22.60434 -22.48367 -21.62551 -20.48539 -19.84808 -18.18107 -17.08838 -16.72164 -16.19396 -15.89411 -15.50920 -15.27917 -15.25086 -14.93300 -14.57465 -14.38584 -13.92667 -13.55571 -13.39649 -13.31105 -12.87485 -12.65222 -12.57540 -12.38868 -12.30148 -12.15722 -11.78335 -11.69600 -11.48920 -11.34266 -11.21354 -10.98378 -10.87153 -10.76674 -10.44612 -10.03257 -9.93908 -9.72982 -9.63963 -9.29829 -8.43999 -7.98356 -7.38751 -6.09301 -4.13877 1.68020 1.82623 3.03956 3.29370 3.33648 3.35405 3.39424 3.98000 4.00890 4.17264 4.27230 4.42820 4.45176 4.66344 4.72632 4.76169 5.05956 5.10304 5.19572 5.24418 5.26979 5.32265 5.36203 5.41032 5.44241 5.51636 5.52826 5.57507 5.66707 5.75031 5.80683 5.85231 6.07738 6.08097 6.08285 6.36112 6.59363 6.63805 6.66517 6.72483 6.86326 7.32175 7.51158 7.59307 7.65797 7.83845 8.10845 8.25488 8.91559 9.50262 11.02284 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.002225 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.941913 B =12578.735062 C =12923.808175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 C -0.161 4.161 4 O -0.371 6.371 5 C 0.050 3.950 6 C -0.174 4.174 7 C 0.133 3.867 8 H 0.099 0.901 9 N -0.737 5.737 10 C 0.245 3.755 11 C -0.244 4.244 12 C -0.037 4.037 13 C -0.263 4.263 14 C 0.188 3.812 15 O -0.316 6.316 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.236 4.236 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.402 0.598 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.264 0.736 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 -10.135 24.613 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 C -0.219 4.219 4 O -0.290 6.290 5 C -0.027 4.027 6 C -0.214 4.214 7 C 0.026 3.974 8 H 0.117 0.883 9 N -0.371 5.371 10 C 0.143 3.857 11 C -0.267 4.267 12 C -0.055 4.055 13 C -0.283 4.283 14 C 0.140 3.860 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.259 4.259 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.241 0.759 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.856 -9.819 24.837 27.342 hybrid contribution 0.169 -0.271 -1.248 1.288 sum -5.687 -10.091 23.589 26.279 Atomic orbital electron populations 1.22099 0.93451 1.02732 1.02838 1.22204 0.94442 0.92873 0.84890 1.22094 1.01830 0.94997 1.02935 1.88483 1.70794 1.40278 1.29417 1.23317 0.95207 0.88901 0.95226 1.23805 0.99481 1.01950 0.96119 1.22371 0.95908 0.91254 0.87890 0.88325 1.44706 1.74604 1.15481 1.02283 1.17349 0.92417 0.92552 0.83337 1.20401 1.14022 0.95647 0.96591 1.20623 0.94743 0.98256 0.91923 1.21161 1.12042 0.94463 1.00625 1.18819 0.89914 0.88483 0.88749 1.86149 1.80181 1.39352 1.17180 1.23321 1.00130 1.00391 0.76925 1.19122 0.97682 0.92760 0.91635 1.20940 1.45835 0.98946 0.90728 0.92404 1.24992 0.94980 0.94816 0.99423 1.69969 1.44055 1.06081 1.32713 0.86544 0.78551 0.78394 0.83860 1.20088 1.21134 1.20094 1.19654 1.15480 1.00976 0.89828 0.91090 0.92037 0.91626 0.91269 0.91775 0.90745 0.89542 0.91972 0.89850 0.89471 0.75897 0.86765 0.86345 0.85541 0.93078 0.93074 0.95436 0.95441 0.92665 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.74 37.16 0.32 -0.81 16 2 C 0.10 0.77 1.25 -89.90 -0.11 0.66 16 3 C -0.16 -1.19 7.59 37.16 0.28 -0.91 16 4 O -0.37 -3.40 10.68 -35.23 -0.38 -3.78 16 5 C 0.05 0.35 7.78 38.18 0.30 0.65 16 6 C -0.17 -1.30 6.85 -24.40 -0.17 -1.47 16 7 C 0.13 1.09 2.50 -65.90 -0.16 0.93 16 8 H 0.10 0.81 6.09 -51.93 -0.32 0.49 16 9 N -0.74 -7.19 5.06 -50.23 -0.25 -7.44 16 10 C 0.25 3.12 6.65 -83.81 -0.56 2.57 16 11 C -0.24 -2.99 9.22 -39.35 -0.36 -3.36 16 12 C -0.04 -0.48 10.03 -39.63 -0.40 -0.88 16 13 C -0.26 -4.19 9.04 -39.39 -0.36 -4.55 16 14 C 0.19 3.34 6.68 -39.24 -0.26 3.08 16 15 O -0.32 -6.61 10.13 -19.40 -0.20 -6.81 16 16 C 0.07 1.44 4.68 37.15 0.17 1.61 16 17 C 0.03 0.66 5.34 -27.89 -0.15 0.52 16 18 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.24 -3.61 9.83 -39.23 -0.39 -4.00 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 7.98 -51.93 -0.41 0.06 16 32 H 0.07 0.52 6.83 -51.93 -0.35 0.16 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 3.58 5.88 -40.82 -0.24 3.34 16 38 H 0.11 1.15 6.19 -52.49 -0.32 0.82 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 41 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 42 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -30.81 368.94 -9.19 -40.00 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.39 Total: 1.40 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -2.25 Total: -19.40 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.48 Total: -33.28 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.57 Total: -10.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.81 -9.19 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294582607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.589 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds