Wall clock time and date at job start Tue Mar 31 2020 10:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.82297 * 2 1 4 4 O 1.43237 * 109.82860 * 120.88524 * 2 1 3 5 5 C 1.43646 * 109.97107 * 117.80187 * 4 2 1 6 6 C 1.54942 * 105.13648 * 24.42591 * 5 4 2 7 7 C 1.54379 * 109.82857 * 239.11178 * 2 1 3 8 8 H 1.08992 * 110.85069 * 337.31959 * 7 2 1 9 9 N 1.46503 * 110.84618 * 100.94478 * 7 2 1 10 10 C 1.39660 * 119.99899 * 204.99772 * 9 7 2 11 11 C 1.38975 * 120.04885 * 359.72471 * 10 9 7 12 12 C 1.38120 * 120.03678 * 179.72067 * 11 10 9 13 13 C 1.38218 * 120.12789 * 0.55317 * 12 11 10 14 14 C 1.38767 * 120.09204 * 359.72040 * 13 12 11 15 15 O 1.35893 * 120.02030 * 180.02562 * 14 13 12 16 16 C 1.42901 * 117.00042 * 359.97438 * 15 14 13 17 17 C 1.52993 * 109.47461 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47339 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00451 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00229 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47417 * 60.00204 * 22 20 18 24 24 H 1.48505 * 109.47121 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47213 * 299.99632 * 22 20 18 26 26 C 1.38622 * 119.96691 * 0.02562 * 14 13 12 27 27 H 1.09001 * 109.47002 * 60.69851 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.70288 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.70117 * 1 2 3 30 30 H 1.09005 * 109.47281 * 59.30248 * 3 2 1 31 31 H 1.09001 * 109.46912 * 179.29416 * 3 2 1 32 32 H 1.08991 * 109.47437 * 299.29638 * 3 2 1 33 33 H 1.08991 * 110.30979 * 143.34513 * 5 4 2 34 34 H 1.09001 * 110.30816 * 265.51567 * 5 4 2 35 35 H 1.09009 * 111.12438 * 81.47206 * 6 5 4 36 36 H 1.09001 * 111.12833 * 205.59420 * 6 5 4 37 37 H 0.96998 * 120.00291 * 24.99369 * 9 7 2 38 38 H 1.07998 * 119.97934 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.93430 * 180.29944 * 12 11 10 40 40 H 1.07996 * 119.95007 * 179.70233 * 13 12 11 41 41 H 1.09000 * 109.46960 * 300.00001 * 16 15 14 42 42 H 1.09004 * 109.47033 * 59.99690 * 16 15 14 43 43 H 1.09000 * 109.47079 * 299.99983 * 17 16 15 44 44 H 1.09000 * 109.47088 * 60.00357 * 17 16 15 45 45 H 0.96996 * 119.99714 * 179.97438 * 21 20 18 46 46 H 1.07993 * 120.06838 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 8 2.0159 -0.6917 1.1564 5 6 2.7747 -1.8438 0.7561 6 6 3.2730 -1.5228 -0.6754 7 6 2.0537 -0.7455 -1.2463 8 1 1.3013 -1.4336 -1.6314 9 7 2.4751 0.2015 -2.2816 10 6 2.4817 -0.1875 -3.6229 11 6 2.0942 -1.4745 -3.9761 12 6 2.0953 -1.8572 -5.3032 13 6 2.4924 -0.9656 -6.2820 14 6 2.8857 0.3190 -5.9348 15 8 3.2753 1.1945 -6.8983 16 6 3.2559 0.7250 -8.2478 17 6 3.7225 1.8420 -9.1833 18 6 3.7014 1.3470 -10.6065 19 1 3.3863 0.3367 -10.8223 20 6 4.0834 2.1841 -11.6334 21 7 4.4657 3.4148 -11.3709 22 14 4.0565 1.5706 -13.3975 23 1 2.6746 1.1659 -13.7600 24 1 4.5095 2.6549 -14.3056 25 1 4.9650 0.4033 -13.5296 26 6 2.8811 0.7088 -4.6045 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.6786 1.9591 0.8837 31 1 3.1388 1.4326 0.0127 32 1 1.6991 1.9517 -0.8961 33 1 3.6209 -1.9913 1.4271 34 1 2.1400 -2.7299 0.7459 35 1 4.1621 -0.8926 -0.6498 36 1 3.4579 -2.4360 -1.2411 37 1 2.7495 1.0988 -2.0355 38 1 1.7881 -2.1746 -3.2128 39 1 1.7893 -2.8563 -5.5763 40 1 2.4967 -1.2694 -7.3183 41 1 3.9226 -0.1321 -8.3439 42 1 2.2416 0.4280 -8.5146 43 1 3.0555 2.6988 -9.0871 44 1 4.7367 2.1393 -8.9167 45 1 4.7347 4.0035 -12.0932 46 1 3.1865 1.7083 -4.3325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294582607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:10 Heat of formation + Delta-G solvation = -81.443850 kcal Electronic energy + Delta-G solvation = -24492.209114 eV Core-core repulsion = 20959.983864 eV Total energy + Delta-G solvation = -3532.225250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46577 -40.76089 -38.79666 -36.13540 -35.40252 -33.71807 -32.63281 -32.29698 -30.61163 -29.41211 -28.29625 -27.05884 -26.21443 -23.89260 -23.47037 -22.74702 -21.82407 -20.65546 -19.39062 -18.43878 -17.81014 -17.39443 -16.90754 -16.88570 -16.59478 -16.37936 -16.30082 -15.77632 -15.23780 -14.70677 -14.49864 -14.40457 -14.31243 -14.18715 -13.98524 -13.78253 -13.33170 -13.27353 -13.10122 -12.94824 -12.77242 -12.64286 -12.54765 -12.48561 -12.16167 -12.05056 -11.98323 -11.65266 -11.58721 -11.55374 -11.38501 -10.82472 -10.60876 -10.54565 -9.22856 -8.38165 -8.26071 -6.39860 0.56907 0.68081 1.41228 1.45441 1.53343 2.09587 2.37490 2.65653 2.82542 2.95053 3.08156 3.47965 3.66278 3.81771 3.99350 4.09370 4.12762 4.18232 4.26479 4.29524 4.30507 4.35919 4.49314 4.56445 4.62429 4.68566 4.69073 4.75317 4.83512 4.84208 4.87843 4.93879 5.00899 5.09156 5.22205 5.26860 5.30087 5.33266 5.47658 5.52165 5.63848 5.66973 5.75871 6.06410 6.07803 6.37558 6.60683 6.72566 6.74899 7.30172 8.86937 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.002225 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.941913 B =12578.735062 C =12923.808175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.096 3.904 3 C -0.162 4.162 4 O -0.388 6.388 5 C 0.048 3.952 6 C -0.171 4.171 7 C 0.130 3.870 8 H 0.107 0.893 9 N -0.728 5.728 10 C 0.254 3.746 11 C -0.235 4.235 12 C -0.031 4.031 13 C -0.280 4.280 14 C 0.152 3.848 15 O -0.343 6.343 16 C 0.087 3.913 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.263 1.263 26 C -0.251 4.251 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.059 0.941 42 H 0.059 0.941 43 H -0.002 1.002 44 H -0.002 1.002 45 H 0.267 0.733 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -12.736 25.460 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 C -0.219 4.219 4 O -0.308 6.308 5 C -0.028 4.028 6 C -0.210 4.210 7 C 0.024 3.976 8 H 0.125 0.875 9 N -0.360 5.360 10 C 0.150 3.850 11 C -0.257 4.257 12 C -0.050 4.050 13 C -0.300 4.300 14 C 0.106 3.894 15 O -0.257 6.257 16 C 0.013 3.987 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.188 1.188 26 C -0.274 4.274 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.245 0.755 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.139 0.861 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.767 -12.434 25.742 29.377 hybrid contribution 0.431 0.528 -1.270 1.441 sum -6.336 -11.905 24.472 27.942 Atomic orbital electron populations 1.22094 0.92945 1.03130 1.02860 1.22233 0.94822 0.92861 0.84518 1.22101 1.01717 0.94986 1.03136 1.88469 1.71178 1.41104 1.30048 1.23458 0.95644 0.88706 0.94985 1.23771 0.98641 1.01990 0.96559 1.22518 0.96543 0.91089 0.87440 0.87518 1.44789 1.73623 1.16078 1.01525 1.17387 0.91239 0.92388 0.83960 1.20772 1.12256 0.95628 0.97028 1.20969 0.93345 0.99012 0.91645 1.21236 1.13239 0.94318 1.01252 1.19147 0.92357 0.89184 0.88734 1.86055 1.81646 1.40900 1.17073 1.22835 1.00424 0.98254 0.77229 1.18966 0.95363 0.93483 0.93090 1.21372 1.45857 0.99668 0.91503 0.91096 1.26058 0.94217 0.94846 1.04651 1.70120 1.44970 1.07589 1.34399 0.85329 0.79242 0.78044 0.77407 1.18790 1.20783 1.18802 1.19759 1.16368 1.01638 0.89631 0.91085 0.91453 0.91625 0.91179 0.91972 0.90468 0.88643 0.90566 0.90684 0.88503 0.75462 0.83663 0.83222 0.86070 0.92247 0.92235 0.98396 0.98407 0.92443 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.74 71.98 0.63 -1.32 16 2 C 0.10 1.34 1.25 -10.32 -0.01 1.33 16 3 C -0.16 -2.20 7.59 71.98 0.55 -1.65 16 4 O -0.39 -6.32 10.68 -148.98 -1.59 -7.91 16 5 C 0.05 0.55 7.78 72.65 0.57 1.12 16 6 C -0.17 -2.09 6.85 32.10 0.22 -1.87 16 7 C 0.13 1.80 2.50 46.30 0.12 1.91 16 8 H 0.11 1.34 6.09 -2.39 -0.01 1.33 16 9 N -0.73 -12.78 5.06 -312.83 -1.58 -14.37 16 10 C 0.25 6.02 6.65 38.20 0.25 6.28 16 11 C -0.23 -5.00 9.22 22.42 0.21 -4.80 16 12 C -0.03 -0.74 10.03 22.24 0.22 -0.52 16 13 C -0.28 -8.78 9.04 22.39 0.20 -8.58 16 14 C 0.15 5.51 6.68 22.49 0.15 5.66 16 15 O -0.34 -15.05 10.13 -92.34 -0.94 -15.99 16 16 C 0.09 3.92 4.68 71.98 0.34 4.25 16 17 C 0.03 1.57 5.34 29.85 0.16 1.73 16 18 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 19 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 20 C 0.00 0.04 5.46 84.65 0.46 0.51 16 21 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 22 Si 0.98 43.72 29.54 68.60 2.03 45.74 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 C -0.25 -7.69 9.83 22.50 0.22 -7.47 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.86 7.98 -2.39 -0.02 0.84 16 32 H 0.08 0.99 6.83 -2.39 -0.02 0.97 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 6.70 5.88 -92.71 -0.55 6.16 16 38 H 0.15 2.21 6.19 -2.91 -0.02 2.19 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.12 3.83 6.29 -2.91 -0.02 3.81 16 41 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16 42 H 0.06 2.53 7.66 -2.38 -0.02 2.51 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -68.22 368.94 3.13 -65.09 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.42 Total: 18.72 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 4.51 Total: -34.37 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.30 Total: -71.28 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -2.53 Total: -23.90 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -68.22 3.13 -65.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294582607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.359 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds