Wall clock time and date at job start Tue Mar 31 2020 08:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47424 * 60.00391 * 3 2 1 5 5 C 1.52997 * 109.47448 * 299.99950 * 3 2 1 6 6 C 1.50707 * 109.46905 * 180.02562 * 3 2 1 7 7 C 1.38238 * 119.99971 * 180.02562 * 6 3 2 8 8 C 1.38231 * 119.99969 * 180.02562 * 7 6 3 9 9 C 1.38235 * 120.00021 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00137 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47140 * 93.23333 * 10 9 8 12 12 C 1.36943 * 119.99794 * 267.00682 * 11 10 9 13 13 H 1.07994 * 119.99782 * 322.45828 * 12 11 10 14 14 C 1.38812 * 119.99705 * 142.44994 * 12 11 10 15 15 N 1.31625 * 119.99759 * 157.80481 * 14 12 11 16 16 Si 1.86799 * 120.00224 * 337.81146 * 14 12 11 17 17 H 1.48500 * 109.47217 * 95.31532 * 16 14 12 18 18 H 1.48504 * 109.46768 * 215.31612 * 16 14 12 19 19 H 1.48501 * 109.47352 * 335.31432 * 16 14 12 20 20 C 1.46494 * 120.00046 * 86.73073 * 11 10 9 21 21 C 1.50703 * 109.46984 * 90.00360 * 20 11 10 22 22 O 1.20823 * 119.99926 * 359.97438 * 21 20 11 23 23 O 1.34232 * 119.99786 * 180.02562 * 21 20 11 24 24 C 1.38236 * 120.00012 * 0.25478 * 9 8 7 25 25 C 1.38231 * 119.99958 * 0.02562 * 6 3 2 26 26 H 1.09008 * 109.47204 * 59.99854 * 1 2 3 27 27 H 1.09006 * 109.47577 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47566 * 300.00073 * 1 2 3 29 29 H 1.08998 * 109.46825 * 239.99918 * 2 1 3 30 30 H 1.09000 * 109.47055 * 120.00497 * 2 1 3 31 31 H 1.08999 * 109.47395 * 180.02562 * 4 3 2 32 32 H 1.09008 * 109.46509 * 299.99373 * 4 3 2 33 33 H 1.08994 * 109.47204 * 59.99595 * 4 3 2 34 34 H 1.09005 * 109.47005 * 300.00147 * 5 3 2 35 35 H 1.08994 * 109.47328 * 60.00237 * 5 3 2 36 36 H 1.09002 * 109.47549 * 180.02562 * 5 3 2 37 37 H 1.08003 * 120.00266 * 359.97438 * 7 6 3 38 38 H 1.07999 * 120.00218 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.46942 * 333.23653 * 10 9 8 40 40 H 1.08999 * 109.47646 * 213.23243 * 10 9 8 41 41 H 0.97002 * 119.99853 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.47146 * 210.00245 * 20 11 10 43 43 H 1.08997 * 109.47359 * 330.00260 * 20 11 10 44 44 H 0.96696 * 117.00256 * 180.02562 * 23 21 20 45 45 H 1.08004 * 119.99971 * 179.73316 * 24 9 8 46 46 H 1.07997 * 120.00108 * 0.02562 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 6 3.5470 1.4424 -0.0006 7 6 4.2382 2.6396 -0.0002 8 6 5.6205 2.6396 -0.0013 9 6 6.3117 1.4424 -0.0023 10 6 7.8187 1.4423 -0.0041 11 7 8.3087 1.3642 1.3743 12 6 8.5961 2.5113 2.0648 13 1 9.0493 3.3489 1.5555 14 6 8.3049 2.5975 3.4193 15 7 8.9413 3.4669 4.1753 16 14 7.0099 1.4795 4.1692 17 1 7.6674 0.2840 4.7554 18 1 6.2781 2.2135 5.2328 19 1 6.0545 1.0523 3.1156 20 6 8.4853 0.0592 2.0160 21 6 9.8828 -0.4424 1.7579 22 8 10.6520 0.2218 1.1045 23 8 10.2725 -1.6276 2.2530 24 6 5.6205 0.2453 -0.0075 25 6 4.2381 0.2453 -0.0016 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8929 3.1915 1.2490 32 1 0.4399 2.1638 1.2492 33 1 1.8933 1.6499 2.1392 34 1 1.8933 1.6499 -2.1392 35 1 0.4400 2.1638 -1.2492 36 1 1.8936 3.1913 -1.2494 37 1 3.6982 3.5749 0.0002 38 1 6.1606 3.5748 -0.0014 39 1 8.1814 2.3600 -0.4672 40 1 8.1814 0.5829 -0.5679 41 1 8.7381 3.5269 5.1219 42 1 8.3274 0.1581 3.0900 43 1 7.7640 -0.6478 1.6063 44 1 11.1782 -1.9071 2.0614 45 1 6.1605 -0.6901 -0.0127 46 1 3.6981 -0.6900 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604897607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:39 Heat of formation + Delta-G solvation = -55.317368 kcal Electronic energy + Delta-G solvation = -25810.290724 eV Core-core repulsion = 22279.198403 eV Total energy + Delta-G solvation = -3531.092321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.77305 -39.34571 -37.24023 -35.74965 -34.94270 -32.07421 -31.18290 -30.64634 -29.46365 -27.72268 -27.28715 -25.94170 -24.32351 -22.50641 -21.87122 -21.14410 -20.18633 -18.62547 -17.41697 -17.07129 -16.47893 -15.87659 -15.36722 -14.99109 -14.79123 -14.68482 -14.53565 -14.14877 -13.93917 -13.51436 -13.44251 -13.08104 -12.80393 -12.69927 -12.42787 -12.20273 -12.04098 -12.03184 -11.81123 -11.50028 -11.33480 -11.19924 -11.04525 -10.85233 -10.76590 -10.64958 -10.55008 -10.31130 -10.27539 -10.09631 -9.80336 -9.63275 -8.69080 -8.40712 -8.04301 -7.11902 -6.12214 -3.55956 1.82753 1.91575 3.04303 3.20090 3.40795 3.47095 3.73993 4.21951 4.39673 4.65825 4.71044 4.90169 4.96377 5.24201 5.24767 5.30477 5.35948 5.38430 5.42065 5.54255 5.58604 5.65667 5.77076 5.81931 5.85685 5.86605 5.89465 5.95070 5.99652 6.03912 6.06877 6.11843 6.16213 6.19057 6.34108 6.36708 6.49579 6.56017 6.62538 6.95025 7.02489 7.18585 7.24967 7.52321 7.84281 8.25101 8.64029 8.82928 9.53198 9.87361 11.02131 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.004388 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.408466 B = 6378.803450 C = 6824.345304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.021 4.021 4 C -0.140 4.140 5 C -0.138 4.138 6 C -0.087 4.087 7 C -0.118 4.118 8 C -0.094 4.094 9 C -0.086 4.086 10 C 0.183 3.817 11 N -0.565 5.565 12 C -0.268 4.268 13 H 0.085 0.915 14 C 0.041 3.959 15 N -0.888 5.888 16 Si 0.859 3.141 17 H -0.283 1.283 18 H -0.296 1.296 19 H -0.255 1.255 20 C 0.142 3.858 21 C 0.442 3.558 22 O -0.502 6.502 23 O -0.536 6.536 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.266 0.734 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.390 0.610 45 H 0.111 0.889 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -7.588 -8.549 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.021 4.021 4 C -0.198 4.198 5 C -0.195 4.195 6 C -0.088 4.088 7 C -0.136 4.136 8 C -0.113 4.113 9 C -0.088 4.088 10 C 0.058 3.942 11 N -0.284 5.284 12 C -0.396 4.396 13 H 0.103 0.897 14 C -0.161 4.161 15 N -0.527 5.527 16 Si 0.688 3.312 17 H -0.211 1.211 18 H -0.223 1.223 19 H -0.178 1.178 20 C 0.013 3.987 21 C 0.280 3.720 22 O -0.387 6.387 23 O -0.347 6.347 24 C -0.136 4.136 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.247 0.753 45 H 0.129 0.871 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.059 -7.130 -8.497 17.908 hybrid contribution 0.074 -0.742 0.725 1.040 sum -13.985 -7.872 -7.772 17.832 Atomic orbital electron populations 1.21913 0.96103 1.01298 1.01975 1.21646 0.95530 0.95941 1.02069 1.19428 0.91312 0.95558 0.95815 1.21942 1.00392 1.00423 0.96998 1.21919 1.00450 1.00273 0.96837 1.19609 0.94013 0.93369 1.01768 1.20882 0.94256 0.97031 1.01443 1.21043 0.93534 0.98182 0.98536 1.20881 0.98370 0.92753 0.96837 1.20021 0.86988 1.00968 0.86252 1.43839 1.71842 1.00664 1.12011 1.18794 1.35521 0.93108 0.92175 0.89737 1.25474 0.97289 0.96675 0.96647 1.69870 1.39460 1.37569 1.05825 0.87178 0.84437 0.80091 0.79500 1.21104 1.22306 1.17837 1.21140 0.88187 0.88891 1.00489 1.26156 0.93213 0.77155 0.75427 1.90617 1.54821 1.56079 1.37195 1.84683 1.36748 1.39306 1.73999 1.20964 0.93923 0.97492 1.01234 1.20985 0.94083 0.97305 1.02073 0.92515 0.93096 0.92466 0.91759 0.91734 0.92458 0.92436 0.92575 0.92686 0.92466 0.92535 0.86956 0.86006 0.91185 0.93169 0.92416 0.89037 0.89897 0.75289 0.87058 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.21 37.16 0.34 -0.98 16 2 C -0.11 -1.17 3.65 -26.74 -0.10 -1.27 16 3 C -0.02 -0.24 0.63 -155.66 -0.10 -0.34 16 4 C -0.14 -1.61 7.93 37.16 0.29 -1.31 16 5 C -0.14 -1.39 7.93 37.16 0.29 -1.10 16 6 C -0.09 -1.27 4.76 -104.62 -0.50 -1.76 16 7 C -0.12 -1.85 8.71 -39.58 -0.34 -2.19 16 8 C -0.09 -1.67 9.69 -39.58 -0.38 -2.05 16 9 C -0.09 -1.56 5.46 -104.62 -0.57 -2.13 16 10 C 0.18 3.58 5.80 -5.19 -0.03 3.55 16 11 N -0.56 -13.08 1.56 -175.99 -0.27 -13.36 16 12 C -0.27 -7.31 9.91 -15.06 -0.15 -7.46 16 13 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 14 C 0.04 1.16 5.31 -17.43 -0.09 1.06 16 15 N -0.89 -26.67 13.97 55.49 0.78 -25.89 16 16 Si 0.86 21.27 25.02 -169.99 -4.25 17.02 16 17 H -0.28 -6.80 6.67 56.52 0.38 -6.42 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.25 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.14 3.05 5.10 -5.20 -0.03 3.03 16 21 C 0.44 9.27 8.40 36.01 0.30 9.57 16 22 O -0.50 -12.03 17.19 -18.75 -0.32 -12.36 16 23 O -0.54 -9.05 13.42 -39.26 -0.53 -9.58 16 24 C -0.12 -1.93 9.46 -39.58 -0.37 -2.30 16 25 C -0.13 -1.89 8.98 -39.58 -0.36 -2.24 16 26 H 0.06 0.45 6.43 -51.92 -0.33 0.11 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 31 H 0.06 0.67 7.39 -51.93 -0.38 0.28 16 32 H 0.06 0.55 6.43 -51.92 -0.33 0.22 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 36 H 0.06 0.58 7.39 -51.93 -0.38 0.19 16 37 H 0.11 1.55 7.10 -52.48 -0.37 1.18 16 38 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.07 1.38 7.94 -51.93 -0.41 0.97 16 40 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.09 2.13 3.22 -51.93 -0.17 1.96 16 43 H 0.08 1.51 7.39 -51.93 -0.38 1.13 16 44 H 0.39 4.75 9.10 45.56 0.41 5.17 16 45 H 0.11 1.65 7.64 -52.48 -0.40 1.25 16 46 H 0.12 1.47 5.90 -52.49 -0.31 1.16 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -32.35 363.70 -7.12 -39.46 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.21 Total: 7.14 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.79 Total: -7.93 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.50 Total: -39.25 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.85 Total: -21.93 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.25 Total: 17.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.35 -7.12 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604897607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.854 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds