Wall clock time and date at job start Tue Mar 31 2020 08:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00040 * 2 1 4 4 C 1.53003 * 109.46874 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46923 * 174.70926 * 4 3 2 6 6 N 1.46504 * 109.47137 * 294.70071 * 4 3 2 7 7 C 1.34777 * 120.00307 * 204.99890 * 6 4 3 8 8 O 1.21279 * 119.99573 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00088 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.46764 * 179.97438 * 9 7 6 11 11 C 1.37642 * 120.12762 * 264.99656 * 10 9 7 12 12 C 1.38618 * 120.24560 * 180.29858 * 11 10 9 13 13 C 1.38652 * 120.49870 * 359.44898 * 12 11 10 14 14 C 1.37594 * 120.25179 * 0.55447 * 13 12 11 15 15 C 1.40694 * 120.12646 * 85.02471 * 10 9 7 16 16 C 1.41398 * 120.24600 * 359.95145 * 15 10 9 17 17 H 1.07991 * 119.99980 * 334.72831 * 16 15 10 18 18 C 1.39945 * 119.99931 * 154.72912 * 16 15 10 19 19 N 1.30825 * 120.00015 * 344.30919 * 18 16 15 20 20 Si 1.86800 * 119.99787 * 164.31514 * 18 16 15 21 21 H 1.48487 * 109.47488 * 59.99717 * 20 18 16 22 22 H 1.48506 * 109.46863 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46739 * 299.99090 * 20 18 16 24 24 C 1.52997 * 109.47271 * 54.70282 * 4 3 2 25 25 C 1.53004 * 109.46795 * 56.49714 * 24 4 3 26 26 C 1.52995 * 109.47124 * 176.49527 * 24 4 3 27 27 H 1.09002 * 109.46807 * 299.99488 * 1 2 3 28 28 H 1.09003 * 109.47070 * 59.99262 * 1 2 3 29 29 H 1.08999 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47128 * 60.00723 * 3 2 1 31 31 H 1.08995 * 109.47780 * 300.00460 * 3 2 1 32 32 H 0.96998 * 120.00047 * 25.00372 * 6 4 3 33 33 H 1.09003 * 109.46928 * 60.00547 * 9 7 6 34 34 H 1.08996 * 109.47055 * 299.99796 * 9 7 6 35 35 H 1.07994 * 119.87876 * 0.03000 * 11 10 9 36 36 H 1.08001 * 119.74731 * 179.70313 * 12 11 10 37 37 H 1.08003 * 119.87254 * 180.29802 * 13 12 11 38 38 H 1.08000 * 120.12636 * 179.74797 * 14 13 12 39 39 H 0.96999 * 119.99738 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47225 * 296.49806 * 24 4 3 41 41 H 1.08994 * 109.47435 * 60.00262 * 25 24 4 42 42 H 1.08995 * 109.46926 * 180.02562 * 25 24 4 43 43 H 1.09004 * 109.47041 * 299.99673 * 25 24 4 44 44 H 1.08992 * 109.47161 * 70.48239 * 26 24 4 45 45 H 1.09008 * 109.47047 * 190.47768 * 26 24 4 46 46 H 1.08999 * 109.47362 * 310.47713 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9785 2.1759 -0.0954 6 7 3.9772 0.5703 1.2539 7 6 5.2217 0.8026 1.7165 8 8 5.9756 1.5205 1.0943 9 6 5.6762 0.1703 3.0067 10 6 7.0953 0.5860 3.2971 11 6 8.1433 -0.2207 2.9158 12 6 9.4493 0.1563 3.1872 13 6 9.7162 1.3532 3.8343 14 6 8.6842 2.1753 4.2247 15 6 7.3540 1.8000 3.9596 16 6 6.2854 2.6371 4.3556 17 1 5.3418 2.5922 3.8323 18 6 6.4507 3.5237 5.4257 19 7 7.4567 3.3754 6.2487 20 14 5.2346 4.9189 5.6788 21 1 3.8746 4.3592 5.8834 22 1 5.6291 5.7088 6.8729 23 1 5.2334 5.7977 4.4817 24 6 3.9776 0.3136 -1.1783 25 6 3.4417 0.9086 -2.4820 26 6 5.5059 0.2641 -1.2306 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.3741 -0.0036 1.7517 33 1 5.6271 -0.9149 2.9165 34 1 5.0278 0.4972 3.8196 35 1 7.9472 -1.1530 2.4072 36 1 10.2653 -0.4851 2.8887 37 1 10.7378 1.6393 4.0365 38 1 8.8942 3.1052 4.7323 39 1 7.5710 3.9897 6.9906 40 1 3.5856 -0.6955 -1.0512 41 1 3.8337 1.9176 -2.6091 42 1 3.7562 0.2879 -3.3209 43 1 2.3528 0.9437 -2.4448 44 1 5.8792 -0.3239 -0.3923 45 1 5.8227 -0.1958 -2.1667 46 1 5.9045 1.2768 -1.1701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776957708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:57 Heat of formation + Delta-G solvation = -98.238468 kcal Electronic energy + Delta-G solvation = -25838.360780 eV Core-core repulsion = 22305.407261 eV Total energy + Delta-G solvation = -3532.953519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08710 -39.54784 -38.71683 -36.81898 -35.48364 -34.30432 -33.24295 -31.32178 -30.40169 -28.57459 -27.70516 -27.07506 -26.59172 -24.11502 -22.80093 -22.20518 -20.98196 -20.77981 -19.04476 -17.86822 -17.65024 -17.18229 -17.13793 -16.47392 -16.29131 -16.14412 -15.96736 -15.40346 -15.26332 -14.70874 -14.47816 -14.34428 -13.97256 -13.65733 -13.51287 -13.34102 -13.18311 -13.01621 -12.88448 -12.86210 -12.73666 -12.53831 -12.46673 -12.29587 -12.10737 -12.07249 -11.61176 -11.55658 -11.30806 -11.18154 -11.01579 -10.62008 -10.51499 -9.81214 -9.20563 -9.13511 -8.56924 -6.27142 1.02052 1.16161 1.35623 1.46067 1.55110 1.94936 2.20507 2.42851 2.80576 2.87592 3.72580 3.80959 3.93302 4.14975 4.20866 4.37076 4.39648 4.42119 4.49187 4.51394 4.62672 4.63280 4.63962 4.71987 4.77644 4.82712 4.84061 4.90023 4.95066 5.03694 5.08744 5.10488 5.21799 5.24343 5.39741 5.42926 5.54402 5.57499 5.73647 5.79667 6.06498 6.19292 6.22974 6.23885 6.44456 6.73557 6.81226 7.01703 7.13917 7.56892 8.38786 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.004708 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.347959 B = 5945.816571 C = 7357.749012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.060 3.940 4 C 0.150 3.850 5 H 0.075 0.925 6 N -0.720 5.720 7 C 0.519 3.481 8 O -0.561 6.561 9 C -0.071 4.071 10 C -0.183 4.183 11 C -0.092 4.092 12 C -0.243 4.243 13 C -0.118 4.118 14 C -0.194 4.194 15 C 0.097 3.903 16 C -0.481 4.481 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.827 5.827 20 Si 0.971 3.029 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.270 1.270 24 C -0.092 4.092 25 C -0.139 4.139 26 C -0.133 4.133 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.411 0.589 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.285 0.715 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.055 0.945 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 -5.275 -10.884 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.017 4.017 4 C 0.046 3.954 5 H 0.093 0.907 6 N -0.373 5.373 7 C 0.306 3.694 8 O -0.438 6.438 9 C -0.111 4.111 10 C -0.185 4.185 11 C -0.110 4.110 12 C -0.262 4.262 13 C -0.137 4.137 14 C -0.214 4.214 15 C 0.094 3.906 16 C -0.510 4.510 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.454 5.454 20 Si 0.793 3.207 21 H -0.177 1.177 22 H -0.192 1.192 23 H -0.195 1.195 24 C -0.112 4.112 25 C -0.197 4.197 26 C -0.190 4.190 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.327 -4.829 -11.099 18.755 hybrid contribution -0.296 0.785 0.715 1.102 sum -14.623 -4.044 -10.384 18.385 Atomic orbital electron populations 1.22914 0.79583 1.03763 1.00767 1.87870 1.21178 1.27290 1.95556 1.22796 0.91209 0.85637 1.02074 1.21140 0.92981 0.97140 0.84186 0.90738 1.45930 1.14475 1.52000 1.24883 1.20925 0.81451 0.80392 0.86605 1.90659 1.54837 1.38552 1.59749 1.20273 0.95042 1.00939 0.94844 1.19510 0.93749 0.96232 1.08968 1.20695 0.92809 0.98633 0.98829 1.20691 0.96324 0.99406 1.09771 1.20935 0.97699 0.95692 0.99340 1.21336 0.93258 1.00599 1.06191 1.17713 0.92869 0.90694 0.89275 1.19600 0.99292 1.18655 1.13488 0.91027 1.26676 0.97653 0.99460 0.94120 1.69881 1.29369 1.34530 1.11602 0.85416 0.79201 0.77852 0.78260 1.17738 1.19187 1.19522 1.21348 0.94830 1.00126 0.94848 1.21812 1.01409 1.00711 0.95722 1.21785 0.96141 1.01036 1.00056 0.93611 0.92972 0.88555 0.92444 0.89870 0.75339 0.87699 0.88841 0.86946 0.86894 0.87818 0.88374 0.90429 0.90385 0.93033 0.91851 0.91104 0.95207 0.92563 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.34 9.62 -148.98 -1.43 -8.78 16 3 C 0.06 1.13 5.06 71.98 0.36 1.49 16 4 C 0.15 3.89 2.23 44.99 0.10 3.99 16 5 H 0.07 2.31 7.57 -2.39 -0.02 2.29 16 6 N -0.72 -20.93 5.01 -442.53 -2.22 -23.15 16 7 C 0.52 19.99 6.09 87.66 0.53 20.52 16 8 O -0.56 -26.43 12.97 -3.03 -0.04 -26.47 16 9 C -0.07 -2.81 5.18 29.10 0.15 -2.66 16 10 C -0.18 -8.96 4.43 -19.41 -0.09 -9.05 16 11 C -0.09 -4.23 9.66 22.22 0.21 -4.02 16 12 C -0.24 -11.36 10.05 22.46 0.23 -11.13 16 13 C -0.12 -5.97 10.02 22.22 0.22 -5.75 16 14 C -0.19 -10.95 8.69 22.73 0.20 -10.76 16 15 C 0.10 5.38 5.57 -21.29 -0.12 5.26 16 16 C -0.48 -26.21 8.16 23.46 0.19 -26.02 16 17 H 0.07 3.78 6.65 -2.92 -0.02 3.76 16 18 C 0.04 1.81 5.18 85.26 0.44 2.25 16 19 N -0.83 -44.44 10.88 21.83 0.24 -44.20 16 20 Si 0.97 39.38 29.59 68.60 2.03 41.41 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 C -0.09 -2.24 2.45 -10.79 -0.03 -2.26 16 25 C -0.14 -2.62 8.73 71.98 0.63 -1.99 16 26 C -0.13 -4.05 7.66 71.98 0.55 -3.50 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.25 6.68 -2.39 -0.02 1.24 16 32 H 0.41 9.94 8.39 -92.71 -0.78 9.16 16 33 H 0.10 3.39 8.05 -2.39 -0.02 3.37 16 34 H 0.09 3.67 7.05 -2.39 -0.02 3.66 16 35 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.10 5.78 6.14 -2.91 -0.02 5.76 16 39 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.08 1.89 7.67 -2.39 -0.02 1.87 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.10 6.49 -2.38 -0.02 1.09 16 44 H 0.03 1.02 6.62 -2.39 -0.02 1.01 16 45 H 0.06 1.48 8.11 -2.38 -0.02 1.47 16 46 H 0.04 1.45 7.05 -2.39 -0.02 1.43 16 Total: -1.00 -67.80 367.36 3.61 -64.19 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.19 Total: 39.03 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 4.84 Total: -42.04 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -1.98 Total: -67.35 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.47 Total: -35.24 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -67.80 3.61 -64.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776957708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.047 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds