Wall clock time and date at job start Tue Mar 31 2020 09:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35981 * 116.99973 * 2 1 4 4 C 1.38822 * 120.17671 * 179.97438 * 3 2 1 5 5 C 1.37688 * 119.93618 * 180.02562 * 4 3 2 6 6 C 1.38898 * 120.84494 * 359.70814 * 5 4 3 7 7 C 1.39227 * 118.95897 * 0.44422 * 6 5 4 8 8 C 1.50702 * 119.83783 * 179.69194 * 7 6 5 9 9 N 1.46906 * 109.47244 * 79.99987 * 8 7 6 10 10 C 1.46898 * 110.99865 * 293.95411 * 9 8 7 11 11 C 1.46902 * 110.99886 * 169.99722 * 9 8 7 12 12 H 1.08992 * 109.47046 * 309.99811 * 11 9 8 13 13 C 1.52996 * 109.46950 * 70.00178 * 11 9 8 14 14 C 1.50697 * 109.46797 * 189.99722 * 11 9 8 15 15 H 1.07997 * 120.00582 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00208 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00508 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 119.99546 * 0.02562 * 16 14 11 19 19 H 1.48497 * 109.47322 * 90.00222 * 18 16 14 20 20 H 1.48508 * 109.47212 * 210.00092 * 18 16 14 21 21 H 1.48503 * 109.47440 * 329.99889 * 18 16 14 22 22 C 1.37948 * 120.32047 * 359.69830 * 7 6 5 23 23 O 1.36231 * 111.22256 * 180.49391 * 6 5 4 24 24 C 1.43761 * 109.27341 * 341.36530 * 23 6 5 25 25 H 1.09004 * 110.74582 * 269.07400 * 24 23 6 26 26 C 1.53006 * 110.74475 * 145.91524 * 24 23 6 27 27 C 1.51657 * 132.11471 * 179.52942 * 5 4 3 28 28 H 1.09010 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47698 * 300.00092 * 1 2 3 30 30 H 1.09000 * 109.47083 * 60.00473 * 1 2 3 31 31 H 1.08008 * 120.02918 * 0.03220 * 4 3 2 32 32 H 1.09001 * 109.47023 * 199.99175 * 8 7 6 33 33 H 1.08993 * 109.47424 * 319.99986 * 8 7 6 34 34 H 1.08996 * 109.47634 * 60.00158 * 10 9 8 35 35 H 1.08999 * 109.46883 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47074 * 299.99861 * 10 9 8 37 37 H 1.09003 * 109.46915 * 180.02562 * 13 11 9 38 38 H 1.09006 * 109.47021 * 299.99647 * 13 11 9 39 39 H 1.09001 * 109.47612 * 60.00082 * 13 11 9 40 40 H 0.97002 * 120.00190 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.85978 * 179.97438 * 22 7 6 42 42 H 1.08993 * 109.47070 * 61.45493 * 26 24 23 43 43 H 1.08997 * 109.46759 * 181.45023 * 26 24 23 44 44 H 1.09000 * 109.47239 * 301.44956 * 26 24 23 45 45 H 1.08993 * 110.94230 * 77.69855 * 27 5 4 46 46 H 1.09006 * 110.94072 * 314.00968 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4324 1.2885 0.0005 5 6 4.0523 2.5180 0.0011 6 6 3.3082 3.6908 -0.0050 7 6 1.9184 3.6073 -0.0022 8 6 1.0916 4.8673 -0.0017 9 7 1.0214 5.4075 -1.3660 10 6 2.3431 5.8571 -1.8228 11 6 0.0369 6.4945 -1.4517 12 1 -0.9040 6.1682 -1.0087 13 6 0.5600 7.7172 -0.6953 14 6 -0.1873 6.8562 -2.8974 15 1 0.3476 6.3309 -3.6747 16 6 -1.0754 7.8577 -3.2277 17 7 -1.2715 8.1731 -4.4893 18 14 -2.0002 8.7668 -1.8832 19 1 -1.2116 9.9490 -1.4523 20 1 -3.3175 9.2134 -2.4034 21 1 -2.2069 7.8607 -0.7249 22 6 1.2946 2.3770 0.0002 23 8 4.1162 4.7875 -0.0142 24 6 5.4340 4.4096 0.4188 25 1 5.5331 4.5233 1.4984 26 6 6.5001 5.2297 -0.3105 27 6 5.5147 2.9196 0.0110 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0239 0.3848 0.0004 32 1 0.0855 4.6415 0.3518 33 1 1.5517 5.6035 0.6573 34 1 3.0358 5.0156 -1.8155 35 1 2.2624 6.2528 -2.8353 36 1 2.7119 6.6370 -1.1567 37 1 -0.1707 8.5235 -0.7586 38 1 0.7222 7.4555 0.3504 39 1 1.5009 8.0435 -1.1384 40 1 -1.8966 8.8775 -4.7217 41 1 0.2161 2.3209 0.0027 42 1 6.3666 6.2865 -0.0795 43 1 7.4900 4.9092 0.0139 44 1 6.4031 5.0777 -1.3855 45 1 5.9555 2.8102 -0.9799 46 1 6.0720 2.3432 0.7495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:24 Heat of formation + Delta-G solvation = -24.094307 kcal Electronic energy + Delta-G solvation = -26131.765852 eV Core-core repulsion = 22602.027465 eV Total energy + Delta-G solvation = -3529.738387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24699 -39.32409 -37.61966 -36.11362 -33.54185 -32.43137 -31.37540 -30.15467 -29.21322 -27.31300 -26.59629 -26.30779 -25.18683 -23.63658 -21.98494 -21.49420 -20.64903 -19.14070 -17.59665 -17.33128 -16.96784 -16.55255 -15.91188 -15.58153 -15.23165 -15.01486 -14.28691 -14.06238 -13.77977 -13.49254 -13.28916 -13.23095 -12.97566 -12.79297 -12.54185 -12.44827 -12.32009 -12.13600 -12.07872 -11.89405 -11.53071 -11.39868 -11.15923 -11.09892 -10.95821 -10.69961 -10.55672 -10.27608 -10.02837 -9.88511 -9.49026 -9.02159 -8.70205 -8.53391 -7.58549 -7.21634 -6.02196 -3.99484 1.31770 1.52228 3.17176 3.28241 3.37833 3.40412 3.41188 3.71993 4.39157 4.42967 4.51247 4.76711 4.85547 4.97581 5.06482 5.08891 5.15724 5.19288 5.23829 5.31041 5.36119 5.41580 5.49672 5.54172 5.64595 5.74253 5.80430 5.90988 5.97757 6.11488 6.19068 6.22450 6.33817 6.36471 6.44728 6.46045 6.51282 6.62690 6.70609 6.83797 7.04007 7.18354 7.26178 7.48783 7.68751 8.00818 8.15270 8.72058 9.06877 9.60215 11.11089 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.004708 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.625559 B = 5945.720217 C = 7421.899050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.098 3.902 4 C -0.110 4.110 5 C -0.142 4.142 6 C 0.082 3.918 7 C -0.041 4.041 8 C 0.090 3.910 9 N -0.517 5.517 10 C 0.036 3.964 11 C 0.181 3.819 12 H 0.037 0.963 13 C -0.185 4.185 14 C -0.497 4.497 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.269 1.269 22 C -0.156 4.156 23 O -0.290 6.290 24 C 0.073 3.927 25 H 0.081 0.919 26 C -0.149 4.149 27 C -0.101 4.101 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.263 0.737 41 H 0.136 0.864 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -12.916 12.717 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.053 3.947 4 C -0.129 4.129 5 C -0.143 4.143 6 C 0.037 3.963 7 C -0.042 4.042 8 C -0.038 4.038 9 N -0.240 5.240 10 C -0.112 4.112 11 C 0.073 3.927 12 H 0.055 0.945 13 C -0.243 4.243 14 C -0.535 4.535 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.225 1.225 21 H -0.194 1.194 22 C -0.175 4.175 23 O -0.205 6.205 24 C 0.017 3.983 25 H 0.099 0.901 26 C -0.206 4.206 27 C -0.138 4.138 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.608 -13.122 12.210 21.354 hybrid contribution -0.477 1.337 1.208 1.864 sum 11.131 -11.784 13.418 21.043 Atomic orbital electron populations 1.23048 0.78372 1.03627 1.01770 1.86015 1.21335 1.26600 1.89434 1.18640 0.91777 0.84179 1.00114 1.19277 0.91163 0.96647 1.05806 1.20406 0.95248 0.92922 1.05727 1.19118 0.91225 0.85592 1.00373 1.18965 0.89518 0.95519 1.00196 1.20998 0.98059 0.92213 0.92548 1.62263 1.08091 1.35190 1.18424 1.22345 0.89614 0.98357 1.00900 1.19802 0.90533 0.85156 0.97207 0.94507 1.22814 1.01787 1.01561 0.98187 1.20933 1.24333 1.18068 0.90197 0.90037 1.24908 0.96438 0.96771 0.95130 1.69880 1.36491 1.31247 1.16374 0.86893 0.78648 0.80358 0.82407 1.20833 1.22500 1.19427 1.20849 1.00207 0.90485 1.05946 1.87048 1.20225 1.30826 1.82383 1.23321 0.82775 0.93292 0.98900 0.90088 1.21868 0.96642 1.00710 1.01385 1.21835 0.93112 0.95551 1.03345 0.88498 0.92748 0.92208 0.85431 0.90731 0.94293 0.92664 0.90878 0.96162 0.93851 0.95413 0.92365 0.92715 0.84593 0.91256 0.90695 0.91281 0.89004 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.82 101.05 0.99 1.25 16 2 O -0.32 -4.13 10.50 -19.68 -0.21 -4.33 16 3 C 0.10 1.38 6.69 -39.20 -0.26 1.11 16 4 C -0.11 -1.46 9.98 -39.57 -0.39 -1.86 16 5 C -0.14 -1.91 6.26 -104.11 -0.65 -2.57 16 6 C 0.08 1.29 5.27 -38.97 -0.21 1.09 16 7 C -0.04 -0.68 5.17 -104.36 -0.54 -1.22 16 8 C 0.09 1.65 4.70 -4.97 -0.02 1.62 16 9 N -0.52 -11.25 4.69 -237.74 -1.12 -12.36 16 10 C 0.04 0.75 7.37 60.06 0.44 1.19 16 11 C 0.18 4.38 1.90 -68.87 -0.13 4.25 16 12 H 0.04 0.92 6.99 -51.93 -0.36 0.55 16 13 C -0.18 -4.17 7.92 37.16 0.29 -3.88 16 14 C -0.50 -14.15 8.49 -34.44 -0.29 -14.44 16 15 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 16 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 17 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 18 Si 0.89 22.20 24.37 -169.99 -4.14 18.06 16 19 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 20 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 22 C -0.16 -2.33 8.64 -39.53 -0.34 -2.67 16 23 O -0.29 -4.42 8.37 -20.48 -0.17 -4.59 16 24 C 0.07 0.80 4.26 -25.83 -0.11 0.69 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 C -0.15 -1.32 9.60 37.16 0.36 -0.97 16 27 C -0.10 -1.03 6.65 -26.52 -0.18 -1.20 16 28 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 33 H 0.04 0.72 7.06 -51.93 -0.37 0.35 16 34 H 0.05 1.09 4.98 -51.93 -0.26 0.83 16 35 H 0.07 1.68 6.76 -51.93 -0.35 1.33 16 36 H 0.02 0.41 6.33 -51.93 -0.33 0.08 16 37 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 38 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16 39 H 0.06 1.31 6.42 -51.93 -0.33 0.97 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.14 1.84 6.27 -52.49 -0.33 1.51 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 45 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -32.45 349.11 -7.74 -40.19 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.99 Total: 0.48 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.14 Total: -15.69 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.34 Total: -39.38 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.38 Total: -8.92 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.45 -7.74 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.092 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds