Wall clock time and date at job start Tue Mar 31 2020 09:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35981 * 116.99973 * 2 1 4 4 C 1.38822 * 120.17671 * 179.97438 * 3 2 1 5 5 C 1.37688 * 119.93618 * 180.02562 * 4 3 2 6 6 C 1.38898 * 120.84494 * 359.70814 * 5 4 3 7 7 C 1.39227 * 118.95897 * 0.44422 * 6 5 4 8 8 C 1.50702 * 119.83783 * 179.69194 * 7 6 5 9 9 N 1.46906 * 109.47244 * 79.99987 * 8 7 6 10 10 C 1.46898 * 110.99865 * 293.95411 * 9 8 7 11 11 C 1.46902 * 110.99886 * 169.99722 * 9 8 7 12 12 H 1.08992 * 109.47046 * 309.99811 * 11 9 8 13 13 C 1.52996 * 109.46950 * 70.00178 * 11 9 8 14 14 C 1.50697 * 109.46797 * 189.99722 * 11 9 8 15 15 H 1.07997 * 120.00582 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00208 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00508 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 119.99546 * 0.02562 * 16 14 11 19 19 H 1.48497 * 109.47322 * 90.00222 * 18 16 14 20 20 H 1.48508 * 109.47212 * 210.00092 * 18 16 14 21 21 H 1.48503 * 109.47440 * 329.99889 * 18 16 14 22 22 C 1.37948 * 120.32047 * 359.69830 * 7 6 5 23 23 O 1.36231 * 111.22256 * 180.49391 * 6 5 4 24 24 C 1.43761 * 109.27341 * 341.36530 * 23 6 5 25 25 H 1.09004 * 110.74582 * 269.07400 * 24 23 6 26 26 C 1.53006 * 110.74475 * 145.91524 * 24 23 6 27 27 C 1.51657 * 132.11471 * 179.52942 * 5 4 3 28 28 H 1.09010 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47698 * 300.00092 * 1 2 3 30 30 H 1.09000 * 109.47083 * 60.00473 * 1 2 3 31 31 H 1.08008 * 120.02918 * 0.03220 * 4 3 2 32 32 H 1.09001 * 109.47023 * 199.99175 * 8 7 6 33 33 H 1.08993 * 109.47424 * 319.99986 * 8 7 6 34 34 H 1.08996 * 109.47634 * 60.00158 * 10 9 8 35 35 H 1.08999 * 109.46883 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47074 * 299.99861 * 10 9 8 37 37 H 1.09003 * 109.46915 * 180.02562 * 13 11 9 38 38 H 1.09006 * 109.47021 * 299.99647 * 13 11 9 39 39 H 1.09001 * 109.47612 * 60.00082 * 13 11 9 40 40 H 0.97002 * 120.00190 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.85978 * 179.97438 * 22 7 6 42 42 H 1.08993 * 109.47070 * 61.45493 * 26 24 23 43 43 H 1.08997 * 109.46759 * 181.45023 * 26 24 23 44 44 H 1.09000 * 109.47239 * 301.44956 * 26 24 23 45 45 H 1.08993 * 110.94230 * 77.69855 * 27 5 4 46 46 H 1.09006 * 110.94072 * 314.00968 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4324 1.2885 0.0005 5 6 4.0523 2.5180 0.0011 6 6 3.3082 3.6908 -0.0050 7 6 1.9184 3.6073 -0.0022 8 6 1.0916 4.8673 -0.0017 9 7 1.0214 5.4075 -1.3660 10 6 2.3431 5.8571 -1.8228 11 6 0.0369 6.4945 -1.4517 12 1 -0.9040 6.1682 -1.0087 13 6 0.5600 7.7172 -0.6953 14 6 -0.1873 6.8562 -2.8974 15 1 0.3476 6.3309 -3.6747 16 6 -1.0754 7.8577 -3.2277 17 7 -1.2715 8.1731 -4.4893 18 14 -2.0002 8.7668 -1.8832 19 1 -1.2116 9.9490 -1.4523 20 1 -3.3175 9.2134 -2.4034 21 1 -2.2069 7.8607 -0.7249 22 6 1.2946 2.3770 0.0002 23 8 4.1162 4.7875 -0.0142 24 6 5.4340 4.4096 0.4188 25 1 5.5331 4.5233 1.4984 26 6 6.5001 5.2297 -0.3105 27 6 5.5147 2.9196 0.0110 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0239 0.3848 0.0004 32 1 0.0855 4.6415 0.3518 33 1 1.5517 5.6035 0.6573 34 1 3.0358 5.0156 -1.8155 35 1 2.2624 6.2528 -2.8353 36 1 2.7119 6.6370 -1.1567 37 1 -0.1707 8.5235 -0.7586 38 1 0.7222 7.4555 0.3504 39 1 1.5009 8.0435 -1.1384 40 1 -1.8966 8.8775 -4.7217 41 1 0.2161 2.3209 0.0027 42 1 6.3666 6.2865 -0.0795 43 1 7.4900 4.9092 0.0139 44 1 6.4031 5.0777 -1.3855 45 1 5.9555 2.8102 -0.9799 46 1 6.0720 2.3432 0.7495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:24 Heat of formation + Delta-G solvation = -46.135458 kcal Electronic energy + Delta-G solvation = -26132.721628 eV Core-core repulsion = 22602.027465 eV Total energy + Delta-G solvation = -3530.694163 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.27773 -40.29503 -39.24177 -37.25158 -35.04147 -34.02248 -32.58769 -31.42576 -30.64056 -28.46667 -27.72124 -27.35768 -27.19638 -25.25764 -22.94604 -22.45861 -21.96173 -20.85199 -18.77020 -18.52867 -18.32084 -17.96653 -17.29133 -16.78367 -16.46346 -16.28247 -15.79270 -15.60370 -15.15530 -14.84637 -14.56229 -14.30219 -14.14067 -14.10340 -13.93037 -13.83385 -13.38488 -13.36051 -13.17427 -13.00140 -12.90944 -12.85429 -12.63416 -12.40847 -12.21414 -12.11399 -12.00316 -11.86671 -11.54004 -11.43464 -11.17113 -10.98191 -10.75801 -9.80509 -8.97318 -8.60249 -8.27224 -6.29808 0.23297 0.42176 1.29500 1.34624 1.45180 2.24589 2.31950 2.46668 2.62880 3.06582 3.41688 3.50651 3.64585 3.77766 3.96222 4.07728 4.15059 4.28900 4.32431 4.38877 4.42634 4.43542 4.45469 4.51224 4.58482 4.66822 4.69239 4.74235 4.75862 4.78645 4.83280 4.83611 4.92989 4.99520 5.07733 5.19969 5.26018 5.27586 5.32164 5.40608 5.44628 5.57215 5.63041 6.03633 6.19209 6.37662 6.48350 6.69197 6.75661 7.34335 8.89908 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.004708 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.625559 B = 5945.720217 C = 7421.899050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.093 3.907 4 C -0.110 4.110 5 C -0.141 4.141 6 C 0.065 3.935 7 C -0.067 4.067 8 C 0.096 3.904 9 N -0.533 5.533 10 C 0.054 3.946 11 C 0.184 3.816 12 H 0.037 0.963 13 C -0.178 4.178 14 C -0.501 4.501 15 H 0.035 0.965 16 C 0.012 3.988 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.269 1.269 20 H -0.297 1.297 21 H -0.247 1.247 22 C -0.164 4.164 23 O -0.316 6.316 24 C 0.065 3.935 25 H 0.095 0.905 26 C -0.145 4.145 27 C -0.094 4.094 28 H 0.124 0.876 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.143 0.857 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.857 -13.993 15.360 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.048 3.952 4 C -0.129 4.129 5 C -0.142 4.142 6 C 0.019 3.981 7 C -0.069 4.069 8 C -0.031 4.031 9 N -0.256 5.256 10 C -0.094 4.094 11 C 0.076 3.924 12 H 0.055 0.945 13 C -0.236 4.236 14 C -0.539 4.539 15 H 0.053 0.947 16 C -0.185 4.185 17 N -0.590 5.590 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.224 1.224 21 H -0.171 1.171 22 C -0.183 4.183 23 O -0.232 6.232 24 C 0.010 3.990 25 H 0.113 0.887 26 C -0.202 4.202 27 C -0.131 4.131 28 H 0.142 0.858 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.118 0.882 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.651 -14.221 14.874 24.156 hybrid contribution -0.713 1.530 0.333 1.721 sum 11.938 -12.690 15.207 23.126 Atomic orbital electron populations 1.23298 0.76797 1.05513 1.01888 1.86011 1.22992 1.25939 1.89228 1.18802 0.92335 0.84311 0.99791 1.19622 0.91155 0.97530 1.04601 1.20796 0.96933 0.92199 1.04307 1.19316 0.91236 0.86687 1.00833 1.18924 0.90081 0.95121 1.02744 1.20956 0.99005 0.92990 0.90139 1.62140 1.07810 1.34299 1.21317 1.22121 0.89708 0.98719 0.98875 1.19609 0.91502 0.86804 0.94490 0.94514 1.22672 1.01143 1.00233 0.99598 1.21128 1.23573 1.17491 0.91704 0.94711 1.25757 0.97469 0.97748 0.97496 1.70037 1.37767 1.32365 1.18869 0.85837 0.77070 0.79509 0.79833 1.19579 1.22427 1.17141 1.20940 1.00734 0.90462 1.06178 1.86998 1.21980 1.31459 1.82720 1.23657 0.81289 0.94150 0.99942 0.88735 1.21894 0.97627 1.00119 1.00577 1.21930 0.91266 0.95127 1.04776 0.85797 0.91826 0.92887 0.83143 0.90010 0.94332 0.91528 0.94256 0.95750 0.94324 0.92481 0.92992 0.92556 0.83982 0.91990 0.87588 0.92344 0.88191 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.82 113.37 1.11 1.45 16 2 O -0.33 -7.89 10.50 -93.34 -0.98 -8.87 16 3 C 0.09 2.48 6.69 22.51 0.15 2.63 16 4 C -0.11 -2.69 9.98 22.28 0.22 -2.47 16 5 C -0.14 -3.52 6.26 -19.53 -0.12 -3.65 16 6 C 0.06 1.97 5.27 22.67 0.12 2.09 16 7 C -0.07 -2.21 5.17 -19.69 -0.10 -2.31 16 8 C 0.10 3.48 4.70 85.56 0.40 3.89 16 9 N -0.53 -23.42 4.69 -906.07 -4.25 -27.67 16 10 C 0.05 2.31 7.37 127.69 0.94 3.25 16 11 C 0.18 8.93 1.90 44.17 0.08 9.01 16 12 H 0.04 1.79 6.99 -2.39 -0.02 1.78 16 13 C -0.18 -7.78 7.92 71.98 0.57 -7.21 16 14 C -0.50 -29.46 8.49 25.60 0.22 -29.24 16 15 H 0.03 2.31 7.37 -2.91 -0.02 2.29 16 16 C 0.01 0.72 5.45 84.66 0.46 1.18 16 17 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 18 Si 0.95 45.58 24.37 68.60 1.67 47.26 16 19 H -0.27 -12.37 6.87 99.48 0.68 -11.69 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.25 -10.94 6.53 99.48 0.65 -10.29 16 22 C -0.16 -4.79 8.64 22.31 0.19 -4.60 16 23 O -0.32 -9.32 8.37 -96.19 -0.80 -10.13 16 24 C 0.06 1.27 4.26 31.18 0.13 1.40 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 C -0.15 -2.29 9.60 71.98 0.69 -1.60 16 27 C -0.09 -1.63 6.65 30.73 0.20 -1.42 16 28 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.05 1.00 7.67 -2.39 -0.02 0.98 16 31 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.08 2.76 7.78 -2.39 -0.02 2.74 16 33 H 0.04 1.38 7.06 -2.39 -0.02 1.37 16 34 H 0.07 2.68 4.98 -2.39 -0.01 2.67 16 35 H 0.04 1.91 6.76 -2.39 -0.02 1.89 16 36 H 0.02 1.00 6.33 -2.39 -0.02 0.99 16 37 H 0.04 1.72 3.27 -2.39 -0.01 1.71 16 38 H 0.06 2.15 6.91 -2.38 -0.02 2.13 16 39 H 0.05 2.30 6.42 -2.39 -0.02 2.29 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.14 3.79 6.27 -2.91 -0.02 3.77 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 45 H 0.10 1.60 7.90 -2.39 -0.02 1.58 16 46 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -72.24 349.11 2.11 -70.13 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.90 Total: 17.05 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 5.28 Total: -27.59 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.95 Total: -87.85 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.79 Total: -19.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.26 kcal Total: -72.24 2.11 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.998 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds