Wall clock time and date at job start Tue Mar 31 2020 09:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.50699 * 109.47164 * 240.00137 * 2 1 3 5 5 C 1.38227 * 120.00332 * 311.66582 * 4 2 1 6 6 C 1.38231 * 120.00426 * 179.78876 * 5 4 2 7 7 C 1.38239 * 119.99935 * 0.44154 * 6 5 4 8 8 C 1.38236 * 119.99650 * 359.80627 * 7 6 5 9 9 C 1.38232 * 120.00312 * 359.97438 * 8 7 6 10 10 C 1.53000 * 109.47128 * 120.00208 * 2 1 3 11 11 C 1.52993 * 109.47109 * 299.20959 * 10 2 1 12 12 O 1.42899 * 109.47411 * 59.21381 * 10 2 1 13 13 C 1.50702 * 109.47126 * 179.21146 * 10 2 1 14 14 O 1.21283 * 119.99967 * 25.29638 * 13 10 2 15 15 N 1.34777 * 120.00162 * 205.28935 * 13 10 2 16 16 C 1.46502 * 120.00053 * 179.97438 * 15 13 10 17 17 C 1.52999 * 109.46792 * 180.02562 * 16 15 13 18 18 C 1.53009 * 109.46836 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46841 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00403 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99603 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99971 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47034 * 90.00110 * 23 21 19 25 25 H 1.48503 * 109.46896 * 210.00053 * 23 21 19 26 26 H 1.48496 * 109.47110 * 330.00179 * 23 21 19 27 27 H 1.09003 * 109.47294 * 61.12156 * 1 2 3 28 28 H 1.09000 * 109.47394 * 301.11565 * 1 2 3 29 29 H 1.08999 * 109.46923 * 181.11984 * 1 2 3 30 30 H 1.08007 * 119.99966 * 359.97438 * 5 4 2 31 31 H 1.08004 * 120.00255 * 180.27020 * 6 5 4 32 32 H 1.08000 * 120.00008 * 179.83857 * 7 6 5 33 33 H 1.07999 * 119.99988 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.00190 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.47356 * 66.48330 * 11 10 2 36 36 H 1.09003 * 109.47344 * 186.47911 * 11 10 2 37 37 H 1.09000 * 109.47484 * 306.48093 * 11 10 2 38 38 H 0.96704 * 113.99800 * 68.81577 * 12 10 2 39 39 H 0.97001 * 119.99691 * 0.02562 * 15 13 10 40 40 H 1.08996 * 109.47439 * 300.00385 * 16 15 13 41 41 H 1.09003 * 109.46959 * 60.00470 * 16 15 13 42 42 H 1.09007 * 109.47133 * 299.99734 * 17 16 15 43 43 H 1.08993 * 109.47168 * 60.00302 * 17 16 15 44 44 H 1.09004 * 109.46848 * 300.00064 * 18 17 16 45 45 H 1.09003 * 109.47308 * 59.99899 * 18 17 16 46 46 H 0.96994 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.5124 -1.9433 -1.5775 6 6 1.9701 -2.5929 -2.7085 7 6 2.9542 -2.0137 -3.4877 8 6 3.4778 -0.7831 -3.1378 9 6 3.0169 -0.1314 -2.0093 10 6 2.0399 -0.7213 1.2492 11 6 1.5463 0.0113 2.4983 12 8 1.5486 -2.0631 1.2585 13 6 3.5468 -0.7382 1.2395 14 8 4.1590 0.1157 0.6336 15 7 4.2143 -1.7022 1.9041 16 6 5.6792 -1.7190 1.8942 17 6 6.1811 -2.9071 2.7173 18 6 7.7111 -2.9242 2.7074 19 6 8.2054 -4.0948 3.5176 20 1 7.4992 -4.7597 3.9925 21 6 9.5595 -4.3168 3.6527 22 7 9.9911 -5.3381 4.3602 23 14 10.7811 -3.1672 2.8308 24 1 11.1219 -2.0604 3.7604 25 1 12.0135 -3.9200 2.4845 26 1 10.1791 -2.6072 1.5942 27 1 -0.3634 0.4963 -0.8999 28 1 -0.3634 0.5311 0.8798 29 1 -0.3633 -1.0275 0.0201 30 1 0.7465 -2.3977 -0.9665 31 1 1.5608 -3.5542 -2.9821 32 1 3.3136 -2.5225 -4.3699 33 1 4.2463 -0.3304 -3.7467 34 1 3.4262 0.8299 -1.7357 35 1 0.4618 -0.0756 2.5658 36 1 2.0020 -0.4323 3.3836 37 1 1.8233 1.0636 2.4357 38 1 1.9289 -2.6260 0.5702 39 1 3.7246 -2.3853 2.3885 40 1 6.0345 -1.8123 0.8680 41 1 6.0561 -0.7920 2.3263 42 1 5.8257 -2.8141 3.7436 43 1 5.8042 -3.8338 2.2848 44 1 8.0667 -3.0169 1.6812 45 1 8.0876 -1.9974 3.1402 46 1 10.9436 -5.4941 4.4555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176227792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:39 Heat of formation + Delta-G solvation = -81.797224 kcal Electronic energy + Delta-G solvation = -25464.403720 eV Core-core repulsion = 21932.163146 eV Total energy + Delta-G solvation = -3532.240573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92882 -39.03224 -37.30743 -35.62959 -34.09987 -33.20545 -31.58856 -31.13606 -30.94782 -28.90062 -27.28068 -25.52089 -23.45422 -22.64199 -22.25816 -20.93520 -20.46874 -19.82324 -18.11198 -17.12166 -16.79391 -16.35233 -15.79565 -15.65751 -15.37486 -14.71183 -14.48684 -14.41064 -13.99510 -13.89769 -13.37947 -13.30489 -12.96692 -12.79379 -12.71951 -12.66362 -12.46616 -12.11453 -12.01527 -11.96464 -11.90905 -11.62245 -11.34382 -11.08702 -10.93701 -10.90577 -10.43538 -10.16370 -9.95698 -9.77400 -9.40620 -9.23787 -9.02588 -8.89837 -8.75674 -8.56723 -6.07385 -4.06115 1.20021 1.30628 2.59851 3.16720 3.29925 3.37516 3.41654 3.63315 3.89230 4.33275 4.43160 4.52481 4.59503 4.78338 4.89244 4.96738 5.05868 5.14396 5.22429 5.26574 5.34893 5.43907 5.45188 5.48236 5.55531 5.63061 5.63910 5.68275 5.86579 5.91286 5.97503 5.99217 6.01205 6.32496 6.34981 6.42500 6.42929 6.53501 6.66900 6.77320 6.89523 7.12227 7.21054 7.34462 7.62113 7.75394 8.25926 8.49392 8.96585 9.54810 11.05891 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.003301 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.390659 B = 8481.482441 C = 9236.388093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 H 0.095 0.905 4 C -0.085 4.085 5 C -0.130 4.130 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.121 4.121 9 C -0.089 4.089 10 C 0.128 3.872 11 C -0.139 4.139 12 O -0.548 6.548 13 C 0.484 3.516 14 O -0.533 6.533 15 N -0.718 5.718 16 C 0.114 3.886 17 C -0.113 4.113 18 C -0.010 4.010 19 C -0.522 4.522 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.903 5.903 23 Si 0.879 3.121 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.380 0.620 39 H 0.403 0.597 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.018 0.982 45 H 0.014 0.986 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.512 10.347 -12.040 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 H 0.113 0.887 4 C -0.085 4.085 5 C -0.148 4.148 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.107 4.107 10 C 0.084 3.916 11 C -0.196 4.196 12 O -0.356 6.356 13 C 0.269 3.731 14 O -0.410 6.410 15 N -0.369 5.369 16 C -0.009 4.009 17 C -0.151 4.151 18 C -0.048 4.048 19 C -0.560 4.560 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.542 5.542 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.230 0.770 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.032 0.968 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.225 11.087 -11.911 26.745 hybrid contribution 1.079 -0.108 -0.624 1.251 sum -20.146 10.980 -12.534 26.144 Atomic orbital electron populations 1.21825 0.93191 1.02866 1.01867 1.20591 0.96673 1.00062 0.90782 0.88689 1.19772 0.97155 0.95149 0.96448 1.21166 1.00744 0.95172 0.97669 1.21127 0.97625 0.99924 0.95351 1.21173 0.97169 0.95761 0.99909 1.21193 0.99851 0.95541 0.97323 1.21151 0.95336 1.00390 0.93810 1.21443 0.89024 0.84300 0.96860 1.21792 1.02904 0.99923 0.94976 1.86549 1.69418 1.20789 1.58850 1.21252 0.90496 0.82173 0.79227 1.90677 1.69690 1.37792 1.42834 1.46180 1.08376 1.30033 1.52353 1.21659 0.77756 1.00332 1.01105 1.21705 0.99276 0.95403 0.98725 1.19500 0.90529 0.97516 0.97285 1.21095 0.92666 1.10803 1.31436 0.90988 1.25028 0.98482 0.95148 0.94794 1.69909 1.14703 1.29024 1.40525 0.86781 0.80778 0.81116 0.80659 1.20232 1.21334 1.18947 0.92385 0.91995 0.91539 0.85412 0.86114 0.86288 0.86208 0.85683 0.90209 0.91196 0.90422 0.77023 0.76169 0.91884 0.91820 0.92097 0.92095 0.96379 0.96794 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.34 37.15 0.31 -0.79 16 2 C -0.06 -0.61 1.69 -91.78 -0.16 -0.76 16 3 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 4 C -0.09 -0.92 3.95 -104.62 -0.41 -1.34 16 5 C -0.13 -1.25 7.29 -39.59 -0.29 -1.54 16 6 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 7 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 8 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 9 C -0.09 -1.06 8.44 -39.58 -0.33 -1.40 16 10 C 0.13 1.33 0.75 -91.77 -0.07 1.26 16 11 C -0.14 -1.25 8.30 37.15 0.31 -0.94 16 12 O -0.55 -5.37 10.80 -35.23 -0.38 -5.75 16 13 C 0.48 6.65 6.00 -10.98 -0.07 6.59 16 14 O -0.53 -8.86 14.42 5.56 0.08 -8.78 16 15 N -0.72 -9.93 5.47 -60.29 -0.33 -10.26 16 16 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 17 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 18 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 19 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 20 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 21 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 22 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 23 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 6.66 -51.93 -0.35 0.07 16 29 H 0.07 0.52 6.37 -51.93 -0.33 0.19 16 30 H 0.13 1.03 5.79 -52.48 -0.30 0.73 16 31 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.54 7.71 -52.49 -0.40 1.14 16 35 H 0.08 0.60 6.83 -51.93 -0.35 0.25 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.38 3.47 6.38 45.56 0.29 3.76 16 39 H 0.40 4.88 7.90 -40.82 -0.32 4.56 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 45 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -32.30 365.44 -8.38 -40.68 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.75 Total: 6.36 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -2.61 Total: -17.86 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.44 Total: -37.28 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.30 Total: -14.52 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.30 -8.38 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176227792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.121 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds