Wall clock time and date at job start Tue Mar 31 2020 09:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.50699 * 109.47164 * 240.00137 * 2 1 3 5 5 C 1.38227 * 120.00332 * 311.66582 * 4 2 1 6 6 C 1.38231 * 120.00426 * 179.78876 * 5 4 2 7 7 C 1.38239 * 119.99935 * 0.44154 * 6 5 4 8 8 C 1.38236 * 119.99650 * 359.80627 * 7 6 5 9 9 C 1.38232 * 120.00312 * 359.97438 * 8 7 6 10 10 C 1.53000 * 109.47128 * 120.00208 * 2 1 3 11 11 C 1.52993 * 109.47109 * 299.20959 * 10 2 1 12 12 O 1.42899 * 109.47411 * 59.21381 * 10 2 1 13 13 C 1.50702 * 109.47126 * 179.21146 * 10 2 1 14 14 O 1.21283 * 119.99967 * 25.29638 * 13 10 2 15 15 N 1.34777 * 120.00162 * 205.28935 * 13 10 2 16 16 C 1.46502 * 120.00053 * 179.97438 * 15 13 10 17 17 C 1.52999 * 109.46792 * 180.02562 * 16 15 13 18 18 C 1.53009 * 109.46836 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46841 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00403 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99603 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99971 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47034 * 90.00110 * 23 21 19 25 25 H 1.48503 * 109.46896 * 210.00053 * 23 21 19 26 26 H 1.48496 * 109.47110 * 330.00179 * 23 21 19 27 27 H 1.09003 * 109.47294 * 61.12156 * 1 2 3 28 28 H 1.09000 * 109.47394 * 301.11565 * 1 2 3 29 29 H 1.08999 * 109.46923 * 181.11984 * 1 2 3 30 30 H 1.08007 * 119.99966 * 359.97438 * 5 4 2 31 31 H 1.08004 * 120.00255 * 180.27020 * 6 5 4 32 32 H 1.08000 * 120.00008 * 179.83857 * 7 6 5 33 33 H 1.07999 * 119.99988 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.00190 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.47356 * 66.48330 * 11 10 2 36 36 H 1.09003 * 109.47344 * 186.47911 * 11 10 2 37 37 H 1.09000 * 109.47484 * 306.48093 * 11 10 2 38 38 H 0.96704 * 113.99800 * 68.81577 * 12 10 2 39 39 H 0.97001 * 119.99691 * 0.02562 * 15 13 10 40 40 H 1.08996 * 109.47439 * 300.00385 * 16 15 13 41 41 H 1.09003 * 109.46959 * 60.00470 * 16 15 13 42 42 H 1.09007 * 109.47133 * 299.99734 * 17 16 15 43 43 H 1.08993 * 109.47168 * 60.00302 * 17 16 15 44 44 H 1.09004 * 109.46848 * 300.00064 * 18 17 16 45 45 H 1.09003 * 109.47308 * 59.99899 * 18 17 16 46 46 H 0.96994 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.5124 -1.9433 -1.5775 6 6 1.9701 -2.5929 -2.7085 7 6 2.9542 -2.0137 -3.4877 8 6 3.4778 -0.7831 -3.1378 9 6 3.0169 -0.1314 -2.0093 10 6 2.0399 -0.7213 1.2492 11 6 1.5463 0.0113 2.4983 12 8 1.5486 -2.0631 1.2585 13 6 3.5468 -0.7382 1.2395 14 8 4.1590 0.1157 0.6336 15 7 4.2143 -1.7022 1.9041 16 6 5.6792 -1.7190 1.8942 17 6 6.1811 -2.9071 2.7173 18 6 7.7111 -2.9242 2.7074 19 6 8.2054 -4.0948 3.5176 20 1 7.4992 -4.7597 3.9925 21 6 9.5595 -4.3168 3.6527 22 7 9.9911 -5.3381 4.3602 23 14 10.7811 -3.1672 2.8308 24 1 11.1219 -2.0604 3.7604 25 1 12.0135 -3.9200 2.4845 26 1 10.1791 -2.6072 1.5942 27 1 -0.3634 0.4963 -0.8999 28 1 -0.3634 0.5311 0.8798 29 1 -0.3633 -1.0275 0.0201 30 1 0.7465 -2.3977 -0.9665 31 1 1.5608 -3.5542 -2.9821 32 1 3.3136 -2.5225 -4.3699 33 1 4.2463 -0.3304 -3.7467 34 1 3.4262 0.8299 -1.7357 35 1 0.4618 -0.0756 2.5658 36 1 2.0020 -0.4323 3.3836 37 1 1.8233 1.0636 2.4357 38 1 1.9289 -2.6260 0.5702 39 1 3.7246 -2.3853 2.3885 40 1 6.0345 -1.8123 0.8680 41 1 6.0561 -0.7920 2.3263 42 1 5.8257 -2.8141 3.7436 43 1 5.8042 -3.8338 2.2848 44 1 8.0667 -3.0169 1.6812 45 1 8.0876 -1.9974 3.1402 46 1 10.9436 -5.4941 4.4555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176227792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:39 Heat of formation + Delta-G solvation = -102.940519 kcal Electronic energy + Delta-G solvation = -25465.320562 eV Core-core repulsion = 21932.163146 eV Total energy + Delta-G solvation = -3533.157415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85045 -39.95525 -38.21543 -37.03779 -35.29759 -34.67205 -33.25887 -32.04159 -31.73933 -29.73634 -28.87646 -26.39795 -24.88569 -23.53263 -23.23000 -22.26091 -21.76713 -20.75689 -19.25935 -18.81241 -17.88251 -17.28855 -16.95405 -16.71095 -16.32366 -16.27391 -15.75708 -15.43662 -15.18057 -14.83547 -14.79510 -14.30862 -14.14392 -13.83736 -13.80456 -13.56697 -13.49460 -13.40344 -13.18813 -12.85745 -12.76788 -12.71738 -12.66303 -12.35920 -12.12403 -11.93147 -11.80081 -11.66289 -11.62545 -11.35793 -11.20237 -10.77891 -10.53377 -10.12248 -9.80230 -9.58015 -8.30864 -6.34919 0.41838 0.50787 1.35189 1.36812 1.48545 1.51866 2.08445 2.34713 2.84396 3.04695 3.09986 3.51325 3.67591 3.75404 4.00080 4.07658 4.14784 4.16423 4.22890 4.32481 4.40924 4.46684 4.52667 4.61729 4.73582 4.74690 4.78993 4.84698 4.87827 4.97654 5.00115 5.03106 5.13730 5.18167 5.25268 5.36066 5.38692 5.46519 5.52325 5.58293 5.63083 5.63983 5.74798 6.12798 6.25639 6.28613 6.59514 6.73067 7.17540 7.29913 8.85633 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.003301 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.390659 B = 8481.482441 C = 9236.388093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 H 0.083 0.917 4 C -0.094 4.094 5 C -0.129 4.129 6 C -0.125 4.125 7 C -0.131 4.131 8 C -0.137 4.137 9 C -0.112 4.112 10 C 0.138 3.862 11 C -0.140 4.140 12 O -0.543 6.543 13 C 0.481 3.519 14 O -0.563 6.563 15 N -0.713 5.713 16 C 0.129 3.871 17 C -0.100 4.100 18 C -0.011 4.011 19 C -0.531 4.531 20 H 0.037 0.963 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.947 3.053 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.249 1.249 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.383 0.617 39 H 0.413 0.587 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.987 10.972 -12.863 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.078 4.078 3 H 0.101 0.899 4 C -0.094 4.094 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.149 4.149 8 C -0.155 4.155 9 C -0.130 4.130 10 C 0.094 3.906 11 C -0.197 4.197 12 O -0.352 6.352 13 C 0.267 3.733 14 O -0.442 6.442 15 N -0.365 5.365 16 C 0.005 3.995 17 C -0.138 4.138 18 C -0.049 4.049 19 C -0.569 4.569 20 H 0.055 0.945 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.771 3.229 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.173 1.173 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.736 11.708 -12.731 28.568 hybrid contribution 1.491 -0.368 -0.350 1.576 sum -21.245 11.341 -13.081 27.406 Atomic orbital electron populations 1.21807 0.91306 1.03404 1.02688 1.20584 0.98066 0.99153 0.90028 0.89872 1.19934 0.96984 0.95769 0.96681 1.21382 1.00826 0.94618 0.97881 1.21481 0.97098 1.00740 0.94982 1.21456 0.97324 0.95458 1.00694 1.21389 1.00395 0.96277 0.97425 1.21193 0.96521 1.00383 0.94921 1.21392 0.86328 0.84936 0.97960 1.21857 1.04137 0.99831 0.93884 1.86559 1.69073 1.20458 1.59085 1.21935 0.91992 0.81238 0.78122 1.90671 1.70672 1.38903 1.43941 1.46048 1.07193 1.30612 1.52672 1.21273 0.79549 0.98803 0.99880 1.21478 0.96268 0.96586 0.99463 1.19454 0.93655 0.95521 0.96224 1.21452 0.92381 1.11655 1.31440 0.94451 1.25979 1.00776 0.96861 0.95532 1.70054 1.15359 1.31191 1.42418 0.85704 0.78057 0.78990 0.80194 1.19170 1.20904 1.17293 0.92129 0.90671 0.91069 0.83557 0.83773 0.84553 0.85631 0.87189 0.88222 0.91436 0.90140 0.76604 0.74999 0.92791 0.92387 0.91801 0.91873 0.96238 0.96245 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.34 71.98 0.60 -1.18 16 2 C -0.06 -1.08 1.69 -11.54 -0.02 -1.10 16 3 H 0.08 1.72 7.68 -2.39 -0.02 1.70 16 4 C -0.09 -1.94 3.95 -19.87 -0.08 -2.02 16 5 C -0.13 -2.24 7.29 22.27 0.16 -2.08 16 6 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 7 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 8 C -0.14 -3.03 10.05 22.27 0.22 -2.80 16 9 C -0.11 -2.71 8.44 22.27 0.19 -2.52 16 10 C 0.14 2.63 0.75 -11.54 -0.01 2.62 16 11 C -0.14 -2.20 8.30 71.98 0.60 -1.60 16 12 O -0.54 -9.25 10.80 -148.98 -1.61 -10.86 16 13 C 0.48 12.72 6.00 87.66 0.53 13.24 16 14 O -0.56 -18.60 14.42 -3.04 -0.04 -18.65 16 15 N -0.71 -18.79 5.47 -463.05 -2.53 -21.32 16 16 C 0.13 4.14 5.67 86.38 0.49 4.63 16 17 C -0.10 -3.67 5.27 30.60 0.16 -3.51 16 18 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 19 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 20 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 21 C 0.01 0.32 5.47 84.66 0.46 0.78 16 22 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 23 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 26 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.80 6.66 -2.39 -0.02 0.78 16 29 H 0.07 0.89 6.37 -2.39 -0.02 0.87 16 30 H 0.15 1.92 5.79 -2.91 -0.02 1.91 16 31 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.11 2.88 7.71 -2.91 -0.02 2.86 16 35 H 0.10 1.19 6.83 -2.39 -0.02 1.17 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.38 6.04 6.38 -74.05 -0.47 5.57 16 39 H 0.41 9.28 7.90 -92.71 -0.73 8.54 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 45 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -69.96 365.44 1.84 -68.12 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.28 Total: 25.66 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.12 Total: -30.19 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.23 Total: -80.49 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.65 Total: -29.50 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -69.96 1.84 -68.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176227792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.824 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds