Wall clock time and date at job start Tue Mar 31 2020 09:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99841 * 2 1 4 4 C 1.53003 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47400 * 183.86771 * 4 3 2 6 6 N 1.46894 * 109.46840 * 63.86580 * 4 3 2 7 7 C 1.46904 * 110.99790 * 155.00084 * 6 4 3 8 8 H 1.09001 * 109.46993 * 35.00486 * 7 6 4 9 9 C 1.53002 * 109.47174 * 275.00121 * 7 6 4 10 10 C 1.50698 * 109.47272 * 154.99751 * 7 6 4 11 11 C 1.38310 * 119.92579 * 39.73061 * 10 7 6 12 12 C 1.38100 * 120.06670 * 179.72358 * 11 10 7 13 13 C 1.38883 * 119.92885 * 0.54951 * 12 11 10 14 14 O 1.35756 * 120.07062 * 179.74860 * 13 12 11 15 15 C 1.34819 * 117.00115 * 185.50323 * 14 13 12 16 16 H 1.07998 * 120.00374 * 354.93909 * 15 14 13 17 17 C 1.38654 * 119.99986 * 174.93598 * 15 14 13 18 18 N 1.31562 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47129 * 120.00024 * 19 17 15 22 22 H 1.48503 * 109.46894 * 239.99827 * 19 17 15 23 23 C 1.38875 * 119.86488 * 359.72205 * 13 12 11 24 24 C 1.38105 * 119.92924 * 0.02562 * 23 13 12 25 25 C 1.53004 * 109.47031 * 303.86761 * 4 3 2 26 26 C 1.52997 * 117.49810 * 133.43763 * 25 4 3 27 27 C 1.53001 * 117.49882 * 64.81320 * 25 4 3 28 28 H 1.09003 * 109.46719 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47121 * 299.99865 * 1 2 3 30 30 H 1.09004 * 109.47009 * 59.99999 * 1 2 3 31 31 H 1.08995 * 109.47490 * 300.00145 * 3 2 1 32 32 H 1.09004 * 109.46890 * 59.99717 * 3 2 1 33 33 H 1.00902 * 111.00324 * 278.95510 * 6 4 3 34 34 H 1.09003 * 109.46752 * 179.97438 * 9 7 6 35 35 H 1.09003 * 109.46957 * 299.99944 * 9 7 6 36 36 H 1.08999 * 109.46720 * 60.00186 * 9 7 6 37 37 H 1.07992 * 119.96894 * 359.97438 * 11 10 7 38 38 H 1.08002 * 120.03801 * 180.27109 * 12 11 10 39 39 H 0.97003 * 119.99442 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.03629 * 179.97438 * 23 13 12 41 41 H 1.07999 * 119.96428 * 180.02562 * 24 23 13 42 42 H 1.09003 * 115.55183 * 279.14684 * 25 4 3 43 43 H 1.08998 * 117.50026 * 359.97438 * 26 25 4 44 44 H 1.09001 * 117.50236 * 145.02399 * 26 25 4 45 45 H 1.08997 * 117.50427 * 214.98046 * 27 25 4 46 46 H 1.09004 * 117.49912 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9786 2.1782 0.0700 6 7 3.9759 0.5378 -1.2424 7 6 5.3574 0.9141 -1.5709 8 1 5.9316 1.0269 -0.6513 9 6 5.3568 2.2382 -2.3375 10 6 5.9814 -0.1600 -2.4240 11 6 5.2351 -0.7772 -3.4115 12 6 5.8057 -1.7579 -4.1988 13 6 7.1268 -2.1322 -3.9906 14 8 7.6891 -3.0995 -4.7594 15 6 8.9356 -3.4947 -4.4315 16 1 9.4723 -2.9893 -3.6422 17 6 9.5287 -4.5501 -5.1075 18 7 8.8752 -5.1655 -6.0692 19 14 11.2556 -5.0981 -4.6526 20 1 11.7692 -4.2496 -3.5474 21 1 11.2256 -6.5169 -4.2150 22 1 12.1451 -4.9632 -5.8341 23 6 7.8718 -1.5145 -2.9945 24 6 7.2970 -0.5308 -2.2140 25 6 3.9799 0.3434 1.1988 26 6 5.0116 -0.7576 0.9450 27 6 3.5536 -1.1258 1.2273 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 3.8788 -0.4647 -1.1824 34 1 6.3819 2.5176 -2.5808 35 1 4.7825 2.1254 -3.2571 36 1 4.9055 3.0151 -1.7203 37 1 4.2064 -0.4892 -3.5697 38 1 5.2239 -2.2365 -4.9726 39 1 9.2900 -5.9040 -6.5419 40 1 8.8993 -1.8037 -2.8299 41 1 7.8760 -0.0498 -1.4395 42 1 4.0307 0.8713 2.1511 43 1 5.3734 -0.8827 -0.0756 44 1 5.7415 -0.9541 1.7303 45 1 3.3243 -1.5645 2.1984 46 1 2.9561 -1.4928 0.3928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180537128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:55 Heat of formation + Delta-G solvation = -16.894810 kcal Electronic energy + Delta-G solvation = -25335.183869 eV Core-core repulsion = 21805.757676 eV Total energy + Delta-G solvation = -3529.426194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83046 -38.82930 -37.37389 -36.55144 -34.43336 -32.28698 -31.32105 -30.15041 -28.30108 -27.90754 -26.34633 -25.36627 -23.51609 -22.62948 -22.02865 -21.87315 -19.96428 -19.43722 -17.91497 -17.30288 -16.71777 -16.26019 -15.71195 -15.55810 -14.78521 -14.66968 -14.58030 -14.42423 -13.88850 -13.62089 -13.54398 -12.90660 -12.75434 -12.66721 -12.43127 -12.36686 -12.19054 -11.87043 -11.70393 -11.64671 -11.40492 -11.31752 -11.20437 -10.99653 -10.67474 -10.60208 -10.40699 -10.28886 -10.14926 -9.89035 -9.65064 -9.30981 -8.81482 -8.30337 -8.13596 -7.14826 -6.43715 -4.02360 2.25783 2.33242 3.12854 3.14405 3.19877 3.67588 3.91987 3.97750 4.20976 4.58819 4.73948 4.92275 4.97656 5.10401 5.10947 5.11705 5.18475 5.26158 5.32566 5.35741 5.42826 5.52232 5.55589 5.61042 5.68848 5.73254 5.75484 5.83010 5.91669 5.99293 6.04771 6.06279 6.20114 6.26804 6.33764 6.43679 6.50765 6.76621 6.90449 7.04637 7.07884 7.17019 7.30927 7.46104 7.48045 7.63043 7.86410 8.01683 9.02207 9.73148 10.74470 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.003029 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.734833 B = 9242.559366 C = 9266.713570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.078 3.922 4 C 0.118 3.882 5 H 0.091 0.909 6 N -0.674 5.674 7 C 0.138 3.862 8 H 0.047 0.953 9 C -0.132 4.132 10 C -0.191 4.191 11 C -0.055 4.055 12 C -0.195 4.195 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.234 4.234 24 C -0.065 4.065 25 C -0.185 4.185 26 C -0.195 4.195 27 C -0.157 4.157 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.353 0.647 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 12.660 13.518 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C 0.001 3.999 4 C 0.007 3.993 5 H 0.109 0.891 6 N -0.308 5.308 7 C 0.029 3.971 8 H 0.065 0.935 9 C -0.190 4.190 10 C -0.192 4.192 11 C -0.074 4.074 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.254 4.254 24 C -0.084 4.084 25 C -0.205 4.205 26 C -0.232 4.232 27 C -0.194 4.194 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.175 0.825 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.868 12.642 12.732 21.512 hybrid contribution 1.250 -0.534 1.024 1.702 sum -10.618 12.108 13.756 21.180 Atomic orbital electron populations 1.22685 0.82004 1.02416 0.99434 1.87966 1.18708 1.27506 1.95250 1.22519 0.92915 0.84978 0.99521 1.21206 0.93032 0.97769 0.87285 0.89137 1.60732 1.22471 1.15407 1.32171 1.20231 0.87449 0.93664 0.95758 0.93535 1.21789 1.01149 0.95564 1.00504 1.19251 0.95102 1.02605 1.02291 1.20507 0.98701 0.94413 0.93769 1.20253 0.93496 1.03133 1.04510 1.19420 0.91946 0.88964 0.89462 1.83979 1.30543 1.46342 1.47347 1.21363 0.88830 1.16065 1.20454 0.89069 1.25285 1.00013 0.95432 0.95816 1.70054 1.37388 1.21332 1.20998 0.85660 0.80381 0.78845 0.78612 1.19130 1.20145 1.20163 1.21112 1.01381 1.01999 1.00878 1.20578 0.94031 0.95929 0.97823 1.22917 1.05270 0.92058 1.00248 1.23305 0.92901 1.03115 1.03862 1.22889 0.96797 0.96564 1.03182 0.89974 0.94702 0.94338 0.92687 0.93756 0.82502 0.92749 0.92057 0.93675 0.86329 0.86641 0.92101 0.85692 0.87831 0.88510 0.87415 0.89333 0.89728 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.02 7.67 -35.23 -0.27 -4.29 16 3 C 0.08 0.75 5.77 37.16 0.21 0.96 16 4 C 0.12 1.23 2.72 -67.71 -0.18 1.05 16 5 H 0.09 0.88 7.11 -51.93 -0.37 0.51 16 6 N -0.67 -8.36 5.18 -100.95 -0.52 -8.89 16 7 C 0.14 1.84 1.54 -68.86 -0.11 1.73 16 8 H 0.05 0.62 6.59 -51.93 -0.34 0.27 16 9 C -0.13 -1.64 9.38 37.16 0.35 -1.29 16 10 C -0.19 -3.17 3.85 -104.57 -0.40 -3.58 16 11 C -0.06 -0.99 8.99 -39.61 -0.36 -1.35 16 12 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 13 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 14 O -0.18 -5.13 9.76 0.06 0.00 -5.13 16 15 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 19 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.23 -5.08 9.17 -39.39 -0.36 -5.44 16 24 C -0.06 -1.17 9.66 -39.61 -0.38 -1.55 16 25 C -0.19 -1.97 5.69 -90.62 -0.52 -2.48 16 26 C -0.19 -2.37 8.82 -26.73 -0.24 -2.60 16 27 C -0.16 -1.81 8.67 -26.73 -0.23 -2.04 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.35 4.91 5.30 -39.29 -0.21 4.70 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.48 7.43 -51.93 -0.39 0.09 16 37 H 0.12 1.92 7.70 -52.49 -0.40 1.52 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 41 H 0.10 1.62 8.03 -52.49 -0.42 1.20 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.11 1.52 4.46 -51.93 -0.23 1.29 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.11 1.38 5.93 -51.93 -0.31 1.07 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -29.73 365.22 -8.14 -37.87 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.03 Total: 9.97 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -1.56 Total: -25.96 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.24 Total: -33.58 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.27 Total: -9.42 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.73 -8.14 -37.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180537128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.972 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds