Wall clock time and date at job start Tue Mar 31 2020 09:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99841 * 2 1 4 4 C 1.53003 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47400 * 183.86771 * 4 3 2 6 6 N 1.46894 * 109.46840 * 63.86580 * 4 3 2 7 7 C 1.46904 * 110.99790 * 155.00084 * 6 4 3 8 8 H 1.09001 * 109.46993 * 35.00486 * 7 6 4 9 9 C 1.53002 * 109.47174 * 275.00121 * 7 6 4 10 10 C 1.50698 * 109.47272 * 154.99751 * 7 6 4 11 11 C 1.38310 * 119.92579 * 39.73061 * 10 7 6 12 12 C 1.38100 * 120.06670 * 179.72358 * 11 10 7 13 13 C 1.38883 * 119.92885 * 0.54951 * 12 11 10 14 14 O 1.35756 * 120.07062 * 179.74860 * 13 12 11 15 15 C 1.34819 * 117.00115 * 185.50323 * 14 13 12 16 16 H 1.07998 * 120.00374 * 354.93909 * 15 14 13 17 17 C 1.38654 * 119.99986 * 174.93598 * 15 14 13 18 18 N 1.31562 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47129 * 120.00024 * 19 17 15 22 22 H 1.48503 * 109.46894 * 239.99827 * 19 17 15 23 23 C 1.38875 * 119.86488 * 359.72205 * 13 12 11 24 24 C 1.38105 * 119.92924 * 0.02562 * 23 13 12 25 25 C 1.53004 * 109.47031 * 303.86761 * 4 3 2 26 26 C 1.52997 * 117.49810 * 133.43763 * 25 4 3 27 27 C 1.53001 * 117.49882 * 64.81320 * 25 4 3 28 28 H 1.09003 * 109.46719 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47121 * 299.99865 * 1 2 3 30 30 H 1.09004 * 109.47009 * 59.99999 * 1 2 3 31 31 H 1.08995 * 109.47490 * 300.00145 * 3 2 1 32 32 H 1.09004 * 109.46890 * 59.99717 * 3 2 1 33 33 H 1.00902 * 111.00324 * 278.95510 * 6 4 3 34 34 H 1.09003 * 109.46752 * 179.97438 * 9 7 6 35 35 H 1.09003 * 109.46957 * 299.99944 * 9 7 6 36 36 H 1.08999 * 109.46720 * 60.00186 * 9 7 6 37 37 H 1.07992 * 119.96894 * 359.97438 * 11 10 7 38 38 H 1.08002 * 120.03801 * 180.27109 * 12 11 10 39 39 H 0.97003 * 119.99442 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.03629 * 179.97438 * 23 13 12 41 41 H 1.07999 * 119.96428 * 180.02562 * 24 23 13 42 42 H 1.09003 * 115.55183 * 279.14684 * 25 4 3 43 43 H 1.08998 * 117.50026 * 359.97438 * 26 25 4 44 44 H 1.09001 * 117.50236 * 145.02399 * 26 25 4 45 45 H 1.08997 * 117.50427 * 214.98046 * 27 25 4 46 46 H 1.09004 * 117.49912 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9786 2.1782 0.0700 6 7 3.9759 0.5378 -1.2424 7 6 5.3574 0.9141 -1.5709 8 1 5.9316 1.0269 -0.6513 9 6 5.3568 2.2382 -2.3375 10 6 5.9814 -0.1600 -2.4240 11 6 5.2351 -0.7772 -3.4115 12 6 5.8057 -1.7579 -4.1988 13 6 7.1268 -2.1322 -3.9906 14 8 7.6891 -3.0995 -4.7594 15 6 8.9356 -3.4947 -4.4315 16 1 9.4723 -2.9893 -3.6422 17 6 9.5287 -4.5501 -5.1075 18 7 8.8752 -5.1655 -6.0692 19 14 11.2556 -5.0981 -4.6526 20 1 11.7692 -4.2496 -3.5474 21 1 11.2256 -6.5169 -4.2150 22 1 12.1451 -4.9632 -5.8341 23 6 7.8718 -1.5145 -2.9945 24 6 7.2970 -0.5308 -2.2140 25 6 3.9799 0.3434 1.1988 26 6 5.0116 -0.7576 0.9450 27 6 3.5536 -1.1258 1.2273 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 3.8788 -0.4647 -1.1824 34 1 6.3819 2.5176 -2.5808 35 1 4.7825 2.1254 -3.2571 36 1 4.9055 3.0151 -1.7203 37 1 4.2064 -0.4892 -3.5697 38 1 5.2239 -2.2365 -4.9726 39 1 9.2900 -5.9040 -6.5419 40 1 8.8993 -1.8037 -2.8299 41 1 7.8760 -0.0498 -1.4395 42 1 4.0307 0.8713 2.1511 43 1 5.3734 -0.8827 -0.0756 44 1 5.7415 -0.9541 1.7303 45 1 3.3243 -1.5645 2.1984 46 1 2.9561 -1.4928 0.3928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180537128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:54 Heat of formation + Delta-G solvation = -34.552874 kcal Electronic energy + Delta-G solvation = -25335.949581 eV Core-core repulsion = 21805.757676 eV Total energy + Delta-G solvation = -3530.191905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08004 -40.24951 -38.59635 -37.71928 -35.64311 -34.23757 -32.40759 -31.76972 -29.53009 -29.05378 -27.36684 -27.02369 -24.34989 -23.96439 -23.45120 -23.07189 -21.36544 -20.36590 -19.72191 -18.87944 -17.93001 -17.15061 -16.66589 -16.53457 -16.29584 -16.11953 -15.69415 -15.51525 -15.41084 -15.26022 -15.04854 -14.40566 -14.07275 -13.92495 -13.57366 -13.50726 -13.23652 -13.13918 -13.07631 -12.85108 -12.56450 -12.42080 -12.29019 -12.24329 -12.14794 -12.09669 -11.82602 -11.55375 -11.16879 -11.03651 -10.79064 -10.74808 -10.36253 -9.76178 -9.28329 -8.89427 -8.46908 -6.14878 0.61333 0.70013 1.34629 1.43021 1.52994 2.17581 2.82157 2.89788 3.14080 3.14889 3.27853 3.53385 3.86639 3.92816 4.04021 4.12423 4.16122 4.23427 4.35922 4.43269 4.50117 4.54635 4.61822 4.64149 4.67251 4.77080 4.77997 4.82398 4.87122 4.89910 4.96767 5.01508 5.08513 5.14524 5.16550 5.18691 5.27004 5.31674 5.43082 5.49143 5.59419 5.72469 5.75850 6.03717 6.21747 6.27601 6.47444 6.50957 6.98014 7.79763 8.76725 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.003029 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.734833 B = 9242.559366 C = 9266.713570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.078 3.922 4 C 0.116 3.884 5 H 0.107 0.893 6 N -0.676 5.676 7 C 0.143 3.857 8 H 0.058 0.942 9 C -0.130 4.130 10 C -0.160 4.160 11 C -0.047 4.047 12 C -0.206 4.206 13 C 0.115 3.885 14 O -0.234 6.234 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.241 4.241 24 C -0.062 4.062 25 C -0.168 4.168 26 C -0.206 4.206 27 C -0.160 4.160 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.344 0.656 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.272 0.728 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 15.377 16.356 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.001 3.999 4 C 0.006 3.994 5 H 0.125 0.875 6 N -0.308 5.308 7 C 0.034 3.966 8 H 0.076 0.924 9 C -0.188 4.188 10 C -0.161 4.161 11 C -0.066 4.066 12 C -0.225 4.225 13 C 0.065 3.935 14 O -0.141 6.141 15 C -0.488 4.488 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.260 4.260 24 C -0.081 4.081 25 C -0.188 4.188 26 C -0.244 4.244 27 C -0.197 4.197 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.132 0.868 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.368 15.417 15.605 25.183 hybrid contribution 1.117 -1.133 0.310 1.620 sum -11.251 14.285 15.915 24.164 Atomic orbital electron populations 1.22788 0.80878 1.02926 1.00231 1.87940 1.20030 1.28256 1.95426 1.22543 0.92103 0.84792 1.00446 1.21363 0.93877 0.98124 0.86054 0.87480 1.60763 1.21420 1.14899 1.33752 1.20245 0.88068 0.92695 0.95549 0.92386 1.21768 1.01335 0.95329 1.00353 1.19732 0.94297 1.01428 1.00641 1.20744 0.99682 0.93067 0.93059 1.20465 0.92757 1.04101 1.05175 1.19918 0.93344 0.89395 0.90838 1.83942 1.31305 1.48931 1.49885 1.21848 0.89253 1.16710 1.21000 0.88152 1.26590 1.04833 0.95161 0.95523 1.70199 1.39942 1.22711 1.23127 0.84533 0.74266 0.78563 0.78859 1.17459 1.19361 1.19308 1.21203 1.01078 1.02827 1.00885 1.20913 0.94839 0.94697 0.97607 1.22975 1.03269 0.91520 1.01007 1.23230 0.93387 1.04956 1.02795 1.22840 0.96057 0.97738 1.03019 0.89737 0.93358 0.94028 0.92700 0.91863 0.83528 0.92731 0.92963 0.91172 0.84080 0.87291 0.91875 0.86491 0.84495 0.86823 0.89447 0.88930 0.89005 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.54 7.67 -148.98 -1.14 -8.68 16 3 C 0.08 1.23 5.77 71.98 0.42 1.64 16 4 C 0.12 1.98 2.72 44.92 0.12 2.10 16 5 H 0.11 1.52 7.11 -2.39 -0.02 1.51 16 6 N -0.68 -14.66 5.18 -473.30 -2.45 -17.11 16 7 C 0.14 3.31 1.54 44.17 0.07 3.38 16 8 H 0.06 1.28 6.59 -2.39 -0.02 1.26 16 9 C -0.13 -2.70 9.38 71.98 0.68 -2.03 16 10 C -0.16 -4.96 3.85 -19.83 -0.08 -5.04 16 11 C -0.05 -1.65 8.99 22.25 0.20 -1.45 16 12 C -0.21 -9.04 9.99 22.39 0.22 -8.82 16 13 C 0.12 5.85 6.65 22.58 0.15 6.00 16 14 O -0.23 -14.36 9.76 -22.69 -0.22 -14.58 16 15 C -0.41 -24.36 9.49 67.92 0.64 -23.72 16 16 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 18 N -0.92 -57.36 13.67 21.61 0.30 -57.07 16 19 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 20 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 C -0.24 -10.58 9.17 22.39 0.21 -10.38 16 24 C -0.06 -2.14 9.66 22.25 0.21 -1.92 16 25 C -0.17 -2.99 5.69 -10.79 -0.06 -3.05 16 26 C -0.21 -4.53 8.82 30.59 0.27 -4.26 16 27 C -0.16 -3.33 8.67 30.60 0.27 -3.06 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.34 8.79 5.30 -89.69 -0.48 8.32 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.15 7.43 -2.39 -0.02 1.13 16 37 H 0.14 4.31 7.70 -2.91 -0.02 4.29 16 38 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 41 H 0.14 3.83 8.03 -2.91 -0.02 3.81 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 2.28 4.46 -2.39 -0.01 2.26 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 2.28 5.93 -2.38 -0.01 2.27 16 Total: -1.00 -69.21 365.22 4.04 -65.16 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.50 Total: 36.68 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 5.03 Total: -49.86 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.16 Total: -74.18 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -1.36 Total: -23.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.21 4.04 -65.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180537128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.610 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds