Wall clock time and date at job start Tue Mar 31 2020 09:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47452 * 2 1 4 4 N 1.46902 * 109.47274 * 240.00264 * 2 1 3 5 5 C 1.46903 * 111.00224 * 85.00364 * 4 2 1 6 6 C 1.52995 * 109.47038 * 180.02562 * 5 4 2 7 7 C 1.53000 * 112.85521 * 50.32853 * 6 5 4 8 8 O 1.42901 * 109.46782 * 309.66827 * 7 6 5 9 9 C 1.53789 * 113.61087 * 279.13361 * 6 5 4 10 10 C 1.53961 * 87.01950 * 220.05191 * 9 6 5 11 11 C 1.53778 * 113.61234 * 181.52945 * 6 5 4 12 12 C 1.50703 * 109.47039 * 120.00134 * 2 1 3 13 13 C 1.38301 * 119.92934 * 79.72701 * 12 2 1 14 14 C 1.38095 * 120.06847 * 179.72428 * 13 12 2 15 15 C 1.38884 * 119.92906 * 0.55210 * 14 13 12 16 16 O 1.35752 * 120.06531 * 179.74753 * 15 14 13 17 17 C 1.34831 * 116.99805 * 174.43849 * 16 15 14 18 18 H 1.08007 * 119.99756 * 5.05779 * 17 16 15 19 19 C 1.38652 * 120.00247 * 185.05106 * 17 16 15 20 20 N 1.31551 * 120.00149 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47020 * 90.00458 * 21 19 17 23 23 H 1.48506 * 109.46897 * 210.00340 * 21 19 17 24 24 H 1.48503 * 109.47163 * 330.00185 * 21 19 17 25 25 C 1.38877 * 119.86244 * 359.71610 * 15 14 13 26 26 C 1.38098 * 119.92784 * 0.02562 * 25 15 14 27 27 H 1.09009 * 109.46881 * 60.00014 * 1 2 3 28 28 H 1.09002 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47347 * 300.00061 * 1 2 3 30 30 H 1.00901 * 110.99676 * 208.95469 * 4 2 1 31 31 H 1.09004 * 109.46532 * 300.00162 * 5 4 2 32 32 H 1.08997 * 109.47309 * 59.99640 * 5 4 2 33 33 H 1.08999 * 109.46769 * 69.66918 * 7 6 5 34 34 H 1.08998 * 109.47182 * 189.66818 * 7 6 5 35 35 H 0.96700 * 113.99872 * 179.97438 * 8 7 6 36 36 H 1.09000 * 113.61362 * 334.56439 * 9 6 5 37 37 H 1.08998 * 113.61721 * 105.47527 * 9 6 5 38 38 H 1.09004 * 113.53487 * 270.81622 * 10 9 6 39 39 H 1.08991 * 113.74518 * 139.94117 * 10 9 6 40 40 H 1.09002 * 113.61290 * 254.52754 * 11 6 5 41 41 H 1.09001 * 113.61667 * 25.34146 * 11 6 5 42 42 H 1.08004 * 119.96533 * 0.02562 * 13 12 2 43 43 H 1.08005 * 120.03699 * 180.26695 * 14 13 12 44 44 H 0.96993 * 120.00886 * 179.97438 * 20 19 17 45 45 H 1.07994 * 120.03537 * 179.97438 * 25 15 14 46 46 H 1.08006 * 119.96059 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0826 0.2227 -2.3469 6 6 2.5951 -0.5331 -3.5744 7 6 1.8406 -1.8401 -3.8255 8 8 1.7944 -2.6029 -2.6179 9 6 4.1248 -0.6887 -3.6076 10 6 4.0400 -0.4091 -5.1192 11 6 2.7340 0.3484 -4.8268 12 6 2.0323 -0.7105 1.2305 13 6 2.0607 -2.0927 1.2659 14 6 2.5258 -2.7466 2.3898 15 6 2.9545 -2.0148 3.4896 16 8 3.4073 -2.6549 4.5978 17 6 3.9151 -1.8875 5.5833 18 1 3.8735 -0.8111 5.5053 19 6 4.4906 -2.4802 6.6968 20 7 4.5416 -3.7913 6.7917 21 14 5.1947 -1.4169 8.0618 22 1 4.1374 -1.1361 9.0659 23 1 6.3206 -2.1317 8.7152 24 1 5.6861 -0.1378 7.4894 25 6 2.9194 -0.6270 3.4530 26 6 2.4582 0.0211 2.3241 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9173 -1.1204 -1.0287 31 1 1.0871 0.6164 -2.5525 32 1 2.7589 1.0463 -2.1182 33 1 0.8253 -1.6164 -4.1530 34 1 2.3535 -2.4132 -4.5978 35 1 1.3294 -3.4464 -2.7031 36 1 4.6544 0.0836 -3.0499 37 1 4.4666 -1.6954 -3.3673 38 1 3.8985 -1.3071 -5.7207 39 1 4.8406 0.2290 -5.4931 40 1 1.9546 0.1777 -5.5695 41 1 2.8812 1.4050 -4.6031 42 1 1.7235 -2.6613 0.4118 43 1 2.5518 -3.8261 2.4152 44 1 4.9445 -4.2060 7.5704 45 1 3.2517 -0.0552 4.3068 46 1 2.4311 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184539341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:32 Heat of formation + Delta-G solvation = -46.420932 kcal Electronic energy + Delta-G solvation = -25048.123804 eV Core-core repulsion = 21517.417261 eV Total energy + Delta-G solvation = -3530.706542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94325 -40.57726 -38.83294 -36.58744 -36.41801 -34.26426 -32.19408 -31.71881 -29.37811 -28.67304 -27.35139 -26.51656 -26.19784 -23.83835 -23.57339 -22.46798 -21.24424 -19.72922 -19.22599 -18.78378 -17.95579 -17.07787 -16.60778 -16.31343 -16.14965 -16.05328 -15.54013 -15.53394 -15.34182 -14.80570 -14.56693 -14.38917 -14.07703 -13.98626 -13.66204 -13.59212 -13.49927 -13.16660 -12.98316 -12.85152 -12.59151 -12.45935 -12.32794 -12.24315 -12.12424 -12.02633 -11.57024 -11.22177 -11.16664 -11.03853 -11.00230 -10.77337 -10.41084 -9.73861 -8.96671 -8.87432 -8.46517 -6.14645 0.63472 0.72700 1.34297 1.43871 1.51992 2.17959 2.83392 3.14657 3.22952 3.50199 3.55280 3.66510 3.94262 3.95892 3.98373 4.14678 4.25768 4.28155 4.38904 4.45996 4.56559 4.66017 4.68005 4.74291 4.78775 4.81271 4.83543 4.89553 4.94832 5.00793 5.02909 5.07381 5.13030 5.16609 5.18300 5.24269 5.33626 5.43250 5.49857 5.56664 5.62750 5.73324 5.81098 6.04194 6.25952 6.43919 6.69951 6.98215 7.25973 7.80235 8.76991 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.002756 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.320566 B =10157.246765 C =10264.608314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.142 3.858 3 H 0.041 0.959 4 N -0.647 5.647 5 C 0.080 3.920 6 C -0.082 4.082 7 C 0.112 3.888 8 O -0.552 6.552 9 C -0.138 4.138 10 C -0.136 4.136 11 C -0.120 4.120 12 C -0.161 4.161 13 C -0.039 4.039 14 C -0.206 4.206 15 C 0.114 3.886 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.254 1.254 25 C -0.244 4.244 26 C -0.068 4.068 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.338 0.662 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.376 0.624 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.148 0.852 43 H 0.110 0.890 44 H 0.273 0.727 45 H 0.117 0.883 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 9.497 -24.124 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.032 3.968 3 H 0.059 0.941 4 N -0.279 5.279 5 C -0.049 4.049 6 C -0.082 4.082 7 C 0.034 3.966 8 O -0.357 6.357 9 C -0.176 4.176 10 C -0.174 4.174 11 C -0.158 4.158 12 C -0.162 4.162 13 C -0.057 4.057 14 C -0.226 4.226 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.263 4.263 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.223 0.777 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.166 0.834 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.623 9.376 -23.883 26.267 hybrid contribution 0.939 0.086 1.128 1.470 sum -4.683 9.462 -22.756 25.086 Atomic orbital electron populations 1.21675 0.93687 1.01883 1.00841 1.20203 0.95820 0.94102 0.86632 0.94070 1.60521 1.33587 1.31176 1.02571 1.21893 0.99833 0.92871 0.90325 1.21958 0.95247 0.95699 0.95322 1.21635 0.97722 0.90521 0.86731 1.86785 1.80278 1.35387 1.33233 1.23017 0.95709 1.01364 0.97465 1.22855 0.98128 1.00739 0.95637 1.22896 0.98098 0.98836 0.95930 1.19779 1.06147 0.93593 0.96703 1.20786 0.95109 0.94123 0.95682 1.20497 1.09184 0.99453 0.93423 1.19938 0.93613 0.92396 0.87687 1.83943 1.70091 1.36481 1.23534 1.21810 1.38380 0.91344 0.97434 0.88268 1.26586 0.96918 0.97825 1.00741 1.70180 1.44154 1.10981 1.30698 0.84595 0.78034 0.77395 0.76218 1.18750 1.19513 1.17742 1.21187 1.10444 0.93539 1.01121 1.20934 0.96051 0.99782 0.91855 0.91977 0.92818 0.93176 0.84362 0.91212 0.96187 0.93765 0.93937 0.77672 0.91039 0.92384 0.89653 0.90939 0.90221 0.89396 0.83432 0.87169 0.91847 0.86551 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.39 71.98 0.68 -2.18 16 2 C 0.14 3.60 2.81 44.17 0.12 3.72 16 3 H 0.04 1.01 7.66 -2.39 -0.02 1.00 16 4 N -0.65 -14.93 3.27 -495.45 -1.62 -16.55 16 5 C 0.08 1.52 4.93 86.30 0.43 1.95 16 6 C -0.08 -1.30 0.98 -51.66 -0.05 -1.35 16 7 C 0.11 1.71 6.37 71.98 0.46 2.17 16 8 O -0.55 -10.31 10.90 -148.98 -1.62 -11.93 16 9 C -0.14 -2.35 7.16 31.18 0.22 -2.12 16 10 C -0.14 -1.71 7.74 31.18 0.24 -1.47 16 11 C -0.12 -1.44 7.23 31.12 0.23 -1.21 16 12 C -0.16 -5.27 4.71 -19.83 -0.09 -5.37 16 13 C -0.04 -1.38 9.00 22.25 0.20 -1.18 16 14 C -0.21 -9.18 9.99 22.39 0.22 -8.96 16 15 C 0.11 5.87 6.65 22.58 0.15 6.02 16 16 O -0.23 -14.48 9.76 -22.78 -0.22 -14.70 16 17 C -0.41 -24.70 9.49 67.92 0.64 -24.05 16 18 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 19 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 20 N -0.92 -57.66 13.67 21.61 0.30 -57.36 16 21 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 C -0.24 -11.01 9.17 22.39 0.21 -10.81 16 26 C -0.07 -2.45 9.66 22.25 0.21 -2.23 16 27 H 0.06 1.23 7.45 -2.38 -0.02 1.21 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.34 9.00 7.68 -89.69 -0.69 8.31 16 31 H 0.07 1.27 7.44 -2.38 -0.02 1.25 16 32 H 0.02 0.39 7.89 -2.39 -0.02 0.38 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 0.57 7.34 -2.39 -0.02 0.56 16 35 H 0.38 4.64 9.12 -74.06 -0.68 3.97 16 36 H 0.07 1.30 7.99 -2.39 -0.02 1.28 16 37 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.08 0.97 7.64 -2.38 -0.02 0.95 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 41 H 0.09 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.15 4.60 7.72 -2.91 -0.02 4.58 16 43 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 46 H 0.13 3.99 8.03 -2.91 -0.02 3.97 16 Total: -1.00 -70.78 369.29 2.81 -67.97 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.38 Total: 34.83 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 4.33 Total: -47.98 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.32 Total: -73.91 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.85 Total: -26.64 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.78 2.81 -67.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184539341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.545 kcal (2) G-P(sol) polarization free energy of solvation -70.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds