Wall clock time and date at job start Tue Mar 31 2020 09:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.52243 * 2 1 4 4 C 1.53097 * 109.57653 * 239.84266 * 2 1 3 5 5 O 1.42902 * 109.41493 * 182.45652 * 4 2 1 6 6 C 1.43035 * 114.13534 * 61.15611 * 5 4 2 7 7 C 1.53091 * 109.34424 * 298.88074 * 6 5 4 8 8 C 1.53174 * 109.52508 * 120.12418 * 2 1 3 9 9 H 1.09007 * 109.61482 * 296.86007 * 8 2 1 10 10 N 1.46503 * 109.54483 * 57.08169 * 8 2 1 11 11 C 1.39672 * 120.00139 * 204.56235 * 10 8 2 12 12 C 1.38973 * 120.04357 * 359.71817 * 11 10 8 13 13 C 1.38117 * 120.02925 * 179.77282 * 12 11 10 14 14 C 1.38218 * 120.12900 * 0.50430 * 13 12 11 15 15 C 1.38775 * 120.09337 * 359.75286 * 14 13 12 16 16 O 1.35893 * 120.01741 * 179.97438 * 15 14 13 17 17 C 1.42898 * 117.00036 * 0.02562 * 16 15 14 18 18 C 1.52999 * 109.47159 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47152 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99970 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00000 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47008 * 60.00201 * 23 21 19 25 25 H 1.48498 * 109.47331 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47357 * 300.00213 * 23 21 19 27 27 C 1.38620 * 119.96063 * 359.97438 * 15 14 13 28 28 H 1.08995 * 109.47040 * 299.87653 * 1 2 3 29 29 H 1.08997 * 109.47109 * 59.87720 * 1 2 3 30 30 H 1.09003 * 109.46720 * 179.87538 * 1 2 3 31 31 H 1.08997 * 109.47580 * 302.43534 * 4 2 1 32 32 H 1.08996 * 109.48015 * 62.45571 * 4 2 1 33 33 H 1.09007 * 109.56642 * 178.88802 * 6 5 4 34 34 H 1.09000 * 109.46222 * 58.81049 * 6 5 4 35 35 H 1.09002 * 109.52401 * 297.63932 * 7 6 5 36 36 H 1.09004 * 109.52068 * 177.51577 * 7 6 5 37 37 H 0.96998 * 119.99591 * 24.55785 * 10 8 2 38 38 H 1.07995 * 119.98445 * 0.02867 * 12 11 10 39 39 H 1.08003 * 119.93661 * 180.23754 * 13 12 11 40 40 H 1.07998 * 119.94983 * 179.76237 * 14 13 12 41 41 H 1.08998 * 109.47368 * 300.00209 * 17 16 15 42 42 H 1.09005 * 109.46904 * 60.00610 * 17 16 15 43 43 H 1.08998 * 109.46855 * 300.00161 * 18 17 16 44 44 H 1.08995 * 109.47165 * 60.00279 * 18 17 16 45 45 H 0.96997 * 119.99656 * 180.02562 * 22 21 19 46 46 H 1.07995 * 120.05503 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0429 -0.7247 -1.2472 5 8 3.4708 -0.7728 -1.2151 6 6 4.0070 -1.4799 -0.0933 7 6 3.5717 -0.7850 1.1994 8 6 2.0419 -0.7245 1.2487 9 1 1.7269 -0.1831 2.1408 10 7 1.4986 -2.0846 1.2835 11 6 1.3768 -2.7571 2.5016 12 6 1.7761 -2.1390 3.6805 13 6 1.6512 -2.8025 4.8854 14 6 1.1388 -4.0857 4.9210 15 6 0.7433 -4.7099 3.7463 16 8 0.2402 -5.9717 3.7830 17 6 0.1463 -6.5956 5.0652 18 6 -0.4377 -8.0009 4.9070 19 6 -0.5374 -8.6586 6.2592 20 1 -0.2160 -8.1276 7.1431 21 6 -1.0390 -9.9383 6.3681 22 7 -1.4299 -10.5852 5.2918 23 14 -1.1619 -10.7539 8.0441 24 1 -2.0447 -9.9465 8.9239 25 1 -1.7288 -12.1178 7.8906 26 1 0.1906 -10.8459 8.6503 27 6 0.8618 -4.0454 2.5356 28 1 -0.3633 0.5119 0.8910 29 1 -0.3633 0.5157 -0.8889 30 1 -0.3633 -1.0277 -0.0022 31 1 1.6454 -1.7394 -1.2673 32 1 1.7170 -0.1889 -2.1387 33 1 5.0954 -1.4877 -0.1531 34 1 3.6351 -2.5045 -0.0983 35 1 3.9772 0.2265 1.2237 36 1 3.9419 -1.3464 2.0573 37 1 1.2234 -2.5181 0.4605 38 1 2.1805 -1.1380 3.6549 39 1 1.9585 -2.3193 5.8012 40 1 1.0459 -4.6032 5.8644 41 1 1.1390 -6.6630 5.5101 42 1 -0.5019 -6.0030 5.7109 43 1 -1.4304 -7.9338 4.4619 44 1 0.2107 -8.5932 4.2614 45 1 -1.7831 -11.4853 5.3685 46 1 0.5541 -4.5295 1.6205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195056002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:42 Heat of formation + Delta-G solvation = -91.576502 kcal Electronic energy + Delta-G solvation = -24640.869464 eV Core-core repulsion = 21108.204829 eV Total energy + Delta-G solvation = -3532.664635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37720 -40.61881 -38.72613 -36.52188 -35.44904 -34.08351 -32.77650 -32.47212 -30.65763 -29.29168 -27.66366 -26.97900 -25.88892 -23.98260 -23.29711 -23.16725 -22.02767 -20.37702 -19.26937 -18.40315 -17.60242 -17.16377 -17.10615 -16.91311 -16.62495 -16.56952 -16.46100 -15.89405 -15.64068 -15.18193 -14.47871 -14.37360 -14.33133 -14.31027 -13.97545 -13.70958 -13.27198 -13.25804 -13.19483 -12.89515 -12.77418 -12.64343 -12.54895 -12.28029 -12.04376 -11.96576 -11.85920 -11.56521 -11.56241 -11.39283 -11.28980 -10.85740 -10.61590 -10.38832 -9.22153 -8.34736 -8.26753 -6.40636 0.57584 0.69997 1.40705 1.44987 1.52934 2.15259 2.39324 2.72684 2.92564 2.96479 3.07493 3.59973 3.80430 3.83563 3.98175 4.02143 4.21226 4.25236 4.28525 4.29750 4.35002 4.39710 4.45358 4.55946 4.62069 4.67668 4.74518 4.75620 4.77498 4.85251 4.95023 4.99057 5.08406 5.12793 5.16093 5.29826 5.33350 5.37277 5.46743 5.53109 5.64637 5.67425 5.76776 6.06991 6.21683 6.41169 6.61348 6.73903 6.75423 7.29455 8.86348 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.002321 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.418358 B =12060.721748 C =12286.201378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 H 0.102 0.898 4 C 0.060 3.940 5 O -0.399 6.399 6 C 0.060 3.940 7 C -0.167 4.167 8 C 0.153 3.847 9 H 0.092 0.908 10 N -0.731 5.731 11 C 0.259 3.741 12 C -0.234 4.234 13 C -0.032 4.032 14 C -0.282 4.282 15 C 0.152 3.848 16 O -0.343 6.343 17 C 0.087 3.913 18 C 0.029 3.971 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.001 3.999 22 N -0.932 5.932 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.253 4.253 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.399 0.601 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.059 0.941 42 H 0.059 0.941 43 H -0.003 1.003 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 26.306 -9.586 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 H 0.120 0.880 4 C -0.017 4.017 5 O -0.318 6.318 6 C -0.017 4.017 7 C -0.206 4.206 8 C 0.049 3.951 9 H 0.110 0.890 10 N -0.361 5.361 11 C 0.154 3.846 12 C -0.257 4.257 13 C -0.050 4.050 14 C -0.303 4.303 15 C 0.106 3.894 16 O -0.257 6.257 17 C 0.013 3.987 18 C -0.009 4.009 19 C -0.585 4.585 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.571 5.571 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.277 4.277 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.138 0.862 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.051 26.299 -9.939 29.535 hybrid contribution -0.567 -1.427 0.621 1.656 sum 8.484 24.872 -9.318 27.882 Atomic orbital electron populations 1.21706 0.93455 1.02106 1.02761 1.21986 0.97132 1.00994 0.94203 0.87971 1.22766 0.80432 0.99813 0.98692 1.87940 1.21066 1.76551 1.46199 1.22600 0.99430 0.94379 0.85280 1.22642 0.96382 1.02903 0.98687 1.21091 0.92430 0.82246 0.99379 0.89007 1.44785 1.70244 1.15806 1.05241 1.17358 0.90802 0.89120 0.87278 1.20756 1.11916 1.02318 0.90684 1.20962 0.93232 0.92171 0.98659 1.21215 1.12721 0.99338 0.96996 1.19156 0.91731 0.83629 0.94910 1.86052 1.78420 1.26854 1.34420 1.22829 1.00137 0.93934 0.81814 1.18962 0.94944 0.89865 0.97081 1.21374 1.43359 1.00470 0.93257 0.91111 1.26060 0.94351 0.97833 1.01488 1.70118 1.42906 1.13138 1.30948 0.85328 0.79123 0.77251 0.78316 1.18772 1.20734 1.18797 1.19756 1.15537 0.96247 0.96141 0.92129 0.91147 0.93166 0.93532 0.87411 0.88209 0.93945 0.89059 0.90503 0.76524 0.83650 0.83366 0.86196 0.92304 0.92283 0.98416 0.98428 0.92419 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.01 71.98 0.65 -0.84 16 2 C -0.12 -1.30 2.70 -10.70 -0.03 -1.33 16 3 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.06 0.74 5.96 72.01 0.43 1.17 16 5 O -0.40 -6.66 10.77 -148.98 -1.60 -8.26 16 6 C 0.06 0.89 6.69 72.01 0.48 1.37 16 7 C -0.17 -2.09 5.73 30.68 0.18 -1.92 16 8 C 0.15 1.95 1.98 45.11 0.09 2.04 16 9 H 0.09 1.11 6.51 -2.38 -0.02 1.09 16 10 N -0.73 -12.61 3.86 -318.44 -1.23 -13.83 16 11 C 0.26 6.17 6.63 38.20 0.25 6.42 16 12 C -0.23 -5.08 8.84 22.42 0.20 -4.88 16 13 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 14 C -0.28 -9.01 9.04 22.39 0.20 -8.81 16 15 C 0.15 5.59 6.68 22.49 0.15 5.74 16 16 O -0.34 -15.27 10.13 -92.34 -0.94 -16.21 16 17 C 0.09 3.97 4.68 71.98 0.34 4.31 16 18 C 0.03 1.61 5.34 29.85 0.16 1.77 16 19 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 20 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 21 C 0.00 0.07 5.46 84.66 0.46 0.53 16 22 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 23 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 27 C -0.25 -7.89 9.83 22.49 0.22 -7.67 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.64 7.26 -2.39 -0.02 0.63 16 31 H 0.05 0.60 6.72 -2.39 -0.02 0.58 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 0.72 7.75 -2.39 -0.02 0.70 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.07 7.75 -2.38 -0.02 1.05 16 37 H 0.40 6.67 6.68 -92.71 -0.62 6.05 16 38 H 0.15 2.29 6.16 -2.91 -0.02 2.27 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.12 3.87 6.29 -2.91 -0.02 3.85 16 41 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 42 H 0.06 2.54 7.66 -2.38 -0.02 2.53 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -68.42 364.35 3.13 -65.29 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.35 Total: 18.07 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.24 Total: -33.81 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -0.94 Total: -70.98 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -2.54 Total: -24.47 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.42 3.13 -65.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195056002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.286 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds