Wall clock time and date at job start Tue Mar 31 2020 09:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47419 * 2 1 4 4 N 1.46900 * 109.47370 * 239.99782 * 2 1 3 5 5 C 1.46904 * 111.00000 * 85.00251 * 4 2 1 6 6 H 1.09008 * 109.46861 * 324.99989 * 5 4 2 7 7 C 1.52993 * 109.47444 * 84.99946 * 5 4 2 8 8 C 1.52998 * 109.46986 * 205.00151 * 5 4 2 9 9 H 1.08995 * 110.46041 * 302.33394 * 8 5 4 10 10 C 1.54512 * 110.51149 * 64.93778 * 8 5 4 11 11 C 1.54484 * 104.06121 * 118.64442 * 10 8 5 12 12 O 1.44424 * 104.80569 * 23.97899 * 11 10 8 13 13 C 1.44434 * 105.27435 * 319.48849 * 12 11 10 14 14 C 1.50700 * 109.47103 * 119.99686 * 2 1 3 15 15 C 1.38305 * 119.92931 * 79.72977 * 14 2 1 16 16 C 1.38097 * 120.06905 * 179.72453 * 15 14 2 17 17 C 1.38877 * 119.93034 * 0.54710 * 16 15 14 18 18 O 1.35755 * 120.06989 * 179.74552 * 17 16 15 19 19 C 1.34835 * 116.99895 * 185.50003 * 18 17 16 20 20 H 1.08000 * 119.99852 * 354.94341 * 19 18 17 21 21 C 1.38655 * 119.99871 * 174.94588 * 19 18 17 22 22 N 1.31551 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47070 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46999 * 120.00011 * 23 21 19 26 26 H 1.48504 * 109.46948 * 239.99694 * 23 21 19 27 27 C 1.38885 * 119.86153 * 359.72533 * 17 16 15 28 28 C 1.38096 * 119.93086 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47160 * 300.00423 * 1 2 3 31 31 H 1.08999 * 109.46968 * 59.99869 * 1 2 3 32 32 H 1.00894 * 111.00104 * 321.04535 * 4 2 1 33 33 H 1.08997 * 109.47430 * 175.06006 * 7 5 4 34 34 H 1.09003 * 109.47324 * 55.05919 * 7 5 4 35 35 H 1.09000 * 109.47332 * 295.06888 * 7 5 4 36 36 H 1.08998 * 110.51402 * 237.28954 * 10 8 5 37 37 H 1.08999 * 110.50984 * 359.86307 * 10 8 5 38 38 H 1.08996 * 110.37259 * 142.80985 * 11 10 8 39 39 H 1.09004 * 110.36902 * 265.03727 * 11 10 8 40 40 H 1.09001 * 110.36561 * 281.68279 * 13 12 11 41 41 H 1.08993 * 110.36849 * 159.34291 * 13 12 11 42 42 H 1.07999 * 119.96098 * 359.97438 * 15 14 2 43 43 H 1.07999 * 120.03774 * 180.27118 * 16 15 14 44 44 H 0.96997 * 120.00347 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.03471 * 179.97438 * 27 17 16 46 46 H 1.07997 * 119.96826 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2226 -2.3469 6 1 1.2576 0.9329 -2.2907 7 6 3.4111 0.9808 -2.3224 8 6 1.9771 -0.5798 -3.6453 9 1 2.7715 -1.3242 -3.6988 10 6 0.5925 -1.2570 -3.7524 11 6 -0.0272 -0.6447 -5.0282 12 8 1.1030 -0.2120 -5.8164 13 6 2.0302 0.3616 -4.8691 14 6 2.0323 -0.7103 1.2305 15 6 2.0608 -2.0926 1.2660 16 6 2.5259 -2.7465 2.3899 17 6 2.9546 -2.0147 3.4896 18 8 3.4075 -2.6546 4.5979 19 6 3.7003 -1.8902 5.6694 20 1 3.6494 -0.8140 5.5951 21 6 4.0669 -2.4860 6.8666 22 7 4.1286 -3.7969 6.9572 23 14 4.4734 -1.4270 8.3507 24 1 4.3301 0.0065 7.9902 25 1 3.5437 -1.7539 9.4616 26 1 5.8701 -1.6917 8.7801 27 6 2.9194 -0.6268 3.4530 28 6 2.4590 0.0213 2.3238 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.4497 -1.4979 -1.4100 33 1 3.4960 1.5942 -3.2194 34 1 4.2355 0.2685 -2.2900 35 1 3.4485 1.6200 -1.4402 36 1 0.7024 -2.3360 -3.8611 37 1 -0.0160 -1.0222 -2.8791 38 1 -0.6016 -1.3965 -5.5694 39 1 -0.6609 0.2045 -4.7722 40 1 1.7135 1.3663 -4.5890 41 1 3.0362 0.3828 -5.2882 42 1 1.7228 -2.6612 0.4122 43 1 2.5521 -3.8259 2.4154 44 1 4.3847 -4.2137 7.7947 45 1 3.2517 -0.0549 4.3068 46 1 2.4310 1.1005 2.2949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252728729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:41 Heat of formation + Delta-G solvation = -56.211528 kcal Electronic energy + Delta-G solvation = -24821.083813 eV Core-core repulsion = 21289.952719 eV Total energy + Delta-G solvation = -3531.131094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12724 -39.10599 -37.69129 -36.08351 -33.47597 -32.17638 -31.03471 -30.19087 -29.25437 -28.05965 -27.74295 -25.38921 -23.92797 -22.61509 -22.25540 -21.75502 -20.15934 -19.96797 -17.90437 -17.03831 -16.86939 -16.53871 -15.87556 -15.25691 -14.95964 -14.65195 -14.46331 -13.99651 -13.76266 -13.66624 -13.52315 -13.31278 -13.07634 -12.88057 -12.74406 -12.61716 -12.29213 -12.22033 -11.76845 -11.70551 -11.61531 -11.50952 -11.20501 -11.14442 -11.12818 -10.74281 -10.65967 -10.52024 -10.38077 -10.37342 -10.11722 -9.29237 -8.80662 -8.38875 -8.11582 -7.11065 -6.42546 -4.01202 2.27337 2.36965 3.13186 3.14598 3.20140 3.63815 3.97409 3.98900 4.24288 4.47188 4.58179 4.64390 4.78037 4.94246 5.01064 5.07194 5.11094 5.14355 5.26620 5.30164 5.34159 5.38218 5.40309 5.41245 5.50640 5.57494 5.67641 5.67972 5.79477 5.79664 5.80935 5.96974 5.97874 6.13223 6.20163 6.27207 6.45329 6.46822 6.75224 6.89864 7.05018 7.11432 7.33813 7.40114 7.46286 7.49347 7.87693 8.02944 9.03482 9.74983 10.75847 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035784 B = 0.002471 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.289481 B =11326.475858 C =11511.849592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.141 3.859 3 H 0.075 0.925 4 N -0.674 5.674 5 C 0.093 3.907 6 H 0.043 0.957 7 C -0.143 4.143 8 C -0.123 4.123 9 H 0.093 0.907 10 C -0.157 4.157 11 C 0.046 3.954 12 O -0.378 6.378 13 C 0.052 3.948 14 C -0.165 4.165 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.153 3.847 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.233 4.233 28 C -0.068 4.068 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.339 0.661 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.269 0.731 45 H 0.125 0.875 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 8.764 -19.688 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.032 3.968 3 H 0.094 0.906 4 N -0.306 5.306 5 C -0.016 4.016 6 H 0.061 0.939 7 C -0.201 4.201 8 C -0.142 4.142 9 H 0.112 0.888 10 C -0.195 4.195 11 C -0.031 4.031 12 O -0.296 6.296 13 C -0.025 4.025 14 C -0.167 4.167 15 C -0.072 4.072 16 C -0.213 4.213 17 C 0.100 3.900 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.252 4.252 28 C -0.087 4.087 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.190 8.414 -19.527 22.145 hybrid contribution -0.762 0.656 0.921 1.363 sum -6.952 9.070 -18.606 21.835 Atomic orbital electron populations 1.22513 0.97431 1.02101 1.01501 1.20218 0.91621 0.96789 0.88196 0.90634 1.60679 1.57958 1.09137 1.02821 1.21514 0.97615 0.93621 0.88890 0.93907 1.21854 0.97298 0.99908 1.01056 1.22741 0.98218 0.98373 0.94908 0.88817 1.23070 0.96258 1.01488 0.98666 1.23390 0.89558 0.98543 0.91638 1.89128 1.29977 1.79617 1.30908 1.23487 0.94369 0.96062 0.88569 1.19045 1.09140 0.93507 0.94983 1.20289 0.97730 0.93390 0.95767 1.20202 1.08313 0.99290 0.93538 1.19387 0.91287 0.90915 0.88428 1.83981 1.70953 1.35280 1.18201 1.21359 1.47124 0.90745 0.87422 0.89102 1.25277 0.96908 0.96281 0.98126 1.70045 1.44517 1.08641 1.26733 0.85660 0.78376 0.79254 0.80205 1.19148 1.20185 1.20175 1.21105 1.09718 0.94400 0.99992 1.20529 0.97373 0.98023 0.92778 0.92377 0.91792 0.93536 0.84113 0.92836 0.91554 0.92539 0.90243 0.90499 0.89160 0.92439 0.92141 0.88895 0.87489 0.86760 0.92135 0.85718 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.12 37.16 0.34 -1.59 16 2 C 0.14 1.77 2.60 -68.87 -0.18 1.59 16 3 H 0.08 0.94 7.01 -51.93 -0.36 0.58 16 4 N -0.67 -7.53 5.51 -100.95 -0.56 -8.09 16 5 C 0.09 0.85 1.70 -67.71 -0.11 0.74 16 6 H 0.04 0.39 7.11 -51.92 -0.37 0.02 16 7 C -0.14 -1.34 9.24 37.15 0.34 -1.00 16 8 C -0.12 -1.01 2.80 -89.05 -0.25 -1.26 16 9 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 10 C -0.16 -1.17 5.93 -25.16 -0.15 -1.32 16 11 C 0.05 0.35 7.63 37.94 0.29 0.64 16 12 O -0.38 -3.79 11.65 -35.23 -0.41 -4.20 16 13 C 0.05 0.43 6.03 37.94 0.23 0.65 16 14 C -0.17 -2.73 4.96 -104.57 -0.52 -3.25 16 15 C -0.05 -0.94 9.31 -39.61 -0.37 -1.30 16 16 C -0.19 -4.12 9.99 -39.40 -0.39 -4.52 16 17 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.18 -5.20 9.76 0.02 0.00 -5.20 16 19 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 22 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 23 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 27 C -0.23 -5.07 9.17 -39.39 -0.36 -5.43 16 28 C -0.07 -1.24 9.66 -39.61 -0.38 -1.62 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.43 7.43 -51.93 -0.39 0.04 16 32 H 0.34 3.54 6.20 -39.30 -0.24 3.30 16 33 H 0.05 0.40 6.99 -51.93 -0.36 0.04 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.56 7.23 -51.93 -0.38 0.18 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.11 1.60 7.25 -52.49 -0.38 1.22 16 43 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 46 H 0.10 1.60 8.03 -52.49 -0.42 1.17 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -30.91 365.99 -8.50 -39.40 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.20 Total: 5.66 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -1.58 Total: -23.94 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.20 Total: -32.87 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.41 Total: -9.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.91 -8.50 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252728729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.810 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds