Wall clock time and date at job start Tue Mar 31 2020 09:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47419 * 2 1 4 4 N 1.46900 * 109.47370 * 239.99782 * 2 1 3 5 5 C 1.46904 * 111.00000 * 85.00251 * 4 2 1 6 6 H 1.09008 * 109.46861 * 324.99989 * 5 4 2 7 7 C 1.52993 * 109.47444 * 84.99946 * 5 4 2 8 8 C 1.52998 * 109.46986 * 205.00151 * 5 4 2 9 9 H 1.08995 * 110.46041 * 302.33394 * 8 5 4 10 10 C 1.54512 * 110.51149 * 64.93778 * 8 5 4 11 11 C 1.54484 * 104.06121 * 118.64442 * 10 8 5 12 12 O 1.44424 * 104.80569 * 23.97899 * 11 10 8 13 13 C 1.44434 * 105.27435 * 319.48849 * 12 11 10 14 14 C 1.50700 * 109.47103 * 119.99686 * 2 1 3 15 15 C 1.38305 * 119.92931 * 79.72977 * 14 2 1 16 16 C 1.38097 * 120.06905 * 179.72453 * 15 14 2 17 17 C 1.38877 * 119.93034 * 0.54710 * 16 15 14 18 18 O 1.35755 * 120.06989 * 179.74552 * 17 16 15 19 19 C 1.34835 * 116.99895 * 185.50003 * 18 17 16 20 20 H 1.08000 * 119.99852 * 354.94341 * 19 18 17 21 21 C 1.38655 * 119.99871 * 174.94588 * 19 18 17 22 22 N 1.31551 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47070 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46999 * 120.00011 * 23 21 19 26 26 H 1.48504 * 109.46948 * 239.99694 * 23 21 19 27 27 C 1.38885 * 119.86153 * 359.72533 * 17 16 15 28 28 C 1.38096 * 119.93086 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47160 * 300.00423 * 1 2 3 31 31 H 1.08999 * 109.46968 * 59.99869 * 1 2 3 32 32 H 1.00894 * 111.00104 * 321.04535 * 4 2 1 33 33 H 1.08997 * 109.47430 * 175.06006 * 7 5 4 34 34 H 1.09003 * 109.47324 * 55.05919 * 7 5 4 35 35 H 1.09000 * 109.47332 * 295.06888 * 7 5 4 36 36 H 1.08998 * 110.51402 * 237.28954 * 10 8 5 37 37 H 1.08999 * 110.50984 * 359.86307 * 10 8 5 38 38 H 1.08996 * 110.37259 * 142.80985 * 11 10 8 39 39 H 1.09004 * 110.36902 * 265.03727 * 11 10 8 40 40 H 1.09001 * 110.36561 * 281.68279 * 13 12 11 41 41 H 1.08993 * 110.36849 * 159.34291 * 13 12 11 42 42 H 1.07999 * 119.96098 * 359.97438 * 15 14 2 43 43 H 1.07999 * 120.03774 * 180.27118 * 16 15 14 44 44 H 0.96997 * 120.00347 * 180.02562 * 22 21 19 45 45 H 1.08002 * 120.03471 * 179.97438 * 27 17 16 46 46 H 1.07997 * 119.96826 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2226 -2.3469 6 1 1.2576 0.9329 -2.2907 7 6 3.4111 0.9808 -2.3224 8 6 1.9771 -0.5798 -3.6453 9 1 2.7715 -1.3242 -3.6988 10 6 0.5925 -1.2570 -3.7524 11 6 -0.0272 -0.6447 -5.0282 12 8 1.1030 -0.2120 -5.8164 13 6 2.0302 0.3616 -4.8691 14 6 2.0323 -0.7103 1.2305 15 6 2.0608 -2.0926 1.2660 16 6 2.5259 -2.7465 2.3899 17 6 2.9546 -2.0147 3.4896 18 8 3.4075 -2.6546 4.5979 19 6 3.7003 -1.8902 5.6694 20 1 3.6494 -0.8140 5.5951 21 6 4.0669 -2.4860 6.8666 22 7 4.1286 -3.7969 6.9572 23 14 4.4734 -1.4270 8.3507 24 1 4.3301 0.0065 7.9902 25 1 3.5437 -1.7539 9.4616 26 1 5.8701 -1.6917 8.7801 27 6 2.9194 -0.6268 3.4530 28 6 2.4590 0.0213 2.3238 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.4497 -1.4979 -1.4100 33 1 3.4960 1.5942 -3.2194 34 1 4.2355 0.2685 -2.2900 35 1 3.4485 1.6200 -1.4402 36 1 0.7024 -2.3360 -3.8611 37 1 -0.0160 -1.0222 -2.8791 38 1 -0.6016 -1.3965 -5.5694 39 1 -0.6609 0.2045 -4.7722 40 1 1.7135 1.3663 -4.5890 41 1 3.0362 0.3828 -5.2882 42 1 1.7228 -2.6612 0.4122 43 1 2.5521 -3.8259 2.4154 44 1 4.3847 -4.2137 7.7947 45 1 3.2517 -0.0549 4.3068 46 1 2.4310 1.1005 2.2949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252728729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:40 Heat of formation + Delta-G solvation = -75.915731 kcal Electronic energy + Delta-G solvation = -24821.938252 eV Core-core repulsion = 21289.952719 eV Total energy + Delta-G solvation = -3531.985533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98299 -40.57441 -39.00403 -37.38825 -34.62851 -34.02059 -31.79825 -31.70015 -30.30216 -29.19068 -28.57975 -27.34483 -24.79480 -23.78190 -23.41797 -22.85559 -21.36237 -20.87663 -19.72295 -18.81167 -17.61700 -17.36166 -16.69216 -16.37237 -16.31713 -15.98998 -15.72039 -15.49798 -15.17360 -15.11897 -14.45094 -14.32968 -14.31341 -14.04162 -13.88695 -13.52977 -13.49560 -13.46138 -13.00220 -12.93584 -12.66718 -12.48930 -12.35489 -12.28247 -12.14664 -12.06367 -11.83265 -11.78064 -11.57665 -11.30621 -11.12213 -10.77827 -10.74163 -9.72258 -9.27338 -8.82335 -8.45868 -6.13589 0.65377 0.76511 1.34845 1.43431 1.53259 2.18393 2.83228 3.04941 3.10993 3.27507 3.56355 3.63130 3.82502 3.97564 4.02723 4.12455 4.19143 4.23566 4.34929 4.36423 4.39750 4.43420 4.50037 4.60762 4.63913 4.74100 4.80118 4.82861 4.85512 4.89714 4.93661 5.01317 5.08064 5.12321 5.14629 5.18897 5.24380 5.31802 5.34368 5.45880 5.64833 5.75722 5.83594 5.86506 6.05556 6.23803 6.31609 6.56606 6.99242 7.82096 8.77998 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035784 B = 0.002471 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.289481 B =11326.475858 C =11511.849592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.146 3.854 3 H 0.085 0.915 4 N -0.685 5.685 5 C 0.100 3.900 6 H 0.054 0.946 7 C -0.144 4.144 8 C -0.118 4.118 9 H 0.083 0.917 10 C -0.154 4.154 11 C 0.041 3.959 12 O -0.402 6.402 13 C 0.051 3.949 14 C -0.138 4.138 15 C -0.046 4.046 16 C -0.207 4.207 17 C 0.109 3.891 18 O -0.236 6.236 19 C -0.411 4.411 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.019 2.981 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.242 4.242 28 C -0.069 4.069 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.345 0.655 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.108 0.892 44 H 0.272 0.728 45 H 0.115 0.885 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 11.305 -21.813 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.036 3.964 3 H 0.103 0.897 4 N -0.318 5.318 5 C -0.010 4.010 6 H 0.072 0.928 7 C -0.202 4.202 8 C -0.137 4.137 9 H 0.102 0.898 10 C -0.192 4.192 11 C -0.035 4.035 12 O -0.321 6.321 13 C -0.026 4.026 14 C -0.139 4.139 15 C -0.064 4.064 16 C -0.226 4.226 17 C 0.059 3.941 18 O -0.143 6.143 19 C -0.487 4.487 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.562 5.562 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.261 4.261 28 C -0.088 4.088 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.166 0.834 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.158 0.842 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.525 10.981 -21.715 25.471 hybrid contribution -0.468 -0.050 1.195 1.285 sum -7.993 10.931 -20.520 24.586 Atomic orbital electron populations 1.22448 0.95541 1.02534 1.02556 1.20171 0.92877 0.96589 0.86772 0.89651 1.60572 1.58240 1.09810 1.03157 1.21493 0.97780 0.93398 0.88294 0.92773 1.21867 0.96913 0.99705 1.01674 1.22645 0.98437 0.98131 0.94500 0.89813 1.23056 0.95758 1.01482 0.98877 1.23534 0.89177 0.99193 0.91589 1.89109 1.30937 1.79949 1.32141 1.23561 0.94482 0.96322 0.88203 1.19640 1.05134 0.93230 0.95939 1.20646 0.96244 0.94272 0.95263 1.20458 1.08708 0.99347 0.94068 1.19928 0.93308 0.92472 0.88364 1.83941 1.73973 1.36757 1.19651 1.21841 1.47407 0.91385 0.88062 0.88239 1.26589 0.96553 0.97792 1.01297 1.70191 1.47172 1.10911 1.27879 0.84527 0.78323 0.77804 0.75528 1.17486 1.19317 1.19377 1.21201 1.10243 0.93458 1.01198 1.20907 0.96207 0.99880 0.91762 0.92313 0.92277 0.91054 0.83446 0.90995 0.93027 0.93264 0.90174 0.89737 0.88355 0.91492 0.91174 0.88463 0.84173 0.87368 0.91913 0.86684 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.12 71.98 0.66 -2.31 16 2 C 0.15 3.04 2.60 44.17 0.11 3.15 16 3 H 0.09 1.71 7.01 -2.39 -0.02 1.70 16 4 N -0.69 -12.73 5.51 -473.31 -2.61 -15.33 16 5 C 0.10 1.45 1.70 44.91 0.08 1.53 16 6 H 0.05 0.72 7.11 -2.38 -0.02 0.70 16 7 C -0.14 -2.26 9.24 71.98 0.66 -1.59 16 8 C -0.12 -1.59 2.80 -9.78 -0.03 -1.62 16 9 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 10 C -0.15 -1.81 5.93 31.61 0.19 -1.62 16 11 C 0.04 0.52 7.63 72.49 0.55 1.07 16 12 O -0.40 -7.14 11.65 -148.98 -1.74 -8.88 16 13 C 0.05 0.69 6.03 72.49 0.44 1.13 16 14 C -0.14 -4.17 4.96 -19.83 -0.10 -4.26 16 15 C -0.05 -1.53 9.31 22.25 0.21 -1.33 16 16 C -0.21 -8.95 9.99 22.39 0.22 -8.73 16 17 C 0.11 5.54 6.65 22.58 0.15 5.69 16 18 O -0.24 -14.53 9.76 -22.84 -0.22 -14.75 16 19 C -0.41 -24.35 9.49 67.92 0.64 -23.71 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 21 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 22 N -0.92 -57.54 13.67 21.61 0.30 -57.24 16 23 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.24 -10.67 9.17 22.39 0.21 -10.46 16 28 C -0.07 -2.37 9.66 22.25 0.21 -2.15 16 29 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.93 7.43 -2.39 -0.02 0.91 16 32 H 0.35 5.81 6.20 -89.70 -0.56 5.25 16 33 H 0.07 0.85 6.99 -2.39 -0.02 0.84 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.84 7.49 -2.39 -0.02 0.83 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.87 7.23 -2.39 -0.02 0.85 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.07 0.81 7.68 -2.39 -0.02 0.79 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.14 3.73 7.25 -2.91 -0.02 3.71 16 43 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 46 H 0.14 3.76 8.03 -2.91 -0.02 3.73 16 Total: -1.00 -72.08 365.99 2.85 -69.23 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.42 Total: 27.68 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 4.68 Total: -46.20 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -2.31 Total: -72.58 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.96 Total: -23.63 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -72.08 2.85 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252728729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.689 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds