Wall clock time and date at job start Tue Mar 31 2020 08:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 O 1.42897 * 109.47008 * 119.99979 * 2 1 3 5 5 C 1.42894 * 114.00216 * 90.00235 * 4 2 1 6 6 C 1.52993 * 109.47637 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47477 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46883 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99919 * 269.99632 * 8 7 6 10 10 C 1.34780 * 120.00189 * 90.00603 * 8 7 6 11 11 O 1.21546 * 119.99411 * 4.44729 * 10 8 7 12 12 C 1.47880 * 120.00093 * 184.45571 * 10 8 7 13 13 C 1.39922 * 120.02720 * 142.23968 * 12 10 8 14 14 C 1.38324 * 120.36403 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.40818 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.04265 * 0.02562 * 15 14 13 17 17 C 1.41441 * 120.17963 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99588 * 147.41652 * 17 16 15 19 19 C 1.39932 * 119.99705 * 327.41472 * 17 16 15 20 20 N 1.30824 * 120.00322 * 351.21814 * 19 17 16 21 21 Si 1.86806 * 119.99779 * 171.21899 * 19 17 16 22 22 H 1.48500 * 109.47241 * 84.99092 * 21 19 17 23 23 H 1.48497 * 109.47087 * 204.99365 * 21 19 17 24 24 H 1.48500 * 109.47131 * 324.99150 * 21 19 17 25 25 C 1.38996 * 120.02524 * 322.25723 * 12 10 8 26 26 H 1.09003 * 109.46909 * 60.00113 * 1 2 3 27 27 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47224 * 300.00279 * 1 2 3 29 29 H 1.09006 * 109.46954 * 240.00129 * 2 1 3 30 30 H 1.08999 * 109.46929 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47166 * 299.99730 * 3 2 1 32 32 H 1.08995 * 109.47329 * 59.99785 * 3 2 1 33 33 H 1.09001 * 109.47061 * 59.99388 * 5 4 2 34 34 H 1.08999 * 109.47245 * 300.00199 * 5 4 2 35 35 H 1.09001 * 109.47247 * 59.99683 * 6 5 4 36 36 H 1.09002 * 109.46845 * 300.00009 * 6 5 4 37 37 H 1.09001 * 109.47035 * 60.00289 * 7 6 5 38 38 H 1.08996 * 109.46891 * 300.00090 * 7 6 5 39 39 H 1.08996 * 109.47449 * 264.44601 * 9 8 7 40 40 H 1.09003 * 109.47146 * 24.44968 * 9 8 7 41 41 H 1.09006 * 109.47136 * 144.44710 * 9 8 7 42 42 H 1.08000 * 119.81598 * 359.97438 * 13 12 10 43 43 H 1.07992 * 119.79725 * 180.02562 * 14 13 12 44 44 H 1.08008 * 119.98412 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00063 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.20185 * 359.70378 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0781 0.9887 6 6 2.7091 -2.6924 2.2941 7 6 2.9160 -4.1963 2.1036 8 7 3.4039 -4.7843 3.3535 9 6 4.8437 -4.8673 3.6109 10 6 2.5282 -5.2491 4.2666 11 8 1.3382 -5.2547 4.0194 12 6 3.0153 -5.7520 5.5692 13 6 2.2824 -5.5021 6.7346 14 6 2.7318 -5.9688 7.9568 15 6 3.9053 -6.6852 8.0408 16 6 4.6561 -6.9465 6.8793 17 6 5.8612 -7.6823 6.9622 18 1 6.1606 -8.3219 6.1452 19 6 6.6655 -7.5814 8.1029 20 7 6.3969 -6.6831 9.0153 21 14 8.1226 -8.7295 8.3229 22 1 9.3031 -8.1722 7.6150 23 1 8.4314 -8.8659 9.7689 24 1 7.7916 -10.0630 7.7595 25 6 4.2017 -6.4731 5.6368 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 2.9320 -2.2466 0.1986 34 1 1.2539 -2.5433 0.7124 35 1 1.9776 -2.5239 3.0844 36 1 3.6555 -2.2272 2.5699 37 1 3.6474 -4.3652 1.3132 38 1 1.9694 -4.6612 1.8281 39 1 5.2089 -5.8520 3.3191 40 1 5.3610 -4.1018 3.0325 41 1 5.0327 -4.7099 4.6729 42 1 1.3612 -4.9410 6.6797 43 1 2.1586 -5.7709 8.8504 44 1 4.2496 -7.0467 8.9986 45 1 6.9547 -6.6130 9.8058 46 1 4.7683 -6.6722 4.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265803458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:45 Heat of formation + Delta-G solvation = -72.652783 kcal Electronic energy + Delta-G solvation = -24436.842253 eV Core-core repulsion = 20904.998213 eV Total energy + Delta-G solvation = -3531.844041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.65712 -38.59200 -37.14788 -35.59048 -33.75011 -33.49748 -31.73580 -29.94119 -29.56391 -27.52222 -26.77617 -25.39244 -25.27073 -22.37758 -21.64228 -21.15502 -20.78061 -19.10636 -17.36067 -17.02312 -16.17114 -15.93568 -15.63692 -15.36066 -15.07300 -14.82211 -14.69870 -14.12153 -13.70262 -13.35527 -13.15112 -12.98766 -12.74532 -12.61100 -12.56922 -12.37546 -12.32941 -11.98096 -11.80054 -11.66815 -11.64866 -11.33990 -11.19824 -11.02184 -10.89518 -10.78279 -10.68855 -10.51037 -10.24441 -9.71313 -9.52962 -9.27911 -9.07001 -8.34728 -7.60905 -7.44509 -6.75631 -4.46866 2.27529 2.73024 3.05173 3.08032 3.11405 3.18792 3.65379 3.68318 3.91729 4.60443 4.60977 4.74993 4.85743 4.90931 5.09795 5.16965 5.20625 5.28659 5.31561 5.49191 5.50604 5.52280 5.52859 5.56703 5.60008 5.67615 5.85673 5.90090 5.94857 6.10974 6.16571 6.21443 6.27989 6.37036 6.74745 6.84638 6.90167 7.01074 7.11306 7.17887 7.34893 7.60280 7.75956 7.90467 7.93661 8.09381 8.50036 8.73402 8.80133 8.83290 10.20605 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.002575 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.747677 B =10873.208449 C =11339.230151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.382 6.382 5 C 0.068 3.932 6 C -0.134 4.134 7 C 0.121 3.879 8 N -0.617 5.617 9 C 0.077 3.923 10 C 0.568 3.432 11 O -0.554 6.554 12 C -0.119 4.119 13 C -0.172 4.172 14 C -0.118 4.118 15 C -0.128 4.128 16 C 0.101 3.899 17 C -0.468 4.468 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.808 5.808 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.189 4.189 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.280 0.720 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 9.349 -14.145 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.302 6.302 5 C -0.009 4.009 6 C -0.173 4.173 7 C -0.003 4.003 8 N -0.350 5.350 9 C -0.066 4.066 10 C 0.360 3.640 11 O -0.432 6.432 12 C -0.121 4.121 13 C -0.192 4.192 14 C -0.136 4.136 15 C -0.148 4.148 16 C 0.099 3.901 17 C -0.499 4.499 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.434 5.434 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.208 4.208 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.091 0.909 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.171 9.520 -13.881 17.128 hybrid contribution 0.752 -0.514 -0.034 0.911 sum -2.419 9.006 -13.915 16.751 Atomic orbital electron populations 1.22309 0.96075 1.02485 1.02496 1.22067 0.93658 0.93791 0.88257 1.21862 1.01779 0.94615 1.02442 1.87944 1.86521 1.20242 1.35470 1.22425 0.99337 0.81433 0.97743 1.21899 1.02676 0.95388 0.97350 1.21200 1.00948 0.91942 0.86182 1.47719 1.07355 1.61290 1.18651 1.22200 0.79383 1.00989 1.04017 1.18982 0.85153 0.75667 0.84197 1.90663 1.16426 1.56774 1.79366 1.19273 0.97561 1.03988 0.91327 1.20411 1.00098 1.06960 0.91733 1.20688 0.97267 0.99935 0.95717 1.21541 0.93038 1.00449 0.99732 1.17557 0.92074 0.90070 0.90416 1.19459 1.04100 1.24210 1.02105 0.90473 1.25837 0.99001 0.94536 0.94807 1.69750 1.36899 1.28237 1.08558 0.86291 0.80915 0.81178 0.78100 1.19472 1.20276 1.18671 1.21629 0.96675 1.03967 0.98576 0.91800 0.92390 0.91713 0.92385 0.92019 0.91398 0.91747 0.93403 0.93219 0.90612 0.90965 0.90799 0.89879 0.92262 0.92117 0.88961 0.88494 0.88574 0.86189 0.90908 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.53 37.16 0.35 -1.12 16 2 C 0.08 0.74 3.34 -26.73 -0.09 0.65 16 3 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 4 O -0.38 -4.68 9.99 -35.23 -0.35 -5.03 16 5 C 0.07 0.75 5.75 37.15 0.21 0.96 16 6 C -0.13 -1.76 5.91 -26.74 -0.16 -1.92 16 7 C 0.12 1.63 5.42 -4.04 -0.02 1.61 16 8 N -0.62 -10.38 2.87 -182.68 -0.52 -10.91 16 9 C 0.08 1.15 8.85 59.85 0.53 1.68 16 10 C 0.57 11.92 7.37 -12.31 -0.09 11.83 16 11 O -0.55 -12.83 16.43 5.33 0.09 -12.74 16 12 C -0.12 -2.68 5.27 -105.04 -0.55 -3.24 16 13 C -0.17 -3.96 9.62 -38.92 -0.37 -4.33 16 14 C -0.12 -2.71 10.01 -39.73 -0.40 -3.10 16 15 C -0.13 -3.19 8.63 -38.81 -0.33 -3.53 16 16 C 0.10 2.54 5.51 -106.87 -0.59 1.95 16 17 C -0.47 -11.71 9.04 -37.73 -0.34 -12.05 16 18 H 0.08 1.85 7.86 -52.49 -0.41 1.43 16 19 C 0.07 1.78 5.26 -17.35 -0.09 1.69 16 20 N -0.81 -20.14 11.00 55.55 0.61 -19.53 16 21 Si 0.91 18.06 29.57 -169.99 -5.03 13.04 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 25 C -0.19 -4.31 7.31 -38.44 -0.28 -4.59 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.78 8.07 -51.93 -0.42 0.37 16 38 H 0.08 1.21 7.37 -51.93 -0.38 0.82 16 39 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 40 H 0.06 0.72 8.03 -51.93 -0.42 0.31 16 41 H 0.09 1.61 5.87 -51.93 -0.31 1.30 16 42 H 0.10 2.14 8.03 -52.49 -0.42 1.72 16 43 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 44 H 0.12 3.08 6.44 -52.48 -0.34 2.74 16 45 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 46 H 0.11 2.27 5.14 -52.49 -0.27 2.00 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -28.94 376.11 -8.88 -37.83 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.48 Total: 6.00 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.87 Total: -14.32 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.09 Total: -30.43 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.26 Total: -17.78 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.94 -8.88 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265803458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.827 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds