Wall clock time and date at job start Tue Mar 31 2020 08:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 O 1.42897 * 109.47008 * 119.99979 * 2 1 3 5 5 C 1.42894 * 114.00216 * 90.00235 * 4 2 1 6 6 C 1.52993 * 109.47637 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47477 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46883 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99919 * 269.99632 * 8 7 6 10 10 C 1.34780 * 120.00189 * 90.00603 * 8 7 6 11 11 O 1.21546 * 119.99411 * 4.44729 * 10 8 7 12 12 C 1.47880 * 120.00093 * 184.45571 * 10 8 7 13 13 C 1.39922 * 120.02720 * 142.23968 * 12 10 8 14 14 C 1.38324 * 120.36403 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.40818 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.04265 * 0.02562 * 15 14 13 17 17 C 1.41441 * 120.17963 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99588 * 147.41652 * 17 16 15 19 19 C 1.39932 * 119.99705 * 327.41472 * 17 16 15 20 20 N 1.30824 * 120.00322 * 351.21814 * 19 17 16 21 21 Si 1.86806 * 119.99779 * 171.21899 * 19 17 16 22 22 H 1.48500 * 109.47241 * 84.99092 * 21 19 17 23 23 H 1.48497 * 109.47087 * 204.99365 * 21 19 17 24 24 H 1.48500 * 109.47131 * 324.99150 * 21 19 17 25 25 C 1.38996 * 120.02524 * 322.25723 * 12 10 8 26 26 H 1.09003 * 109.46909 * 60.00113 * 1 2 3 27 27 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47224 * 300.00279 * 1 2 3 29 29 H 1.09006 * 109.46954 * 240.00129 * 2 1 3 30 30 H 1.08999 * 109.46929 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47166 * 299.99730 * 3 2 1 32 32 H 1.08995 * 109.47329 * 59.99785 * 3 2 1 33 33 H 1.09001 * 109.47061 * 59.99388 * 5 4 2 34 34 H 1.08999 * 109.47245 * 300.00199 * 5 4 2 35 35 H 1.09001 * 109.47247 * 59.99683 * 6 5 4 36 36 H 1.09002 * 109.46845 * 300.00009 * 6 5 4 37 37 H 1.09001 * 109.47035 * 60.00289 * 7 6 5 38 38 H 1.08996 * 109.46891 * 300.00090 * 7 6 5 39 39 H 1.08996 * 109.47449 * 264.44601 * 9 8 7 40 40 H 1.09003 * 109.47146 * 24.44968 * 9 8 7 41 41 H 1.09006 * 109.47136 * 144.44710 * 9 8 7 42 42 H 1.08000 * 119.81598 * 359.97438 * 13 12 10 43 43 H 1.07992 * 119.79725 * 180.02562 * 14 13 12 44 44 H 1.08008 * 119.98412 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00063 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.20185 * 359.70378 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0781 0.9887 6 6 2.7091 -2.6924 2.2941 7 6 2.9160 -4.1963 2.1036 8 7 3.4039 -4.7843 3.3535 9 6 4.8437 -4.8673 3.6109 10 6 2.5282 -5.2491 4.2666 11 8 1.3382 -5.2547 4.0194 12 6 3.0153 -5.7520 5.5692 13 6 2.2824 -5.5021 6.7346 14 6 2.7318 -5.9688 7.9568 15 6 3.9053 -6.6852 8.0408 16 6 4.6561 -6.9465 6.8793 17 6 5.8612 -7.6823 6.9622 18 1 6.1606 -8.3219 6.1452 19 6 6.6655 -7.5814 8.1029 20 7 6.3969 -6.6831 9.0153 21 14 8.1226 -8.7295 8.3229 22 1 9.3031 -8.1722 7.6150 23 1 8.4314 -8.8659 9.7689 24 1 7.7916 -10.0630 7.7595 25 6 4.2017 -6.4731 5.6368 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 2.9320 -2.2466 0.1986 34 1 1.2539 -2.5433 0.7124 35 1 1.9776 -2.5239 3.0844 36 1 3.6555 -2.2272 2.5699 37 1 3.6474 -4.3652 1.3132 38 1 1.9694 -4.6612 1.8281 39 1 5.2089 -5.8520 3.3191 40 1 5.3610 -4.1018 3.0325 41 1 5.0327 -4.7099 4.6729 42 1 1.3612 -4.9410 6.6797 43 1 2.1586 -5.7709 8.8504 44 1 4.2496 -7.0467 8.9986 45 1 6.9547 -6.6130 9.8058 46 1 4.7683 -6.6722 4.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265803458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:44 Heat of formation + Delta-G solvation = -87.401994 kcal Electronic energy + Delta-G solvation = -24437.481827 eV Core-core repulsion = 20904.998213 eV Total energy + Delta-G solvation = -3532.483614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22050 -39.45376 -38.89206 -37.00114 -35.48621 -34.53838 -32.80699 -31.78724 -31.18001 -28.20084 -28.00469 -27.11955 -26.64782 -23.79418 -22.74104 -22.54631 -22.10798 -20.69332 -19.00447 -18.00475 -17.61044 -17.37878 -16.91995 -16.61007 -16.55191 -16.47673 -15.76639 -15.21997 -15.11712 -14.84218 -14.50594 -14.31120 -14.02980 -13.95062 -13.64830 -13.52862 -13.35062 -13.21438 -13.03665 -12.93528 -12.81181 -12.65553 -12.49760 -12.40730 -12.25348 -12.20292 -11.97604 -11.82794 -11.57793 -11.34248 -11.06711 -10.75763 -10.51289 -9.74619 -9.43219 -9.31373 -8.56462 -6.37380 0.48126 0.93518 1.43761 1.49889 1.56369 1.83276 2.08437 2.25827 2.75211 2.79208 3.63512 3.68559 3.92678 3.95142 4.10671 4.16937 4.19585 4.29313 4.30193 4.39091 4.41768 4.47983 4.53520 4.59759 4.69082 4.73447 4.86695 4.90179 4.93808 4.95825 5.00234 5.01358 5.03578 5.15778 5.17831 5.28175 5.32422 5.34172 5.47515 5.62850 5.79329 5.97422 6.05066 6.21078 6.32627 6.34256 6.62190 6.93893 6.94440 7.14785 8.41537 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.002575 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.747677 B =10873.208449 C =11339.230151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.410 6.410 5 C 0.071 3.929 6 C -0.126 4.126 7 C 0.119 3.881 8 N -0.608 5.608 9 C 0.074 3.926 10 C 0.563 3.437 11 O -0.584 6.584 12 C -0.124 4.124 13 C -0.186 4.186 14 C -0.116 4.116 15 C -0.152 4.152 16 C 0.074 3.926 17 C -0.494 4.494 18 H 0.082 0.918 19 C 0.034 3.966 20 N -0.838 5.838 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.260 1.260 25 C -0.183 4.183 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.286 0.714 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 9.588 -16.422 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 C -0.205 4.205 4 O -0.330 6.330 5 C -0.006 4.006 6 C -0.165 4.165 7 C -0.003 4.003 8 N -0.339 5.339 9 C -0.068 4.068 10 C 0.354 3.646 11 O -0.465 6.465 12 C -0.127 4.127 13 C -0.206 4.206 14 C -0.134 4.134 15 C -0.172 4.172 16 C 0.072 3.928 17 C -0.524 4.524 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.465 5.465 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.184 1.184 25 C -0.202 4.202 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.759 9.784 -16.188 18.996 hybrid contribution 0.278 -0.496 0.618 0.840 sum -1.481 9.288 -15.569 18.190 Atomic orbital electron populations 1.22309 0.95793 1.02209 1.02945 1.22321 0.93997 0.94361 0.87873 1.21880 1.01697 0.93927 1.03018 1.87911 1.86903 1.20752 1.37424 1.22393 1.00130 0.81083 0.96973 1.21777 1.01789 0.95336 0.97611 1.21457 1.01729 0.91697 0.85434 1.47772 1.07673 1.59696 1.18729 1.22284 0.78377 1.03045 1.03065 1.18782 0.85230 0.76176 0.84403 1.90641 1.17594 1.58354 1.79937 1.19564 0.97302 1.03462 0.92411 1.20609 1.00552 1.07339 0.92121 1.20887 0.96802 0.99056 0.96693 1.21508 0.94162 1.02199 0.99345 1.17920 0.92686 0.90824 0.91338 1.19722 1.04569 1.24955 1.03162 0.90006 1.26676 1.01570 0.95623 0.94062 1.69824 1.38152 1.29409 1.09089 0.85203 0.77405 0.78883 0.78152 1.18533 1.19799 1.18402 1.21802 0.96695 1.03135 0.98583 0.89628 0.93022 0.92996 0.90676 0.92141 0.89148 0.92860 0.90626 0.93097 0.94240 0.90686 0.86548 0.90924 0.91157 0.88195 0.91718 0.88000 0.86427 0.87604 0.90343 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.53 71.98 0.69 -2.02 16 2 C 0.07 1.18 3.34 30.60 0.10 1.28 16 3 C -0.15 -2.05 9.56 71.98 0.69 -1.36 16 4 O -0.41 -9.54 9.99 -148.98 -1.49 -11.03 16 5 C 0.07 1.43 5.75 71.98 0.41 1.84 16 6 C -0.13 -3.15 5.91 30.59 0.18 -2.97 16 7 C 0.12 2.95 5.42 86.38 0.47 3.42 16 8 N -0.61 -19.57 2.87 -850.15 -2.44 -22.02 16 9 C 0.07 2.05 8.85 127.77 1.13 3.19 16 10 C 0.56 23.62 7.37 86.80 0.64 24.26 16 11 O -0.58 -27.37 16.43 -3.86 -0.06 -27.43 16 12 C -0.12 -5.70 5.27 -20.13 -0.11 -5.80 16 13 C -0.19 -8.74 9.62 22.70 0.22 -8.52 16 14 C -0.12 -5.46 10.01 22.17 0.22 -5.24 16 15 C -0.15 -7.83 8.63 22.77 0.20 -7.63 16 16 C 0.07 3.82 5.51 -21.32 -0.12 3.70 16 17 C -0.49 -24.90 9.04 23.47 0.21 -24.69 16 18 H 0.08 3.91 7.86 -2.91 -0.02 3.88 16 19 C 0.03 1.63 5.26 85.25 0.45 2.08 16 20 N -0.84 -42.32 11.00 21.82 0.24 -42.08 16 21 Si 0.98 36.57 29.57 68.60 2.03 38.60 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 23 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 25 C -0.18 -8.39 7.31 23.01 0.17 -8.22 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.85 7.87 -2.39 -0.02 0.83 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.98 7.79 -2.38 -0.02 0.96 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.05 1.00 7.87 -2.39 -0.02 0.98 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.96 8.07 -2.39 -0.02 1.94 16 38 H 0.07 2.01 7.37 -2.39 -0.02 1.99 16 39 H 0.07 1.83 6.79 -2.39 -0.02 1.81 16 40 H 0.10 2.01 8.03 -2.39 -0.02 1.99 16 41 H 0.06 2.20 5.87 -2.38 -0.01 2.19 16 42 H 0.10 4.60 8.03 -2.91 -0.02 4.58 16 43 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 44 H 0.11 5.65 6.44 -2.91 -0.02 5.63 16 45 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 46 H 0.13 5.27 5.14 -2.91 -0.01 5.25 16 Total: -1.00 -64.26 376.11 4.78 -59.48 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.95 Total: 31.14 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 5.55 Total: -26.67 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -2.20 Total: -64.09 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.55 Total: -38.46 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -64.26 4.78 -59.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265803458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.919 kcal (2) G-P(sol) polarization free energy of solvation -64.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds