Wall clock time and date at job start Tue Mar 31 2020 09:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46856 * 2 1 4 4 N 1.46901 * 109.46729 * 240.00196 * 2 1 3 5 5 C 1.46897 * 111.00123 * 89.19160 * 4 2 1 6 6 H 1.08997 * 109.61553 * 320.96117 * 5 4 2 7 7 C 1.53178 * 109.54340 * 200.74201 * 5 4 2 8 8 C 1.53102 * 109.21595 * 183.18390 * 7 5 4 9 9 O 1.42908 * 109.41577 * 57.57193 * 8 7 5 10 10 C 1.42905 * 114.09776 * 298.84805 * 9 8 7 11 11 H 1.09002 * 109.47683 * 301.16233 * 10 9 8 12 12 C 1.53002 * 109.47913 * 181.13952 * 10 9 8 13 13 C 1.53092 * 109.41864 * 61.15367 * 10 9 8 14 14 C 1.50693 * 109.47512 * 120.00193 * 2 1 3 15 15 C 1.38308 * 119.93112 * 79.72351 * 14 2 1 16 16 C 1.38101 * 120.06982 * 179.72642 * 15 14 2 17 17 C 1.38887 * 119.92489 * 0.55117 * 16 15 14 18 18 O 1.35749 * 120.06592 * 179.74798 * 17 16 15 19 19 C 1.34826 * 117.00382 * 174.13680 * 18 17 16 20 20 H 1.07997 * 119.99657 * 5.08406 * 19 18 17 21 21 C 1.38653 * 120.00415 * 185.09096 * 19 18 17 22 22 N 1.31557 * 119.99847 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00021 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47002 * 59.99857 * 23 21 19 25 25 H 1.48499 * 109.46842 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47079 * 299.99847 * 23 21 19 27 27 C 1.38872 * 119.86636 * 359.72484 * 17 16 15 28 28 C 1.38098 * 119.92866 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47172 * 184.95648 * 1 2 3 30 30 H 1.08997 * 109.46972 * 304.95146 * 1 2 3 31 31 H 1.08996 * 109.47207 * 64.95835 * 1 2 3 32 32 H 1.00899 * 110.99967 * 213.14372 * 4 2 1 33 33 H 1.08995 * 109.52535 * 63.24875 * 7 5 4 34 34 H 1.08995 * 109.52041 * 303.11305 * 7 5 4 35 35 H 1.08993 * 109.48006 * 177.56087 * 8 7 5 36 36 H 1.08997 * 109.47610 * 297.58521 * 8 7 5 37 37 H 1.08994 * 109.47039 * 59.99936 * 12 10 9 38 38 H 1.08997 * 109.46697 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47108 * 299.99616 * 12 10 9 40 40 H 1.09003 * 109.52017 * 62.29380 * 13 10 9 41 41 H 1.08995 * 109.52352 * 182.42157 * 13 10 9 42 42 H 1.08004 * 119.96441 * 0.02562 * 15 14 2 43 43 H 1.07992 * 120.03729 * 180.27283 * 16 15 14 44 44 H 0.96998 * 120.00086 * 180.02562 * 22 21 19 45 45 H 1.07997 * 120.03636 * 180.02562 * 27 17 16 46 46 H 1.08007 * 119.96355 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.1768 0.2437 -2.3205 6 1 1.3544 0.9590 -2.3180 7 6 2.1761 -0.5331 -3.6408 8 6 2.4198 0.4395 -4.7978 9 8 3.6572 1.1238 -4.5906 10 6 3.6983 1.9061 -3.3954 11 1 2.9019 2.6500 -3.4204 12 6 5.0523 2.6114 -3.2936 13 6 3.5060 0.9925 -2.1821 14 6 2.0324 -0.7104 1.2303 15 6 2.0609 -2.0927 1.2658 16 6 2.5261 -2.7467 2.3897 17 6 2.9548 -2.0147 3.4895 18 8 3.4078 -2.6547 4.5977 19 6 3.9214 -1.8878 5.5805 20 1 3.8838 -0.8114 5.5009 21 6 4.4979 -2.4810 6.6932 22 7 4.5433 -3.7922 6.7903 23 14 5.2101 -1.4183 8.0545 24 1 4.1412 -0.5569 8.6205 25 1 5.7622 -2.2883 9.1239 26 1 6.2925 -0.5653 7.5015 27 6 2.9196 -0.6269 3.4529 28 6 2.4582 0.0211 2.3241 29 1 -0.3634 -1.0239 0.0888 30 1 -0.3633 0.5887 0.8423 31 1 -0.3633 0.4350 -0.9310 32 1 2.8837 -1.1775 -1.0096 33 1 1.2120 -1.0236 -3.7743 34 1 2.9670 -1.2828 -3.6226 35 1 2.4634 -0.1146 -5.7353 36 1 1.6066 1.1639 -4.8410 37 1 5.1894 3.2611 -4.1579 38 1 5.0832 3.2084 -2.3822 39 1 5.8485 1.8674 -3.2682 40 1 4.3243 0.2741 -2.1338 41 1 3.4940 1.5928 -1.2724 42 1 1.7235 -2.6613 0.4118 43 1 2.5522 -3.8260 2.4152 44 1 4.9462 -4.2072 7.5690 45 1 3.2527 -0.0551 4.3064 46 1 2.4310 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271767242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:39 Heat of formation + Delta-G solvation = -62.144094 kcal Electronic energy + Delta-G solvation = -24877.231809 eV Core-core repulsion = 21345.843460 eV Total energy + Delta-G solvation = -3531.388350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96516 -39.11628 -37.47604 -35.73821 -33.01722 -32.92582 -32.14472 -30.24516 -29.30578 -27.97035 -27.30884 -25.42359 -24.16518 -22.46807 -22.20138 -21.53757 -20.48836 -19.91243 -17.95549 -17.07651 -16.53972 -16.36909 -15.76821 -15.21275 -14.84399 -14.56520 -14.47691 -14.35894 -13.84034 -13.74791 -13.61540 -13.10484 -12.85025 -12.75013 -12.63973 -12.53745 -12.39586 -12.15559 -11.89909 -11.69307 -11.53456 -11.42590 -11.30717 -11.25368 -11.05691 -10.76033 -10.67092 -10.49201 -10.42891 -10.32224 -9.75888 -9.36180 -8.84389 -8.35851 -8.19429 -7.20109 -6.46964 -4.06076 2.20089 2.27801 3.11307 3.12238 3.15249 3.53525 3.94820 4.08875 4.48268 4.53977 4.61323 4.69242 4.91714 4.96708 5.06616 5.08924 5.17982 5.19709 5.27563 5.30672 5.39489 5.42421 5.48594 5.55259 5.66382 5.66923 5.73777 5.79424 5.85524 5.91017 5.92585 5.98342 6.02887 6.08572 6.21133 6.37474 6.45008 6.70597 6.85032 7.01509 7.01955 7.04299 7.24334 7.39218 7.41599 7.51995 7.80913 7.97866 8.98478 9.68675 10.70958 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.002755 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.813001 B =10162.394813 C =10741.068584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.142 3.858 3 H 0.042 0.958 4 N -0.677 5.677 5 C 0.087 3.913 6 H 0.076 0.924 7 C -0.143 4.143 8 C 0.063 3.937 9 O -0.382 6.382 10 C 0.091 3.909 11 H 0.055 0.945 12 C -0.146 4.146 13 C -0.181 4.181 14 C -0.194 4.194 15 C -0.057 4.057 16 C -0.194 4.194 17 C 0.155 3.845 18 O -0.177 6.177 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.234 4.234 28 C -0.065 4.065 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.347 0.653 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.271 0.729 45 H 0.126 0.874 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 10.691 -18.762 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.033 3.967 3 H 0.060 0.940 4 N -0.308 5.308 5 C -0.023 4.023 6 H 0.094 0.906 7 C -0.182 4.182 8 C -0.015 4.015 9 O -0.302 6.302 10 C 0.033 3.967 11 H 0.073 0.927 12 C -0.203 4.203 13 C -0.220 4.220 14 C -0.195 4.195 15 C -0.076 4.076 16 C -0.214 4.214 17 C 0.101 3.899 18 O -0.081 6.081 19 C -0.469 4.469 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.084 4.084 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.143 0.857 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.437 10.033 -18.816 21.780 hybrid contribution 0.919 1.064 1.307 1.920 sum -3.518 11.097 -17.509 21.025 Atomic orbital electron populations 1.21778 0.94632 1.02283 1.00230 1.20149 0.95018 0.94696 0.86847 0.93958 1.60740 1.36159 1.28327 1.05553 1.21619 0.95617 0.93457 0.91641 0.90600 1.22179 1.03331 0.98800 0.93842 1.22576 0.86273 0.94237 0.98380 1.87923 1.36091 1.64347 1.41797 1.22018 0.98244 0.91947 0.84512 0.92671 1.21776 0.95918 1.00420 1.02187 1.23012 0.99775 1.00422 0.98831 1.19290 1.10249 0.93789 0.96203 1.20488 0.97122 0.93372 0.96577 1.20254 1.08741 0.99436 0.92929 1.19421 0.91965 0.90916 0.87552 1.83978 1.67041 1.35111 1.21924 1.21271 1.37904 0.90662 0.97085 0.89166 1.25286 0.96722 0.96312 0.98145 1.70027 1.41528 1.08726 1.29437 0.85790 0.79288 0.78930 0.79482 1.19506 1.20238 1.19501 1.21112 1.09811 0.94437 1.00016 1.20572 0.96975 0.98052 0.92778 0.92054 0.92833 0.93526 0.83357 0.90226 0.90972 0.88831 0.93417 0.91966 0.91101 0.91737 0.90759 0.90897 0.86353 0.86573 0.91935 0.85658 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.44 37.16 0.35 -1.27 16 2 C 0.14 1.85 2.61 -68.87 -0.18 1.67 16 3 H 0.04 0.54 6.74 -51.93 -0.35 0.19 16 4 N -0.68 -8.01 5.50 -100.76 -0.55 -8.56 16 5 C 0.09 0.88 2.38 -67.53 -0.16 0.72 16 6 H 0.08 0.76 7.44 -51.93 -0.39 0.38 16 7 C -0.14 -1.30 5.75 -26.59 -0.15 -1.46 16 8 C 0.06 0.53 6.84 37.21 0.25 0.78 16 9 O -0.38 -4.07 10.41 -35.23 -0.37 -4.44 16 10 C 0.09 0.86 3.27 -26.68 -0.09 0.77 16 11 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 12 C -0.15 -1.23 9.56 37.16 0.36 -0.87 16 13 C -0.18 -1.81 4.65 -26.59 -0.12 -1.94 16 14 C -0.19 -3.18 4.72 -104.58 -0.49 -3.67 16 15 C -0.06 -1.00 8.91 -39.61 -0.35 -1.35 16 16 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 17 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.18 -5.05 9.76 0.06 0.00 -5.05 16 19 C -0.39 -10.96 9.49 30.89 0.29 -10.66 16 20 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 23 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 28 C -0.06 -1.16 9.66 -39.61 -0.38 -1.55 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 32 H 0.35 4.41 7.61 -39.29 -0.30 4.11 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 42 H 0.12 1.83 7.71 -52.48 -0.40 1.43 16 43 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 46 H 0.10 1.59 8.03 -52.48 -0.42 1.16 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -29.77 367.99 -8.84 -38.61 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.41 Total: 7.20 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -1.79 Total: -24.21 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.20 Total: -33.07 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.37 Total: -9.49 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.77 -8.84 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271767242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.533 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds