Wall clock time and date at job start Tue Mar 31 2020 09:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.45123 * 2 1 4 4 C 1.53034 * 109.46606 * 240.02146 * 2 1 3 5 5 C 1.53117 * 109.28090 * 180.80521 * 4 2 1 6 6 C 1.53120 * 109.16031 * 57.65128 * 5 4 2 7 7 C 1.53035 * 109.27971 * 302.34868 * 6 5 4 8 8 H 1.08993 * 109.46283 * 299.16208 * 7 6 5 9 9 C 1.53000 * 109.46340 * 179.19467 * 7 6 5 10 10 O 1.42908 * 109.47187 * 304.76023 * 9 7 6 11 11 N 1.46845 * 109.52623 * 59.17942 * 7 6 5 12 12 C 1.46903 * 111.00414 * 174.15908 * 11 7 6 13 13 C 1.50703 * 109.46743 * 59.83498 * 12 11 7 14 14 C 1.38296 * 119.93034 * 266.45847 * 13 12 11 15 15 C 1.38101 * 120.06889 * 179.72563 * 14 13 12 16 16 C 1.38883 * 119.92923 * 0.57185 * 15 14 13 17 17 O 1.35755 * 120.06746 * 179.68211 * 16 15 14 18 18 C 1.34833 * 116.99426 * 185.75330 * 17 16 15 19 19 H 1.07996 * 120.00357 * 354.92991 * 18 17 16 20 20 C 1.38655 * 119.99504 * 174.93469 * 18 17 16 21 21 N 1.31558 * 119.99790 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00025 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47057 * 90.00361 * 22 20 18 24 24 H 1.48499 * 109.47427 * 210.00147 * 22 20 18 25 25 H 1.48501 * 109.47663 * 330.00467 * 22 20 18 26 26 C 1.38880 * 119.85962 * 359.69862 * 16 15 14 27 27 C 1.38095 * 119.93412 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47347 * 302.91800 * 1 2 3 29 29 H 1.09005 * 109.47165 * 62.91450 * 1 2 3 30 30 H 1.08996 * 109.46935 * 182.91077 * 1 2 3 31 31 H 1.09002 * 109.50260 * 300.74843 * 4 2 1 32 32 H 1.09000 * 109.49970 * 60.82101 * 4 2 1 33 33 H 1.08995 * 109.52523 * 177.56028 * 5 4 2 34 34 H 1.08996 * 109.52247 * 297.68641 * 5 4 2 35 35 H 1.09002 * 109.50191 * 62.28981 * 6 5 4 36 36 H 1.08996 * 109.50571 * 182.36370 * 6 5 4 37 37 H 1.08996 * 109.47419 * 64.75916 * 9 7 6 38 38 H 1.09006 * 109.47360 * 184.76434 * 9 7 6 39 39 H 0.96692 * 113.99846 * 179.97438 * 10 9 7 40 40 H 1.08995 * 109.46947 * 299.84018 * 12 11 7 41 41 H 1.09001 * 109.47030 * 179.83306 * 12 11 7 42 42 H 1.07999 * 119.96690 * 359.97438 * 14 13 12 43 43 H 1.07995 * 120.03751 * 180.26805 * 15 14 13 44 44 H 0.97000 * 120.00044 * 179.97438 * 21 20 18 45 45 H 1.08005 * 120.03290 * 180.02562 * 26 16 15 46 46 H 1.07996 * 119.96977 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 3.5710 -0.7361 -1.2354 6 6 4.0548 -1.4187 0.0470 7 6 3.4864 -0.6775 1.2592 8 1 3.8402 0.3534 1.2532 9 6 3.9510 -1.3682 2.5430 10 8 3.5838 -2.7486 2.5009 11 7 2.0193 -0.6916 1.1995 12 6 1.4372 -0.1103 2.4166 13 6 1.9044 1.3147 2.5657 14 6 3.0233 1.5979 3.3275 15 6 3.4573 2.9021 3.4614 16 6 2.7618 3.9311 2.8399 17 8 3.1821 5.2148 2.9750 18 6 2.3965 6.1749 2.4467 19 1 1.5225 5.9027 1.8736 20 6 2.7108 7.5115 2.6392 21 7 1.9445 8.4483 2.1234 22 14 4.2221 7.9821 3.6310 23 1 5.3935 8.0940 2.7251 24 1 3.9882 9.2866 4.3009 25 1 4.4864 6.9400 4.6554 26 6 1.6352 3.6440 2.0802 27 6 1.2096 2.3372 1.9454 28 1 -0.3634 0.5585 0.8627 29 1 -0.3634 0.4679 -0.9150 30 1 -0.3633 -1.0263 0.0522 31 1 1.6660 -1.7448 -1.2574 32 1 1.6889 -0.1987 -2.1398 33 1 3.9380 -1.2864 -2.1017 34 1 3.9457 0.2869 -1.2683 35 1 3.7126 -2.4535 0.0598 36 1 5.1439 -1.3952 0.0831 37 1 5.0342 -1.2829 2.6299 38 1 3.4789 -0.8927 3.4028 39 1 3.8478 -3.2499 3.2844 40 1 1.7549 -0.6894 3.2836 41 1 0.3497 -0.1305 2.3447 42 1 3.5607 0.7979 3.8149 43 1 4.3337 3.1222 4.0529 44 1 2.1642 9.3834 2.2584 45 1 1.0924 4.4420 1.5953 46 1 0.3334 2.1133 1.3552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272679529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:20 Heat of formation + Delta-G solvation = -47.716499 kcal Electronic energy + Delta-G solvation = -26233.705631 eV Core-core repulsion = 22702.942908 eV Total energy + Delta-G solvation = -3530.762722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30503 -38.87033 -36.76482 -36.42718 -33.72896 -32.73901 -32.39128 -30.30128 -29.57454 -27.82555 -26.16858 -25.72425 -24.65196 -22.15267 -21.82589 -20.91325 -20.44834 -19.22585 -17.99822 -17.31931 -17.29049 -15.99357 -15.77087 -15.02194 -14.89901 -14.54037 -14.29531 -14.09103 -14.04007 -13.78800 -13.45663 -13.26185 -13.07382 -12.67734 -12.53935 -12.45465 -12.22593 -12.09996 -11.79302 -11.49222 -11.38806 -11.31464 -11.13789 -10.85365 -10.83567 -10.73411 -10.55732 -10.25762 -10.18839 -10.05879 -9.76538 -9.41365 -8.91245 -8.32087 -8.06016 -7.36624 -6.46559 -4.13491 2.04743 2.12013 3.18525 3.21273 3.35628 3.98392 4.18917 4.29876 4.43316 4.75167 4.80336 4.83299 4.94206 5.03148 5.07130 5.26849 5.32177 5.37220 5.41000 5.42704 5.52776 5.58639 5.62854 5.65075 5.76255 5.84087 5.86824 5.97597 5.98659 5.99054 6.05093 6.09177 6.20853 6.24032 6.32604 6.33627 6.51195 6.53239 6.72009 6.95732 7.11880 7.22812 7.31407 7.36384 7.54981 7.63652 7.74309 7.98384 8.88445 9.50235 10.61001 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.003820 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.199037 B = 7328.957812 C = 7783.403371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.051 0.949 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.105 4.105 7 C 0.086 3.914 8 H 0.061 0.939 9 C 0.076 3.924 10 O -0.557 6.557 11 N -0.509 5.509 12 C 0.099 3.901 13 C -0.211 4.211 14 C -0.073 4.073 15 C -0.193 4.193 16 C 0.161 3.839 17 O -0.217 6.217 18 C -0.390 4.390 19 H 0.106 0.894 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.220 4.220 27 C -0.065 4.065 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.369 0.631 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.280 0.720 45 H 0.132 0.868 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -19.524 -1.714 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 H 0.069 0.931 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.143 4.143 7 C -0.022 4.022 8 H 0.078 0.922 9 C -0.002 4.002 10 O -0.360 6.360 11 N -0.232 5.232 12 C -0.028 4.028 13 C -0.214 4.214 14 C -0.091 4.091 15 C -0.212 4.212 16 C 0.108 3.892 17 O -0.122 6.122 18 C -0.466 4.466 19 H 0.123 0.877 20 C -0.139 4.139 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.184 1.184 26 C -0.240 4.240 27 C -0.084 4.084 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.214 0.786 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.704 -19.490 -2.269 19.695 hybrid contribution 1.029 1.326 0.931 1.919 sum 2.732 -18.164 -1.338 18.417 Atomic orbital electron populations 1.21991 0.94755 1.02210 1.01796 1.21619 0.95102 0.96438 0.90079 0.93130 1.21603 0.95323 1.01123 0.96660 1.21596 0.96092 1.00663 0.97728 1.21492 0.98992 1.00708 0.93131 1.21634 0.88659 0.97762 0.94174 0.92153 1.22447 0.97435 0.82465 0.97814 1.86597 1.83369 1.20902 1.45171 1.62383 1.06029 1.53161 1.01660 1.21093 0.99551 0.89469 0.92682 1.20080 0.99793 0.96138 1.05352 1.20600 0.95893 0.94940 0.97705 1.20202 1.03277 0.91416 1.06323 1.19135 0.92139 0.84988 0.92913 1.83572 1.46669 1.11795 1.70164 1.20765 1.08652 0.84633 1.32530 0.87652 1.24468 0.98516 0.94070 0.96884 1.69645 1.37656 1.00772 1.43524 0.86181 0.81894 0.78104 0.80729 1.19871 1.20740 1.18392 1.21289 1.00193 0.97170 1.05298 1.20813 0.98147 0.92005 0.97448 0.91984 0.92446 0.92018 0.91372 0.91966 0.92120 0.92335 0.90397 0.92321 0.93859 0.92764 0.78583 0.90665 0.90300 0.87142 0.86678 0.90999 0.85047 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.23 37.16 0.31 -1.42 16 2 C 0.08 0.97 1.80 -67.72 -0.12 0.85 16 3 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 4 C -0.11 -1.25 5.37 -26.65 -0.14 -1.40 16 5 C -0.12 -1.40 6.00 -26.61 -0.16 -1.55 16 6 C -0.11 -1.23 5.19 -26.65 -0.14 -1.37 16 7 C 0.09 1.09 1.61 -67.72 -0.11 0.98 16 8 H 0.06 0.89 6.63 -51.93 -0.34 0.55 16 9 C 0.08 0.83 5.79 37.16 0.22 1.05 16 10 O -0.56 -5.91 12.72 -35.23 -0.45 -6.36 16 11 N -0.51 -6.61 4.47 -220.18 -0.99 -7.60 16 12 C 0.10 1.32 4.85 -4.97 -0.02 1.30 16 13 C -0.21 -3.33 4.03 -104.57 -0.42 -3.76 16 14 C -0.07 -1.18 8.07 -39.61 -0.32 -1.50 16 15 C -0.19 -3.72 9.99 -39.39 -0.39 -4.12 16 16 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 17 O -0.22 -5.68 8.59 0.02 0.00 -5.68 16 18 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 19 H 0.11 3.02 5.44 -52.49 -0.29 2.73 16 20 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -25.21 13.96 55.48 0.77 -24.44 16 22 Si 0.91 21.53 28.62 -169.99 -4.86 16.67 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.22 -4.67 9.17 -39.40 -0.36 -5.03 16 27 C -0.07 -1.15 7.83 -39.61 -0.31 -1.46 16 28 H 0.06 0.74 4.39 -51.93 -0.23 0.51 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.98 7.54 -51.93 -0.39 0.59 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.59 3.87 -51.93 -0.20 0.39 16 39 H 0.37 2.29 9.12 45.56 0.42 2.70 16 40 H 0.08 0.95 6.04 -51.93 -0.31 0.64 16 41 H 0.08 1.02 5.98 -51.93 -0.31 0.71 16 42 H 0.11 1.48 5.68 -52.49 -0.30 1.18 16 43 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 44 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 2.96 5.64 -52.48 -0.30 2.66 16 46 H 0.11 1.74 5.51 -52.49 -0.29 1.45 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -29.82 343.40 -8.19 -38.01 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.81 Total: 7.19 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.03 Total: -22.96 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: -0.21 Total: -32.04 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.45 Total: -12.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.86 Total: 16.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.82 -8.19 -38.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272679529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.706 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds