Wall clock time and date at job start Tue Mar 31 2020 09:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99690 * 2 1 4 4 C 1.53005 * 109.47017 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46896 * 64.99796 * 4 3 2 6 6 C 1.34776 * 119.99996 * 265.65644 * 5 4 3 7 7 O 1.21283 * 119.99761 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.99983 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.46874 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.46874 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00358 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99627 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00316 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99726 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47290 * 59.99476 * 14 12 10 16 16 H 1.48502 * 109.47153 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47237 * 299.99563 * 14 12 10 18 18 C 1.46498 * 119.99800 * 85.93646 * 5 4 3 19 19 H 1.09002 * 109.47272 * 235.21226 * 18 5 4 20 20 C 1.53002 * 109.47234 * 355.21155 * 18 5 4 21 21 C 1.50705 * 109.47310 * 115.21247 * 18 5 4 22 22 C 1.38232 * 119.99614 * 322.69223 * 21 18 5 23 23 C 1.38241 * 119.99890 * 179.80902 * 22 21 18 24 24 C 1.38240 * 119.99619 * 0.39507 * 23 22 21 25 25 C 1.38234 * 120.00139 * 359.86321 * 24 23 22 26 26 C 1.38236 * 120.00159 * 359.94652 * 25 24 23 27 27 H 1.09003 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47529 * 299.99635 * 1 2 3 29 29 H 1.08999 * 109.47222 * 59.99912 * 1 2 3 30 30 H 1.08997 * 109.47352 * 60.00206 * 3 2 1 31 31 H 1.09005 * 109.47412 * 299.99943 * 3 2 1 32 32 H 1.09002 * 109.46770 * 305.00362 * 4 3 2 33 33 H 1.08996 * 109.47155 * 184.99946 * 4 3 2 34 34 H 1.08997 * 109.47361 * 299.99662 * 8 6 5 35 35 H 1.09002 * 109.46752 * 60.00137 * 8 6 5 36 36 H 1.08997 * 109.47127 * 300.00144 * 9 8 6 37 37 H 1.09002 * 109.47042 * 60.00654 * 9 8 6 38 38 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46890 * 180.02562 * 20 18 5 40 40 H 1.08995 * 109.47242 * 299.99962 * 20 18 5 41 41 H 1.09001 * 109.47360 * 60.00182 * 20 18 5 42 42 H 1.07995 * 120.00695 * 0.02562 * 22 21 18 43 43 H 1.07991 * 120.00405 * 180.23479 * 23 22 21 44 44 H 1.08000 * 119.99593 * 179.82972 * 24 23 22 45 45 H 1.08003 * 119.99890 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00284 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1791 -0.7666 -1.3103 7 8 4.5439 -1.2800 -2.3467 8 6 3.9533 -1.6170 -0.0868 9 6 4.2526 -3.0799 -0.4202 10 6 4.0262 -3.9303 0.8031 11 1 3.7017 -3.4731 1.7262 12 6 4.2343 -5.2921 0.7441 13 7 4.6298 -5.8488 -0.3798 14 14 3.9529 -6.3464 2.2603 15 1 2.5395 -6.2180 2.6973 16 1 4.2435 -7.7663 1.9367 17 1 4.8516 -5.8931 3.3521 18 6 4.2004 1.3919 -2.4406 19 1 3.6027 1.0097 -3.2681 20 6 3.7925 2.8358 -2.1410 21 6 5.6600 1.3493 -2.8136 22 6 6.6256 1.3249 -1.8247 23 6 7.9643 1.2818 -2.1668 24 6 8.3375 1.2714 -3.4978 25 6 7.3721 1.3012 -4.4866 26 6 6.0333 1.3403 -4.1446 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9784 2.1765 0.0889 34 1 4.6136 -1.2841 0.7140 35 1 2.9160 -1.5228 0.2347 36 1 3.5920 -3.4125 -1.2209 37 1 5.2897 -3.1744 -0.7419 38 1 4.7759 -6.8069 -0.4212 39 1 3.9594 3.4513 -3.0250 40 1 2.7369 2.8666 -1.8713 41 1 4.3903 3.2180 -1.3136 42 1 6.3341 1.3359 -0.7849 43 1 8.7186 1.2589 -1.3943 44 1 9.3835 1.2405 -3.7650 45 1 7.6637 1.2935 -5.5265 46 1 5.2789 1.3631 -4.9171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292238383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:00 Heat of formation + Delta-G solvation = -78.683470 kcal Electronic energy + Delta-G solvation = -25976.626441 eV Core-core repulsion = 22444.520890 eV Total energy + Delta-G solvation = -3532.105551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46435 -39.72003 -38.75792 -37.08132 -35.55075 -33.84978 -32.55926 -31.74680 -30.62781 -30.09440 -27.67637 -27.18724 -24.81567 -24.08614 -23.43900 -23.29895 -21.61565 -19.73027 -18.80970 -18.02305 -17.79149 -17.36921 -17.04454 -16.68030 -16.44743 -16.23507 -16.10372 -15.43428 -15.39667 -14.83141 -14.62711 -14.25404 -14.19174 -14.14410 -13.79123 -13.70924 -13.22230 -13.14732 -13.10023 -12.84653 -12.76158 -12.57921 -12.48084 -12.42280 -12.06003 -11.86622 -11.78494 -11.76141 -11.45833 -11.29556 -10.58056 -10.54541 -10.47158 -9.79641 -9.71494 -9.46896 -8.15967 -6.30170 0.46486 0.52858 1.40808 1.46394 1.54052 1.83672 2.08289 2.44149 2.91906 2.97103 3.16261 3.73932 3.84734 3.99614 4.12881 4.15370 4.21462 4.24446 4.27885 4.32865 4.44529 4.49970 4.55135 4.56596 4.62684 4.65759 4.68947 4.70411 4.84758 4.89387 4.96026 5.00486 5.13834 5.16376 5.20647 5.28344 5.50071 5.57365 5.58521 5.62787 5.68475 5.82215 5.88028 6.14821 6.21205 6.38869 6.48450 6.87590 7.38513 7.41980 8.96848 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.004737 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.035012 B = 5910.065328 C = 7671.152634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.416 6.416 3 C 0.038 3.962 4 C 0.095 3.905 5 N -0.600 5.600 6 C 0.521 3.479 7 O -0.584 6.584 8 C -0.115 4.115 9 C 0.050 3.950 10 C -0.539 4.539 11 H 0.072 0.928 12 C -0.006 4.006 13 N -0.939 5.939 14 Si 0.974 3.026 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.261 1.261 18 C 0.182 3.818 19 H 0.059 0.941 20 C -0.146 4.146 21 C -0.092 4.092 22 C -0.121 4.121 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.109 0.891 36 H -0.025 1.025 37 H -0.025 1.025 38 H 0.262 0.738 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 24.641 0.012 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.335 6.335 3 C -0.039 4.039 4 C -0.027 4.027 5 N -0.334 5.334 6 C 0.311 3.689 7 O -0.463 6.463 8 C -0.155 4.155 9 C 0.013 3.987 10 C -0.577 4.577 11 H 0.091 0.909 12 C -0.204 4.204 13 N -0.579 5.579 14 Si 0.798 3.202 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.186 1.186 18 C 0.079 3.921 19 H 0.077 0.923 20 C -0.202 4.202 21 C -0.093 4.093 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.145 4.145 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.107 0.893 35 H 0.127 0.873 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.246 24.073 -0.602 24.185 hybrid contribution -0.186 -1.105 0.096 1.124 sum -2.432 22.968 -0.507 23.102 Atomic orbital electron populations 1.22800 0.80213 1.02747 1.00832 1.87972 1.20924 1.29079 1.95565 1.23322 0.93509 0.84850 1.02250 1.22108 0.93438 1.01485 0.85636 1.48059 1.67384 1.05522 1.12401 1.21159 0.74818 0.82754 0.90129 1.90636 1.47845 1.73590 1.34246 1.21667 1.04261 0.94664 0.94891 1.18612 0.93799 0.91190 0.95142 1.21640 1.45535 0.93015 0.97540 0.90948 1.26149 0.94683 0.99869 0.99657 1.70190 1.47675 1.11539 1.28543 0.85373 0.79389 0.76811 0.78664 1.18658 1.21176 1.18570 1.19923 0.91346 0.93109 0.87758 0.92303 1.22167 1.02874 0.91191 1.04017 1.20279 0.95867 0.99238 0.93934 1.21059 0.93184 1.00369 0.99293 1.21421 0.96249 1.00114 0.97284 1.21436 1.00494 1.00360 0.92928 1.21399 0.92787 0.99936 1.00478 1.21175 0.97013 1.00603 0.95732 0.90848 0.92063 0.93527 0.89424 0.91892 0.89426 0.85020 0.89268 0.87270 1.00691 1.00652 0.92908 0.89923 0.89864 0.90017 0.86126 0.84711 0.84118 0.84181 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.42 -11.33 8.06 -148.98 -1.20 -12.53 16 3 C 0.04 0.68 6.08 71.98 0.44 1.12 16 4 C 0.10 1.91 5.13 86.38 0.44 2.35 16 5 N -0.60 -17.75 1.77 -801.99 -1.42 -19.17 16 6 C 0.52 22.30 6.96 87.66 0.61 22.91 16 7 O -0.58 -31.02 15.32 -3.04 -0.05 -31.07 16 8 C -0.12 -5.24 4.07 29.85 0.12 -5.11 16 9 C 0.05 3.02 4.26 29.85 0.13 3.15 16 10 C -0.54 -32.45 9.11 25.60 0.23 -32.22 16 11 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 12 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 13 N -0.94 -61.95 13.29 21.45 0.28 -61.67 16 14 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 C 0.18 4.74 2.82 44.25 0.12 4.86 16 19 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 20 C -0.15 -2.17 8.06 71.98 0.58 -1.59 16 21 C -0.09 -2.67 3.92 -19.86 -0.08 -2.75 16 22 C -0.12 -3.46 9.12 22.27 0.20 -3.25 16 23 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.13 16 25 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 26 C -0.13 -3.56 9.67 22.27 0.22 -3.34 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.99 6.02 -2.38 -0.01 0.98 16 32 H 0.09 1.93 6.28 -2.39 -0.01 1.91 16 33 H 0.13 1.59 6.01 -2.39 -0.01 1.57 16 34 H 0.09 3.64 7.41 -2.39 -0.02 3.62 16 35 H 0.11 4.73 5.71 -2.39 -0.01 4.72 16 36 H -0.03 -1.73 8.10 -2.39 -0.02 -1.75 16 37 H -0.02 -1.69 8.10 -2.39 -0.02 -1.71 16 38 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.99 5.69 -2.39 -0.01 0.98 16 41 H 0.08 0.98 6.70 -2.39 -0.02 0.97 16 42 H 0.12 3.19 7.63 -2.91 -0.02 3.17 16 43 H 0.14 2.99 8.06 -2.92 -0.02 2.97 16 44 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 45 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 46 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -85.61 369.79 6.00 -79.61 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.95 Total: 18.41 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 5.40 Total: -21.43 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -1.14 Total: -80.84 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.25 Total: -43.60 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -85.61 6.00 -79.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292238383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.931 kcal (2) G-P(sol) polarization free energy of solvation -85.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds