Wall clock time and date at job start Tue Mar 31 2020 09:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 N 1.46904 * 109.47346 * 239.99658 * 2 1 3 5 5 C 1.46898 * 110.99913 * 85.00315 * 4 2 1 6 6 C 1.53000 * 109.47319 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47399 * 175.87986 * 6 5 4 8 8 C 1.52996 * 115.54857 * 301.52065 * 7 6 5 9 9 O 1.42901 * 109.46956 * 302.17120 * 8 7 6 10 10 C 1.52996 * 117.49793 * 155.84598 * 7 6 5 11 11 C 1.53002 * 117.49720 * 87.18822 * 7 6 5 12 12 C 1.50697 * 109.46770 * 119.99626 * 2 1 3 13 13 C 1.38308 * 119.92983 * 79.73235 * 12 2 1 14 14 C 1.38098 * 120.06577 * 179.72384 * 13 12 2 15 15 C 1.38879 * 119.93330 * 0.54623 * 14 13 12 16 16 O 1.35749 * 120.06937 * 179.74908 * 15 14 13 17 17 C 1.34834 * 116.99915 * 174.00932 * 16 15 14 18 18 H 1.07993 * 119.99774 * 354.64422 * 17 16 15 19 19 C 1.38655 * 120.00077 * 174.64827 * 17 16 15 20 20 N 1.31561 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00209 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47200 * 90.00009 * 21 19 17 23 23 H 1.48495 * 109.47301 * 210.00092 * 21 19 17 24 24 H 1.48502 * 109.47255 * 330.00537 * 21 19 17 25 25 C 1.38878 * 119.86295 * 359.72186 * 15 14 13 26 26 C 1.38102 * 119.92643 * 0.02562 * 25 15 14 27 27 H 1.09004 * 109.46899 * 60.00032 * 1 2 3 28 28 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47567 * 300.00404 * 1 2 3 30 30 H 1.00899 * 110.99821 * 208.95250 * 4 2 1 31 31 H 1.09002 * 109.47113 * 60.00147 * 5 4 2 32 32 H 1.08997 * 109.47009 * 299.99944 * 5 4 2 33 33 H 1.08994 * 109.46687 * 295.88405 * 6 5 4 34 34 H 1.08998 * 109.46594 * 55.87811 * 6 5 4 35 35 H 1.08995 * 109.47578 * 62.17298 * 8 7 6 36 36 H 1.09008 * 109.46844 * 182.17599 * 8 7 6 37 37 H 0.96698 * 113.99852 * 180.02562 * 9 8 7 38 38 H 1.09003 * 117.49892 * 0.02562 * 10 7 6 39 39 H 1.09000 * 117.49586 * 145.02222 * 10 7 6 40 40 H 1.08999 * 117.49712 * 214.98429 * 11 7 6 41 41 H 1.09000 * 117.49914 * 359.97438 * 11 7 6 42 42 H 1.07991 * 119.96460 * 359.97438 * 13 12 2 43 43 H 1.08002 * 120.03362 * 180.27029 * 14 13 12 44 44 H 0.96994 * 120.00239 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.03604 * 179.97438 * 25 15 14 46 46 H 1.08004 * 119.96223 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5964 -0.5330 -3.5741 7 6 2.5648 0.3918 -4.7925 8 6 1.1930 0.9685 -5.1479 9 8 0.2729 -0.1000 -5.3802 10 6 3.5176 0.0729 -5.9463 11 6 3.7886 1.2763 -5.0399 12 6 2.0322 -0.7103 1.2305 13 6 2.0607 -2.0927 1.2660 14 6 2.5258 -2.7464 2.3900 15 6 2.9544 -2.0146 3.4898 16 8 3.4073 -2.6545 4.5980 17 6 3.9232 -1.8876 5.5797 18 1 4.0418 -0.8249 5.4288 19 6 4.3016 -2.4635 6.7829 20 7 4.1576 -3.7583 6.9665 21 14 5.0170 -1.4013 8.1427 22 1 3.9200 -0.9036 9.0111 23 1 5.9638 -2.2075 8.9544 24 1 5.7359 -0.2482 7.5437 25 6 2.9193 -0.6267 3.4532 26 6 2.4580 0.0212 2.3242 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.9173 -1.1205 -1.0286 31 1 2.7590 1.0461 -2.1182 32 1 1.0872 0.6162 -2.5526 33 1 3.6195 -0.8635 -3.3952 34 1 1.9617 -1.3996 -3.7592 35 1 0.8334 1.5849 -4.3240 36 1 1.2770 1.5778 -6.0478 37 1 -0.6193 0.1926 -5.6114 38 1 4.1666 -0.7961 -5.8376 39 1 3.1672 0.2743 -6.9586 40 1 3.6163 2.2688 -5.4562 41 1 4.6159 1.1996 -4.3345 42 1 1.7228 -2.6612 0.4123 43 1 2.5519 -3.8258 2.4155 44 1 4.4219 -4.1611 7.8084 45 1 3.2515 -0.0549 4.3069 46 1 2.4309 1.1005 2.2949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395876435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:13 Heat of formation + Delta-G solvation = -57.813170 kcal Electronic energy + Delta-G solvation = -24172.199720 eV Core-core repulsion = 20640.999174 eV Total energy + Delta-G solvation = -3531.200547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88886 -39.84935 -38.94328 -36.96321 -36.54208 -34.31863 -33.00286 -31.80269 -29.71030 -29.15417 -27.44362 -27.35134 -24.41121 -23.79869 -23.35520 -22.66923 -21.36150 -19.87379 -19.72533 -18.81442 -18.18117 -17.11586 -16.77769 -16.65209 -16.31459 -16.08078 -15.69246 -15.50180 -15.37248 -15.05078 -14.47189 -14.43875 -14.28435 -14.08270 -13.85518 -13.65450 -13.52131 -13.23335 -13.01184 -12.74931 -12.71087 -12.40781 -12.38860 -12.24773 -12.13732 -12.00624 -11.84865 -11.47731 -11.23316 -11.19931 -10.93789 -10.78700 -10.48814 -9.77505 -9.31518 -8.91366 -8.47405 -6.15520 0.60110 0.68300 1.34588 1.43983 1.52207 2.17516 2.70547 2.81301 3.14095 3.25575 3.47060 3.51555 3.77190 3.90369 3.93159 4.07353 4.15485 4.23898 4.27350 4.38001 4.40915 4.47525 4.56912 4.61194 4.66771 4.73035 4.75969 4.77042 4.81105 4.94908 4.99034 5.02613 5.11387 5.13018 5.18524 5.24507 5.26670 5.29664 5.38445 5.45328 5.57921 5.71508 5.73906 6.02540 6.20073 6.26620 6.49347 6.96864 6.97252 7.78703 8.75990 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.002280 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.042238 B =12278.648353 C =12482.814338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.147 3.853 3 H 0.053 0.947 4 N -0.689 5.689 5 C 0.070 3.930 6 C -0.069 4.069 7 C -0.137 4.137 8 C 0.114 3.886 9 O -0.587 6.587 10 C -0.173 4.173 11 C -0.160 4.160 12 C -0.164 4.164 13 C -0.046 4.046 14 C -0.205 4.205 15 C 0.114 3.886 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.241 4.241 26 C -0.063 4.063 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.341 0.659 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.394 0.606 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.144 0.856 43 H 0.111 0.889 44 H 0.273 0.727 45 H 0.119 0.881 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 14.055 -24.122 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.038 3.962 3 H 0.071 0.929 4 N -0.320 5.320 5 C -0.058 4.058 6 C -0.106 4.106 7 C -0.138 4.138 8 C 0.036 3.964 9 O -0.395 6.395 10 C -0.210 4.210 11 C -0.197 4.197 12 C -0.165 4.165 13 C -0.064 4.064 14 C -0.225 4.225 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.261 4.261 26 C -0.082 4.082 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.161 0.839 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.075 13.069 -23.953 27.754 hybrid contribution 0.684 0.703 1.133 1.499 sum -4.391 13.772 -22.820 27.012 Atomic orbital electron populations 1.21737 0.93574 1.02010 1.01365 1.20148 0.95801 0.94573 0.85699 0.92870 1.60602 1.33531 1.33536 1.04367 1.21908 1.00661 0.93501 0.89772 1.20876 1.00625 0.97455 0.91688 1.21418 0.91397 1.03056 0.97880 1.21632 0.87281 0.88141 0.99320 1.86481 1.24847 1.35319 1.92899 1.23075 1.02410 0.99927 0.95550 1.23109 0.97844 0.95953 1.02804 1.19752 1.06474 0.93472 0.96846 1.20751 0.95633 0.94191 0.95820 1.20474 1.09032 0.99507 0.93453 1.19956 0.93118 0.92477 0.88087 1.83956 1.69530 1.36460 1.24004 1.21797 1.40880 0.92986 0.93188 0.88193 1.26607 0.97578 0.97891 1.00090 1.70187 1.47114 1.12118 1.26504 0.84579 0.78195 0.77265 0.76124 1.18776 1.19589 1.17664 1.21219 1.10237 0.93461 1.01147 1.20936 0.95683 0.99934 0.91615 0.91707 0.92988 0.92540 0.84067 0.95215 0.90846 0.92384 0.91902 0.92588 0.92497 0.75616 0.89010 0.88154 0.87358 0.88410 0.83879 0.87110 0.91840 0.86366 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.39 71.98 0.68 -2.21 16 2 C 0.15 3.53 2.81 44.17 0.12 3.65 16 3 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 4 N -0.69 -15.46 5.70 -495.46 -2.82 -18.28 16 5 C 0.07 1.31 5.30 86.30 0.46 1.76 16 6 C -0.07 -1.26 5.22 30.59 0.16 -1.10 16 7 C -0.14 -2.07 1.89 -52.18 -0.10 -2.17 16 8 C 0.11 1.46 6.45 71.98 0.46 1.93 16 9 O -0.59 -9.01 13.40 -148.98 -2.00 -11.01 16 10 C -0.17 -2.40 9.95 30.62 0.30 -2.10 16 11 C -0.16 -1.96 9.96 30.62 0.30 -1.66 16 12 C -0.16 -5.15 4.71 -19.83 -0.09 -5.24 16 13 C -0.05 -1.58 9.00 22.25 0.20 -1.38 16 14 C -0.21 -8.95 9.99 22.39 0.22 -8.73 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.22 9.76 -22.77 -0.22 -14.44 16 17 C -0.41 -24.25 9.44 67.92 0.64 -23.61 16 18 H 0.10 5.39 5.30 -2.91 -0.02 5.38 16 19 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 20 N -0.92 -57.12 13.67 21.61 0.30 -56.82 16 21 Si 1.02 43.12 29.55 68.60 2.03 45.14 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 25 C -0.24 -10.58 9.13 22.39 0.20 -10.37 16 26 C -0.06 -2.18 9.66 22.25 0.21 -1.96 16 27 H 0.06 1.23 7.45 -2.38 -0.02 1.21 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.34 8.07 7.99 -89.69 -0.72 7.35 16 31 H 0.03 0.54 8.06 -2.39 -0.02 0.52 16 32 H 0.07 1.34 6.06 -2.39 -0.01 1.32 16 33 H 0.06 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.06 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.06 0.64 7.02 -2.39 -0.02 0.63 16 36 H 0.06 0.56 8.11 -2.38 -0.02 0.54 16 37 H 0.39 2.52 9.12 -74.06 -0.68 1.85 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.14 4.31 7.72 -2.92 -0.02 4.29 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.12 5.27 5.72 -2.91 -0.02 5.25 16 46 H 0.14 3.82 8.03 -2.91 -0.02 3.80 16 Total: -1.00 -71.85 378.09 1.28 -70.58 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.40 Total: 33.05 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 4.40 Total: -48.21 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -2.53 Total: -75.10 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -2.22 Total: -25.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.85 1.28 -70.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395876435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.763 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds