Wall clock time and date at job start Tue Mar 31 2020 08:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46679 * 2 1 4 4 O 1.42900 * 109.46803 * 119.99596 * 2 1 3 5 5 C 1.35906 * 116.99897 * 155.47485 * 4 2 1 6 6 C 1.38754 * 120.05390 * 4.43369 * 5 4 2 7 7 C 1.38123 * 119.94481 * 180.27763 * 6 5 4 8 8 C 1.38290 * 120.05136 * 359.72028 * 7 6 5 9 9 C 1.38246 * 120.11553 * 0.02562 * 8 7 6 10 10 C 1.38169 * 120.05133 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.02497 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47151 * 103.32019 * 11 10 9 13 13 C 1.47437 * 111.00080 * 284.32844 * 12 11 10 14 14 C 1.54321 * 107.23251 * 236.73929 * 13 12 11 15 15 C 1.55141 * 103.01925 * 337.71514 * 14 13 12 16 16 O 1.42894 * 110.99352 * 277.55980 * 15 14 13 17 17 C 1.50705 * 110.98901 * 153.74289 * 15 14 13 18 18 H 1.07999 * 119.99983 * 241.45437 * 17 15 14 19 19 C 1.37870 * 119.99848 * 61.45661 * 17 15 14 20 20 N 1.31519 * 120.00184 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99914 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47186 * 60.00054 * 21 19 17 23 23 H 1.48506 * 109.47163 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47074 * 299.99597 * 21 19 17 25 25 C 1.47850 * 111.00034 * 163.48211 * 12 11 10 26 26 H 1.08991 * 109.47992 * 299.99959 * 1 2 3 27 27 H 1.09001 * 109.46985 * 60.00537 * 1 2 3 28 28 H 1.09006 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47294 * 239.99774 * 2 1 3 30 30 H 1.08994 * 109.47168 * 299.99837 * 3 2 1 31 31 H 1.09000 * 109.47341 * 60.00040 * 3 2 1 32 32 H 1.08997 * 109.46847 * 179.97438 * 3 2 1 33 33 H 1.08000 * 120.03010 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.97673 * 179.74371 * 7 6 5 35 35 H 1.08003 * 119.94273 * 180.02562 * 8 7 6 36 36 H 1.07998 * 119.97229 * 180.02562 * 9 8 7 37 37 H 1.08997 * 109.47261 * 343.32004 * 11 10 9 38 38 H 1.09005 * 109.47171 * 223.32127 * 11 10 9 39 39 H 1.09005 * 109.88858 * 117.33552 * 13 12 11 40 40 H 1.08998 * 109.89077 * 356.14641 * 13 12 11 41 41 H 1.09003 * 110.70426 * 96.09983 * 14 13 12 42 42 H 1.09005 * 110.70560 * 219.33358 * 14 13 12 43 43 H 0.96704 * 114.00190 * 298.55126 * 16 15 14 44 44 H 0.97003 * 119.99964 * 179.97438 * 20 19 17 45 45 H 1.09005 * 110.37171 * 265.19489 * 25 12 11 46 46 H 1.08996 * 110.37195 * 27.42840 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2506 -1.2162 1.1013 6 6 4.0339 -1.0241 -0.0278 7 6 5.2959 -1.5814 -0.0943 8 6 5.7812 -2.3253 0.9656 9 6 5.0048 -2.5137 2.0939 10 6 3.7417 -1.9583 2.1652 11 6 2.8957 -2.1645 3.3952 12 7 2.9091 -0.9419 4.2093 13 6 4.1859 -0.8031 4.9333 14 6 3.8504 -0.6964 6.4358 15 6 2.3772 -0.2099 6.4312 16 8 2.3064 1.2066 6.2575 17 6 1.6649 -0.6337 7.6899 18 1 0.8065 -1.2864 7.6309 19 6 2.1092 -0.1881 8.9166 20 7 3.1549 0.6063 8.9885 21 14 1.2259 -0.7128 10.4767 22 1 1.2680 -2.1924 10.5957 23 1 1.8953 -0.1028 11.6536 24 1 -0.1876 -0.2606 10.4212 25 6 1.8073 -0.9498 5.1953 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 3.6555 -0.4428 -0.8556 34 1 5.9044 -1.4357 -0.9746 35 1 6.7685 -2.7599 0.9119 36 1 5.3863 -3.0948 2.9205 37 1 3.2975 -2.9934 3.9778 38 1 1.8719 -2.3920 3.0980 39 1 4.7029 0.0983 4.6038 40 1 4.8108 -1.6780 4.7541 41 1 3.9334 -1.6698 6.9193 42 1 4.4959 0.0339 6.9239 43 1 2.7375 1.7112 6.9609 44 1 3.4672 0.9201 9.8516 45 1 0.9413 -0.4182 4.8008 46 1 1.5376 -1.9735 5.4547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:23 Heat of formation + Delta-G solvation = -79.330449 kcal Electronic energy + Delta-G solvation = -26023.085475 eV Core-core repulsion = 22490.951869 eV Total energy + Delta-G solvation = -3532.133606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32666 -39.99510 -38.53610 -36.55550 -34.19165 -34.16181 -33.01245 -31.03343 -30.22836 -29.84718 -28.12965 -27.08443 -25.58329 -24.21980 -22.64633 -21.58806 -21.40633 -21.37710 -19.08887 -18.85670 -17.18001 -16.88948 -16.72822 -16.72134 -16.35913 -16.03592 -15.75388 -15.54427 -14.94754 -14.73568 -14.43066 -14.12491 -13.88534 -13.79341 -13.57647 -13.36303 -13.18462 -13.14667 -13.08452 -12.85082 -12.83734 -12.67301 -12.58177 -12.27844 -12.19640 -12.12209 -12.00258 -11.64371 -11.58533 -11.39071 -11.07554 -10.60170 -10.09422 -9.75269 -9.09594 -8.94975 -8.21044 -6.37570 0.42952 0.61311 1.40876 1.42128 1.49888 2.38068 2.41599 2.81989 3.03162 3.36171 3.79832 3.88294 3.91465 4.00542 4.06124 4.11069 4.16757 4.21824 4.28376 4.40162 4.43808 4.47413 4.61538 4.67233 4.71420 4.74900 4.77475 4.84491 4.89491 4.91204 5.00330 5.07347 5.14107 5.25025 5.27589 5.29969 5.48037 5.50566 5.54181 5.57517 5.65935 5.80009 5.99018 6.01209 6.24973 6.34075 6.67526 6.68980 7.33986 7.45723 8.84081 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.003915 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.878491 B = 7150.732310 C = 7985.868012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.174 4.174 4 O -0.319 6.319 5 C 0.137 3.863 6 C -0.220 4.220 7 C -0.082 4.082 8 C -0.164 4.164 9 C -0.085 4.085 10 C -0.129 4.129 11 C 0.103 3.897 12 N -0.519 5.519 13 C 0.059 3.941 14 C -0.133 4.133 15 C 0.237 3.763 16 O -0.589 6.589 17 C -0.564 4.564 18 H 0.053 0.947 19 C 0.032 3.968 20 N -0.911 5.911 21 Si 0.960 3.040 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.275 1.275 25 C 0.071 3.929 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.371 0.629 44 H 0.269 0.731 45 H 0.056 0.944 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -4.434 -19.783 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 C -0.232 4.232 4 O -0.233 6.233 5 C 0.091 3.909 6 C -0.238 4.238 7 C -0.100 4.100 8 C -0.182 4.182 9 C -0.104 4.104 10 C -0.130 4.130 11 C -0.025 4.025 12 N -0.243 5.243 13 C -0.069 4.069 14 C -0.172 4.172 15 C 0.197 3.803 16 O -0.396 6.396 17 C -0.602 4.602 18 H 0.072 0.928 19 C -0.169 4.169 20 N -0.550 5.550 21 Si 0.785 3.215 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.200 1.200 25 C -0.056 4.056 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.219 0.781 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.348 -4.098 -20.395 20.934 hybrid contribution 0.007 -0.468 2.196 2.245 sum 2.355 -4.565 -18.198 18.910 Atomic orbital electron populations 1.21859 0.91820 1.03064 1.03491 1.22668 0.96098 0.92796 0.87114 1.22334 1.01598 0.95972 1.03258 1.86253 1.28947 1.68172 1.39906 1.19000 0.85154 0.92572 0.94149 1.21488 0.96895 1.06872 0.98584 1.21273 0.94568 0.95051 0.99153 1.21286 1.01106 1.02004 0.93802 1.21100 0.92090 0.98394 0.98809 1.19245 0.96615 1.02292 0.94826 1.20949 0.99118 0.90519 0.91911 1.63501 1.02492 1.36150 1.22172 1.22682 0.91425 1.00022 0.92737 1.23046 0.99862 0.99986 0.94316 1.19755 0.90918 0.78659 0.90985 1.86149 1.81438 1.20152 1.51840 1.21788 1.14967 1.31086 0.92385 0.92826 1.25688 0.95110 0.94229 1.01847 1.69832 1.24736 1.33946 1.26452 0.85593 0.78712 0.78646 0.78533 1.19614 1.20461 1.20010 1.22780 0.94014 0.97820 0.91033 0.93041 0.87995 0.91947 0.89537 0.88595 0.93429 0.92622 0.83764 0.83093 0.83662 0.85104 0.93885 0.91098 0.92871 0.92340 0.93617 0.92529 0.78135 0.92200 0.92602 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.56 71.98 0.69 -2.10 16 2 C 0.07 1.52 2.85 30.60 0.09 1.61 16 3 C -0.17 -3.68 9.17 71.98 0.66 -3.02 16 4 O -0.32 -9.91 9.10 -92.50 -0.84 -10.75 16 5 C 0.14 4.08 6.57 22.50 0.15 4.23 16 6 C -0.22 -5.12 8.24 22.37 0.18 -4.94 16 7 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 8 C -0.16 -3.49 10.04 22.28 0.22 -3.27 16 9 C -0.09 -2.23 9.23 22.26 0.21 -2.02 16 10 C -0.13 -4.00 5.08 -19.77 -0.10 -4.10 16 11 C 0.10 3.59 4.36 85.56 0.37 3.97 16 12 N -0.52 -21.72 5.11 -890.10 -4.54 -26.26 16 13 C 0.06 2.47 6.52 86.65 0.57 3.03 16 14 C -0.13 -6.45 5.37 31.78 0.17 -6.28 16 15 C 0.24 12.43 0.87 -10.15 -0.01 12.42 16 16 O -0.59 -32.92 13.16 -148.98 -1.96 -34.88 16 17 C -0.56 -31.43 8.27 25.60 0.21 -31.22 16 18 H 0.05 2.97 7.79 -2.91 -0.02 2.94 16 19 C 0.03 1.74 5.29 84.65 0.45 2.18 16 20 N -0.91 -49.96 10.75 21.45 0.23 -49.73 16 21 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C 0.07 3.33 5.81 86.77 0.50 3.83 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.09 1.54 6.29 -2.39 -0.02 1.52 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.23 6.93 -2.39 -0.02 1.21 16 33 H 0.14 2.67 5.45 -2.91 -0.02 2.66 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.13 3.09 7.97 -2.91 -0.02 3.07 16 37 H 0.04 1.43 7.60 -2.39 -0.02 1.41 16 38 H 0.07 2.51 7.80 -2.38 -0.02 2.49 16 39 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.06 2.14 6.90 -2.39 -0.02 2.13 16 41 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 42 H 0.06 2.93 7.54 -2.38 -0.02 2.91 16 43 H 0.37 20.84 7.57 -74.05 -0.56 20.28 16 44 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.05 2.18 7.70 -2.39 -0.02 2.16 16 Total: -1.00 -63.99 365.21 -0.10 -64.09 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.41 Total: 39.66 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.58 Total: -27.11 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -4.31 Total: -75.99 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -2.80 Total: -45.62 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.99 -0.10 -64.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.239 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds