Wall clock time and date at job start Tue Mar 31 2020 08:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 O 1.42902 * 109.47296 * 180.02562 * 3 2 1 5 5 C 1.35898 * 117.00254 * 179.97438 * 4 3 2 6 6 C 1.38753 * 120.05357 * 359.97438 * 5 4 3 7 7 C 1.38123 * 119.94329 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.05386 * 0.02562 * 7 6 5 9 9 C 1.38244 * 120.11305 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.96896 * 180.28413 * 9 8 7 11 11 N 1.46903 * 109.46981 * 269.72402 * 10 9 8 12 12 C 1.47851 * 111.00180 * 290.84827 * 11 10 9 13 13 C 1.54903 * 104.79424 * 213.63936 * 12 11 10 14 14 C 1.55143 * 101.65723 * 37.06591 * 13 12 11 15 15 O 1.42899 * 110.70258 * 82.73040 * 14 13 12 16 16 C 1.50703 * 110.85512 * 205.89550 * 14 13 12 17 17 H 1.07997 * 119.99775 * 113.68727 * 16 14 13 18 18 C 1.37877 * 120.00092 * 293.68520 * 16 14 13 19 19 N 1.31515 * 120.00002 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00003 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47206 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46846 * 119.99958 * 20 18 16 23 23 H 1.48501 * 109.47169 * 239.99676 * 20 18 16 24 24 C 1.47441 * 111.00123 * 170.00178 * 11 10 9 25 25 C 1.38165 * 120.05319 * 0.02562 * 9 8 7 26 26 H 1.08997 * 109.47464 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47160 * 300.00192 * 1 2 3 29 29 H 1.09001 * 109.47160 * 239.99808 * 2 1 3 30 30 H 1.08992 * 109.47059 * 119.99818 * 2 1 3 31 31 H 1.09001 * 109.47266 * 59.99873 * 3 2 1 32 32 H 1.09005 * 109.46832 * 300.00040 * 3 2 1 33 33 H 1.08001 * 120.02917 * 359.97438 * 6 5 4 34 34 H 1.08001 * 119.96995 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.93990 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.47472 * 29.72221 * 10 9 8 37 37 H 1.08997 * 109.46933 * 149.72643 * 10 9 8 38 38 H 1.08996 * 110.36859 * 332.46381 * 12 11 10 39 39 H 1.08993 * 110.37741 * 94.80465 * 12 11 10 40 40 H 1.09003 * 110.98751 * 278.97264 * 13 12 11 41 41 H 1.09001 * 111.02295 * 155.17802 * 13 12 11 42 42 H 0.96701 * 113.99905 * 66.40418 * 15 14 13 43 43 H 0.97001 * 120.00274 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.88934 * 242.66782 * 24 11 10 45 45 H 1.09000 * 109.89047 * 3.85358 * 24 11 10 46 46 H 1.08000 * 120.02351 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0012 6 6 3.3314 3.8178 -0.0018 7 6 3.9608 5.0472 -0.0030 8 6 5.3419 5.1182 -0.0041 9 6 6.0960 3.9596 -0.0035 10 6 7.6008 4.0407 0.0017 11 7 8.0947 4.0628 -1.3816 12 6 7.8805 2.7573 -2.0417 13 6 9.0865 2.5961 -3.0003 14 6 10.2352 3.2232 -2.1671 15 8 10.7636 2.2731 -1.2398 16 6 11.3241 3.7502 -3.0660 17 1 11.5154 4.8118 -3.1171 18 6 12.0760 2.8769 -3.8229 19 7 11.8427 1.5841 -3.7610 20 14 13.4261 3.5300 -4.9365 21 1 13.4869 5.0096 -4.8254 22 1 14.7299 2.9494 -4.5265 23 1 13.1353 3.1502 -6.3423 24 6 9.5341 4.3796 -1.4237 25 6 5.4711 2.7273 -0.0024 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 2.2528 3.7628 -0.0022 34 1 3.3739 5.9538 -0.0030 35 1 5.8322 6.0806 -0.0046 36 1 7.9138 4.9505 0.5138 37 1 8.0096 3.1732 0.5197 38 1 7.8729 1.9556 -1.3033 39 1 6.9470 2.7651 -2.6042 40 1 8.9271 3.1507 -3.9250 41 1 9.2836 1.5442 -3.2074 42 1 11.2147 1.5259 -1.6563 43 1 12.3719 0.9697 -4.2933 44 1 9.6923 5.3152 -1.9600 45 1 9.9259 4.4600 -0.4098 46 1 6.0606 1.8224 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:26 Heat of formation + Delta-G solvation = -69.148088 kcal Electronic energy + Delta-G solvation = -24973.680373 eV Core-core repulsion = 21441.988307 eV Total energy + Delta-G solvation = -3531.692066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18716 -38.60471 -37.42953 -34.75927 -34.13619 -32.05381 -31.79274 -30.17340 -28.96318 -28.02966 -26.79661 -25.41915 -23.95413 -22.46642 -22.08178 -20.83246 -20.01575 -19.41283 -17.69879 -17.09030 -16.45506 -16.15218 -15.86409 -15.16818 -14.89837 -14.73251 -14.37369 -14.18470 -13.95913 -13.70234 -13.31815 -13.15537 -12.64198 -12.57490 -12.43271 -12.24114 -11.88688 -11.69874 -11.51885 -11.46565 -11.40226 -11.24522 -11.00821 -10.89615 -10.78922 -10.69188 -10.46340 -10.40195 -10.24631 -9.86016 -9.25347 -8.76296 -8.58905 -8.10136 -8.06096 -7.61281 -6.19526 -4.26329 1.41196 1.56989 3.08659 3.23003 3.31590 3.36079 3.83741 4.32314 4.56097 4.57073 4.80021 4.85916 4.89645 4.95169 5.05398 5.07884 5.09245 5.20186 5.31180 5.44907 5.52153 5.59896 5.62928 5.73346 5.74181 5.76752 5.86878 6.03026 6.09953 6.17831 6.22606 6.33859 6.37477 6.46087 6.51493 6.59524 6.79698 6.86840 6.97686 7.11294 7.45040 7.45514 7.51286 7.69603 7.78782 7.85510 8.16490 8.75335 9.41555 9.54538 10.87794 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002867 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.694543 B = 9764.691422 C =10527.054579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.317 6.317 5 C 0.126 3.874 6 C -0.216 4.216 7 C -0.085 4.085 8 C -0.138 4.138 9 C -0.024 4.024 10 C 0.086 3.914 11 N -0.524 5.524 12 C 0.044 3.956 13 C -0.132 4.132 14 C 0.236 3.764 15 O -0.593 6.593 16 C -0.529 4.529 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.057 3.943 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.384 0.616 43 H 0.266 0.734 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.503 0.666 7.681 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.015 4.015 4 O -0.231 6.231 5 C 0.081 3.919 6 C -0.235 4.235 7 C -0.103 4.103 8 C -0.157 4.157 9 C -0.025 4.025 10 C -0.042 4.042 11 N -0.248 5.248 12 C -0.083 4.083 13 C -0.170 4.170 14 C 0.195 3.805 15 O -0.403 6.403 16 C -0.568 4.568 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.070 4.070 25 C -0.162 4.162 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.235 0.765 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.887 1.112 7.787 21.386 hybrid contribution 1.151 -0.603 -0.724 1.488 sum -18.736 0.508 7.063 20.029 Atomic orbital electron populations 1.21687 0.94361 1.02472 1.02127 1.21488 0.95905 0.95014 1.03837 1.22821 0.78896 0.98608 1.01213 1.86056 1.20912 1.27276 1.88873 1.18909 0.92131 0.83894 0.96937 1.21128 0.99516 0.92546 1.10322 1.20873 0.94616 0.96712 0.98073 1.20939 0.93351 0.98242 1.03130 1.19679 0.95719 0.91948 0.95133 1.21246 0.89777 1.01523 0.91668 1.63723 1.17342 1.30383 1.13304 1.23073 0.99267 0.88994 0.96986 1.23172 0.94240 1.01903 0.97725 1.19721 0.90204 0.85068 0.85458 1.86066 1.77027 1.38974 1.38230 1.21648 1.17166 0.93981 1.23994 0.91878 1.25019 0.97145 0.94875 0.96285 1.69602 1.40752 1.01736 1.41892 0.86399 0.81411 0.79235 0.80115 1.19642 1.20910 1.20905 1.22861 0.84915 0.99434 0.99771 1.20373 0.91152 0.98498 1.06169 0.92382 0.91758 0.92447 0.90718 0.90834 0.92268 0.92178 0.86064 0.86097 0.85829 0.90311 0.93597 0.94449 0.92206 0.91875 0.90937 0.76471 0.92366 0.90132 0.93438 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.98 6.30 -26.73 -0.17 -1.15 16 3 C 0.06 0.57 4.74 37.16 0.18 0.74 16 4 O -0.32 -4.24 10.14 -19.42 -0.20 -4.44 16 5 C 0.13 1.79 6.69 -39.22 -0.26 1.52 16 6 C -0.22 -2.65 9.04 -39.43 -0.36 -3.01 16 7 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 8 C -0.14 -1.88 9.70 -39.56 -0.38 -2.27 16 9 C -0.02 -0.37 5.09 -104.65 -0.53 -0.91 16 10 C 0.09 1.45 4.72 -4.98 -0.02 1.43 16 11 N -0.52 -10.34 5.15 -232.70 -1.20 -11.54 16 12 C 0.04 0.91 5.60 -2.30 -0.01 0.90 16 13 C -0.13 -3.12 5.67 -24.59 -0.14 -3.26 16 14 C 0.24 5.91 0.85 -89.95 -0.08 5.84 16 15 O -0.59 -15.60 13.08 -35.23 -0.46 -16.07 16 16 C -0.53 -14.27 8.22 -34.44 -0.28 -14.55 16 17 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 18 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 19 N -0.90 -24.22 10.69 55.43 0.59 -23.63 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.06 1.26 6.21 -2.84 -0.02 1.24 16 25 C -0.14 -2.21 8.86 -39.44 -0.35 -2.56 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 33 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 37 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 38 H 0.04 0.77 6.98 -51.93 -0.36 0.41 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.54 8.05 -51.93 -0.42 1.12 16 41 H 0.07 1.81 7.76 -51.93 -0.40 1.41 16 42 H 0.38 10.33 6.98 45.56 0.32 10.65 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.08 1.76 7.63 -51.93 -0.40 1.36 16 45 H 0.05 1.02 7.47 -51.93 -0.39 0.64 16 46 H 0.13 2.03 7.47 -52.49 -0.39 1.63 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -28.52 367.41 -10.20 -38.72 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.90 Total: 11.83 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.55 Total: -16.21 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.61 Total: -35.16 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.66 Total: -20.50 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.52 -10.20 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.427 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds