Wall clock time and date at job start Tue Mar 31 2020 09:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.64700 * 2 1 4 4 C 1.54593 * 110.72822 * 123.15477 * 2 1 3 5 5 C 1.53995 * 105.14186 * 140.30886 * 4 2 1 6 6 N 1.47907 * 107.05710 * 1.23003 * 5 4 2 7 7 C 1.46895 * 110.99752 * 214.15448 * 6 5 4 8 8 C 1.53000 * 109.47012 * 294.45959 * 7 6 5 9 9 H 1.09008 * 109.46937 * 55.25181 * 8 7 6 10 10 O 1.42891 * 109.47624 * 295.25067 * 8 7 6 11 11 C 1.53006 * 109.46996 * 175.24596 * 8 7 6 12 12 O 1.42901 * 109.46837 * 185.00238 * 11 8 7 13 13 C 1.35676 * 116.99929 * 180.02562 * 12 11 8 14 14 C 1.39315 * 119.81415 * 359.72551 * 13 12 11 15 15 C 1.36447 * 120.17985 * 179.75823 * 14 13 12 16 16 C 1.40825 * 119.81086 * 0.51760 * 15 14 13 17 17 C 1.41218 * 120.17724 * 179.71744 * 16 15 14 18 18 H 1.08002 * 120.00381 * 208.50353 * 17 16 15 19 19 C 1.39897 * 120.00017 * 28.50460 * 17 16 15 20 20 N 1.30879 * 119.99913 * 12.66800 * 19 17 16 21 21 Si 1.86796 * 120.00236 * 192.66773 * 19 17 16 22 22 H 1.48504 * 109.46873 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47222 * 119.99776 * 21 19 17 24 24 H 1.48496 * 109.47314 * 240.00104 * 21 19 17 25 25 C 1.40827 * 119.64501 * 359.73670 * 16 15 14 26 26 C 1.36435 * 119.81078 * 0.02562 * 25 16 15 27 27 C 1.48535 * 105.81943 * 334.66812 * 6 5 4 28 28 H 1.09009 * 109.46416 * 298.30347 * 1 2 3 29 29 H 1.09002 * 109.47174 * 58.29156 * 1 2 3 30 30 H 1.08996 * 109.47286 * 178.30120 * 1 2 3 31 31 H 1.08999 * 110.30255 * 21.39800 * 4 2 1 32 32 H 1.08995 * 110.30738 * 259.23189 * 4 2 1 33 33 H 1.08995 * 109.91932 * 241.87624 * 5 4 2 34 34 H 1.08996 * 110.07798 * 120.66912 * 5 4 2 35 35 H 1.09000 * 109.47264 * 174.46757 * 7 6 5 36 36 H 1.09001 * 109.47558 * 54.46196 * 7 6 5 37 37 H 0.96701 * 114.00089 * 299.99842 * 10 8 7 38 38 H 1.08997 * 109.47419 * 305.00458 * 11 8 7 39 39 H 1.08994 * 109.46724 * 65.00904 * 11 8 7 40 40 H 1.07995 * 119.90911 * 0.02562 * 14 13 12 41 41 H 1.07999 * 120.08789 * 180.25046 * 15 14 13 42 42 H 0.97002 * 120.00444 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.09626 * 179.97438 * 25 16 15 44 44 H 1.08006 * 119.90774 * 179.97438 * 26 25 16 45 45 H 1.08996 * 110.66738 * 157.64789 * 27 6 5 46 46 H 1.09002 * 110.66528 * 280.77325 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0771 -0.7907 1.2105 5 6 3.2893 -1.5699 0.6673 6 7 3.4317 -1.2105 -0.7604 7 6 3.9210 -2.3524 -1.5443 8 6 5.3432 -2.7026 -1.1022 9 1 5.3560 -2.8807 -0.0269 10 8 6.2201 -1.6188 -1.4159 11 6 5.8088 -3.9634 -1.8335 12 8 7.0893 -4.3570 -1.3362 13 6 7.6487 -5.4652 -1.8838 14 6 6.9699 -6.1636 -2.8799 15 6 7.5276 -7.2762 -3.4392 16 6 8.7881 -7.7241 -2.9991 17 6 9.3699 -8.8781 -3.5684 18 1 10.0484 -9.4841 -2.9863 19 6 9.0673 -9.2365 -4.8864 20 7 8.4530 -8.3877 -5.6707 21 14 9.5401 -10.9263 -5.5270 22 1 10.2191 -11.6915 -4.4505 23 1 8.3180 -11.6532 -5.9549 24 1 10.4585 -10.7778 -6.6843 25 6 9.4652 -7.0154 -1.9879 26 6 8.8957 -5.9019 -1.4425 27 6 2.0782 -0.7965 -1.2107 28 1 -0.3632 0.4873 0.9049 29 1 -0.3633 0.5401 -0.8743 30 1 -0.3633 -1.0272 -0.0305 31 1 1.3208 -1.4807 1.5847 32 1 2.3897 -0.1065 1.9993 33 1 3.1160 -2.6415 0.7649 34 1 4.1901 -1.2883 1.2127 35 1 3.9234 -2.0921 -2.6028 36 1 3.2686 -3.2105 -1.3826 37 1 6.2589 -1.4043 -2.3580 38 1 5.0913 -4.7665 -1.6657 39 1 5.8812 -3.7580 -2.9015 40 1 6.0015 -5.8210 -3.2134 41 1 7.0019 -7.8142 -4.2142 42 1 8.2435 -8.6359 -6.5847 43 1 10.4320 -7.3527 -1.6446 44 1 9.4134 -5.3574 -0.6666 45 1 2.1443 -0.1592 -2.0924 46 1 1.4559 -1.6687 -1.4109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608784374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:50 Heat of formation + Delta-G solvation = -73.863743 kcal Electronic energy + Delta-G solvation = -24334.376645 eV Core-core repulsion = 20802.480094 eV Total energy + Delta-G solvation = -3531.896552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.68626 -38.81992 -37.21700 -35.97025 -33.59274 -33.29970 -30.57079 -29.79593 -29.60923 -28.89637 -26.66764 -24.98693 -24.27340 -22.44378 -21.17028 -20.92725 -20.37005 -20.09884 -17.35308 -17.04898 -16.68386 -16.44493 -16.03945 -15.40365 -15.19869 -14.78929 -14.26553 -14.08446 -13.92614 -13.67637 -13.44240 -13.42231 -12.82313 -12.77146 -12.46963 -12.38885 -12.04626 -11.99644 -11.70868 -11.53472 -11.44136 -11.24401 -11.15159 -11.04683 -10.98056 -10.84432 -10.70571 -10.59846 -9.91505 -9.88443 -9.73437 -9.35231 -9.06388 -8.61971 -7.66564 -6.96399 -6.68835 -4.26807 2.75944 2.95483 3.08969 3.14437 3.19520 3.48167 3.96636 4.04446 4.30828 4.37696 4.50119 4.63793 4.66010 4.90563 4.93967 5.00400 5.12701 5.17238 5.20789 5.27180 5.33666 5.41344 5.43559 5.46545 5.57433 5.63589 5.66540 5.71731 5.80286 5.84369 5.98250 6.06729 6.09281 6.27924 6.63562 6.68715 6.77522 6.88205 7.07575 7.28663 7.40101 7.56158 7.79489 7.89145 8.00777 8.15374 8.44636 8.65351 8.91505 8.98880 10.26772 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030790 B = 0.002278 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.159111 B =12289.155002 C =12761.098033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.083 0.917 4 C -0.127 4.127 5 C 0.032 3.968 6 N -0.505 5.505 7 C 0.018 3.982 8 C 0.118 3.882 9 H 0.103 0.897 10 O -0.540 6.540 11 C 0.038 3.962 12 O -0.318 6.318 13 C -0.004 4.004 14 C -0.178 4.178 15 C -0.127 4.127 16 C 0.085 3.915 17 C -0.464 4.464 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.808 5.808 21 Si 0.909 3.091 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.276 1.276 25 C -0.190 4.190 26 C -0.116 4.116 27 C 0.037 3.963 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.371 0.629 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.277 0.723 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 12.742 6.785 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.096 4.096 6 N -0.229 5.229 7 C -0.111 4.111 8 C 0.058 3.942 9 H 0.121 0.879 10 O -0.344 6.344 11 C -0.039 4.039 12 O -0.234 6.234 13 C -0.047 4.047 14 C -0.197 4.197 15 C -0.147 4.147 16 C 0.083 3.917 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.435 5.435 21 Si 0.734 3.266 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.210 4.210 26 C -0.135 4.135 27 C -0.091 4.091 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.217 0.783 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.177 13.273 7.263 20.734 hybrid contribution -0.683 -1.644 -1.249 2.175 sum -14.861 11.628 6.015 19.805 Atomic orbital electron populations 1.21783 0.94580 1.01844 1.01901 1.22057 0.95267 0.99879 0.94325 0.89841 1.22490 0.97041 0.98986 0.98015 1.22926 0.98894 0.98131 0.89643 1.64703 1.22851 1.33123 1.02219 1.22912 0.96513 0.92633 0.99073 1.21831 0.86996 0.84802 1.00605 0.87944 1.86622 1.66044 1.51952 1.29794 1.23137 0.86260 0.96508 0.98037 1.85869 1.32193 1.43569 1.61720 1.18632 0.95849 0.90310 0.99938 1.20614 0.99570 0.99578 0.99937 1.20953 0.95636 0.96893 1.01187 1.17614 0.90827 0.92362 0.90890 1.19486 1.24700 1.08189 0.97056 0.90532 1.25860 0.93461 0.98161 0.96864 1.69818 1.32561 1.34236 1.06929 0.86250 0.78945 0.82235 0.79177 1.18524 1.19915 1.20097 1.20658 0.99670 0.97108 1.03578 1.19637 0.93657 0.98426 1.01744 1.23329 0.88967 0.98528 0.98254 0.92392 0.92446 0.92702 0.91451 0.90970 0.93710 0.89917 0.89959 0.93518 0.78257 0.92597 0.92739 0.88909 0.86101 0.91176 0.88121 0.88410 0.90046 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.15 37.16 0.34 -0.52 16 2 C -0.10 -0.72 3.66 -88.76 -0.32 -1.05 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.00 6.51 -25.38 -0.17 -1.16 16 5 C 0.03 0.31 5.52 -2.75 -0.02 0.30 16 6 N -0.51 -5.31 5.24 -230.45 -1.21 -6.52 16 7 C 0.02 0.19 4.38 -3.83 -0.02 0.17 16 8 C 0.12 1.57 3.23 -26.73 -0.09 1.48 16 9 H 0.10 1.44 7.19 -51.92 -0.37 1.07 16 10 O -0.54 -7.85 13.25 -40.09 -0.53 -8.38 16 11 C 0.04 0.60 4.37 37.16 0.16 0.76 16 12 O -0.32 -6.62 10.09 -23.59 -0.24 -6.86 16 13 C 0.00 -0.10 6.71 -38.78 -0.26 -0.36 16 14 C -0.18 -4.19 8.96 -39.83 -0.36 -4.55 16 15 C -0.13 -3.32 8.61 -39.25 -0.34 -3.65 16 16 C 0.09 2.29 5.55 -106.81 -0.59 1.70 16 17 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 18 H 0.08 1.97 7.88 -52.49 -0.41 1.55 16 19 C 0.07 1.82 5.21 -17.34 -0.09 1.73 16 20 N -0.81 -21.11 10.92 55.55 0.61 -20.50 16 21 Si 0.91 18.89 29.58 -169.99 -5.03 13.86 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.19 -4.75 9.74 -39.25 -0.38 -5.13 16 26 C -0.12 -2.75 9.92 -39.83 -0.40 -3.14 16 27 C 0.04 0.32 6.00 -1.90 -0.01 0.31 16 28 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.43 7.64 -51.93 -0.40 0.04 16 34 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.47 7.94 -51.93 -0.41 0.06 16 37 H 0.37 4.21 9.05 45.56 0.41 4.62 16 38 H 0.06 0.85 7.64 -51.93 -0.40 0.45 16 39 H 0.05 0.84 7.66 -51.93 -0.40 0.44 16 40 H 0.09 1.93 6.27 -52.49 -0.33 1.60 16 41 H 0.12 3.23 6.26 -52.49 -0.33 2.91 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 44 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.37 7.91 -51.93 -0.41 -0.04 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -29.83 369.73 -10.52 -40.34 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.81 Total: 8.34 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.88 Total: -25.85 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: -0.60 Total: -27.02 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.77 Total: -15.24 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.83 -10.52 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608784374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.520 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds