Wall clock time and date at job start Tue Mar 31 2020 09:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99883 * 2 1 4 4 C 1.52999 * 109.46864 * 125.00183 * 3 2 1 5 5 H 1.08997 * 109.47521 * 55.00179 * 4 3 2 6 6 C 1.52999 * 109.47211 * 294.99718 * 4 3 2 7 7 O 1.42898 * 109.46662 * 65.00228 * 6 4 3 8 8 C 1.53004 * 109.46961 * 175.00219 * 4 3 2 9 9 N 1.46904 * 109.47204 * 185.00087 * 8 4 3 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 4 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31557 * 119.99702 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47164 * 60.00242 * 22 20 18 24 24 H 1.48500 * 109.46831 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46959 * 299.99841 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08005 * 120.00236 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00115 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99811 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47499 * 5.00026 * 3 2 1 32 32 H 1.09004 * 109.47058 * 244.99920 * 3 2 1 33 33 H 1.08994 * 109.47243 * 184.99954 * 6 4 3 34 34 H 1.09000 * 109.47365 * 305.00262 * 6 4 3 35 35 H 0.96701 * 113.99685 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.47560 * 64.99680 * 8 4 3 37 37 H 1.09004 * 109.46743 * 304.99524 * 8 4 3 38 38 H 1.00903 * 110.99438 * 303.95610 * 9 8 4 39 39 H 1.08998 * 109.47148 * 299.99944 * 12 10 9 40 40 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 41 41 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 42 42 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 43 43 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 44 44 H 0.97001 * 120.00315 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 46 46 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 3.6827 0.4573 1.1403 6 6 2.2450 1.3218 2.4918 7 8 1.5393 0.0850 2.6118 8 6 3.8875 2.6016 1.1110 9 7 4.8999 2.5711 2.1750 10 6 5.7394 3.7759 2.1377 11 1 5.8851 4.0853 1.1026 12 6 5.0520 4.9007 2.9143 13 6 7.0763 3.4763 2.7653 14 6 7.1445 2.6934 3.9033 15 6 8.3686 2.4124 4.4776 16 6 9.5310 2.9262 3.9177 17 8 10.7353 2.6559 4.4827 18 6 11.8305 3.0881 3.8258 19 1 11.7238 3.6928 2.9373 20 6 13.0939 2.7563 4.2908 21 7 13.2240 2.0193 5.3727 22 14 14.6113 3.3545 3.3802 23 1 14.6181 4.8392 3.3516 24 1 15.8298 2.8667 4.0748 25 1 14.5921 2.8326 1.9901 26 6 9.4588 3.7167 2.7781 27 6 8.2321 3.9899 2.2055 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 2.9317 1.4311 3.3311 34 1 1.5337 2.1477 2.4944 35 1 1.0152 0.0082 3.4208 36 1 3.2496 3.4758 1.2414 37 1 4.3816 2.6538 0.1408 38 1 4.4694 2.4577 3.0806 39 1 4.0851 5.1174 2.4604 40 1 4.9063 4.5914 3.9493 41 1 5.6747 5.7949 2.8863 42 1 6.2397 2.2980 4.3411 43 1 8.4215 1.7973 5.3638 44 1 14.1078 1.7867 5.6979 45 1 10.3608 4.1180 2.3405 46 1 8.1752 4.6042 1.3191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776170069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:32 Heat of formation + Delta-G solvation = -41.431864 kcal Electronic energy + Delta-G solvation = -24257.198214 eV Core-core repulsion = 20726.708014 eV Total energy + Delta-G solvation = -3530.490200 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.27933 -38.56414 -37.26111 -35.73902 -34.95389 -32.66719 -32.08812 -30.18724 -29.49894 -27.87019 -26.24939 -25.38165 -24.88780 -22.56767 -21.81498 -20.44518 -20.02126 -19.89094 -17.88914 -17.64505 -16.90122 -16.04447 -15.66526 -15.46671 -14.82993 -14.70739 -14.46621 -14.10681 -13.85111 -13.72997 -13.51726 -13.43913 -12.97866 -12.86258 -12.73842 -12.56033 -12.31941 -12.02558 -11.85028 -11.65423 -11.46249 -11.37613 -11.13569 -11.01130 -10.89675 -10.64004 -10.59887 -10.39784 -10.37589 -10.23631 -9.28900 -9.20954 -8.78787 -8.37780 -8.10667 -7.10290 -6.41162 -3.99984 2.27974 2.28740 2.38171 3.14825 3.16338 3.18868 3.99675 4.00623 4.10710 4.59153 4.60388 4.72380 4.85913 5.06100 5.09114 5.12492 5.17812 5.23035 5.25875 5.36361 5.37311 5.41809 5.50399 5.54185 5.62353 5.68582 5.77164 5.77955 5.83142 5.88070 5.98673 6.11854 6.14971 6.27361 6.46906 6.57034 6.74904 6.75941 6.88977 7.03847 7.11663 7.33929 7.36942 7.43124 7.46896 7.50048 7.88545 8.03969 9.04508 9.75906 10.77001 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.002328 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.852558 B =12022.585653 C =12177.504672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.087 4.087 4 C -0.083 4.083 5 H 0.091 0.909 6 C 0.081 3.919 7 O -0.562 6.562 8 C 0.065 3.935 9 N -0.680 5.680 10 C 0.141 3.859 11 H 0.076 0.924 12 C -0.176 4.176 13 C -0.167 4.167 14 C -0.053 4.053 15 C -0.194 4.194 16 C 0.153 3.847 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.233 4.233 27 C -0.068 4.068 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.373 0.627 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.337 0.663 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.379 1.687 -7.825 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.134 4.134 3 C -0.124 4.124 4 C -0.102 4.102 5 H 0.109 0.891 6 C 0.003 3.997 7 O -0.366 6.366 8 C -0.064 4.064 9 N -0.311 5.311 10 C 0.032 3.968 11 H 0.094 0.906 12 C -0.235 4.235 13 C -0.168 4.168 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.100 3.900 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.252 4.252 27 C -0.087 4.087 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.219 0.781 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.156 0.844 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.375 0.986 -8.416 22.993 hybrid contribution -0.070 1.132 0.484 1.234 sum -21.445 2.119 -7.932 22.963 Atomic orbital electron populations 1.23557 0.95884 1.00894 1.03887 1.22651 0.95758 0.97873 0.97094 1.20754 0.97779 0.95870 0.98028 1.21190 0.95914 0.99714 0.93379 0.89104 1.22203 0.94035 0.85979 0.97488 1.86576 1.66398 1.37846 1.45800 1.21978 0.92582 0.95272 0.96592 1.60649 1.23580 1.39770 1.07096 1.20190 0.90791 0.87336 0.98527 0.90594 1.22498 0.99946 1.00294 1.00758 1.19057 0.92981 1.05719 0.99057 1.20287 0.95740 0.96440 0.94698 1.20204 0.90588 1.06886 1.03673 1.19386 0.87257 0.92306 0.91099 1.83975 1.10523 1.68852 1.44994 1.21259 0.82228 1.32770 1.10480 0.89205 1.25276 0.98221 0.96474 0.96602 1.70030 1.24296 1.34460 1.21154 0.85794 0.79599 0.79022 0.79078 1.19565 1.20320 1.19532 1.21103 0.97989 1.06089 1.00056 1.20537 0.91816 0.98206 0.98123 0.89489 0.89147 0.87743 0.91934 0.90901 0.93572 0.94378 0.78116 0.95375 0.90362 0.84364 0.93459 0.92434 0.91777 0.87526 0.86744 0.92039 0.85702 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.73 14.08 29.01 0.41 -1.32 16 2 C -0.12 -1.05 7.31 -36.03 -0.26 -1.31 16 3 C -0.09 -0.72 5.13 -27.88 -0.14 -0.86 16 4 C -0.08 -0.75 2.43 -90.62 -0.22 -0.97 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 6 C 0.08 0.67 6.29 37.16 0.23 0.90 16 7 O -0.56 -4.85 11.22 -35.23 -0.40 -5.25 16 8 C 0.07 0.61 4.94 -3.82 -0.02 0.59 16 9 N -0.68 -7.82 5.71 -107.95 -0.62 -8.44 16 10 C 0.14 1.79 2.79 -68.87 -0.19 1.60 16 11 H 0.08 0.94 7.66 -51.92 -0.40 0.55 16 12 C -0.18 -1.93 9.14 37.16 0.34 -1.59 16 13 C -0.17 -2.79 4.96 -104.57 -0.52 -3.31 16 14 C -0.05 -0.94 9.31 -39.61 -0.37 -1.31 16 15 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 16 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 17 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 18 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 19 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 22 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.23 -5.10 9.17 -39.39 -0.36 -5.47 16 27 C -0.07 -1.24 9.66 -39.61 -0.38 -1.63 16 28 H 0.09 0.68 7.84 -52.48 -0.41 0.27 16 29 H 0.09 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.38 6.47 -51.93 -0.34 0.05 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.37 1.83 9.12 45.56 0.42 2.25 16 36 H 0.03 0.24 7.44 -51.93 -0.39 -0.15 16 37 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.34 3.58 5.98 -39.29 -0.23 3.35 16 39 H 0.05 0.44 7.45 -51.93 -0.39 0.05 16 40 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.61 7.25 -52.48 -0.38 1.23 16 43 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 46 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -31.55 375.15 -8.01 -39.57 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.45 Total: 8.37 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -1.94 Total: -25.54 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.14 Total: -33.29 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.39 Total: -10.45 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.55 -8.01 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776170069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.865 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds